Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12300

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,627,523	+		DZA65_RS12295	0.32	-0.8
2,627,523	+		DZA65_RS12295	0.32	+0.6
2,627,523	+		DZA65_RS12295	0.32	+0.2
2,627,524	-		DZA65_RS12295	0.32	-0.2
2,627,524	-		DZA65_RS12295	0.32	+0.1
2,627,524	-		DZA65_RS12295	0.32	-1.5
2,627,524	-		DZA65_RS12295	0.32	+0.3
2,627,524	-		DZA65_RS12295	0.32	-0.0
2,627,524	-		DZA65_RS12295	0.32	-1.9
2,627,524	-		DZA65_RS12295	0.32	-0.5
2,627,524	-		DZA65_RS12295	0.32	-1.5
2,627,524	-		DZA65_RS12295	0.32	+1.0
2,627,524	-		DZA65_RS12295	0.32	-2.6
2,627,561	+		DZA65_RS12295	0.36	-0.5
2,627,562	-		DZA65_RS12295	0.36	+0.6
2,627,757	+		DZA65_RS12295	0.53	+1.2
2,627,757	+		DZA65_RS12295	0.53	-0.5
2,627,757	+		DZA65_RS12295	0.53	+0.4
2,627,758	-		DZA65_RS12295	0.53	-0.0
2,627,758	-		DZA65_RS12295	0.53	-0.6
2,627,797	+		DZA65_RS12295	0.57	-1.5
2,627,884	+		DZA65_RS12295	0.65	-3.1
2,627,939	+		DZA65_RS12295	0.70	-0.6
2,627,939	+		DZA65_RS12295	0.70	-0.4
2,627,939	+		DZA65_RS12295	0.70	-0.0
2,627,939	+		DZA65_RS12295	0.70	-2.0
2,627,939	+		DZA65_RS12295	0.70	-1.1
2,627,939	+		DZA65_RS12295	0.70	-1.0
2,627,939	+		DZA65_RS12295	0.70	+0.2
2,627,939	+		DZA65_RS12295	0.70	-2.4
2,627,939	+		DZA65_RS12295	0.70	-1.2
2,627,940	-		DZA65_RS12295	0.70	-1.5
2,627,940	-		DZA65_RS12295	0.70	+0.1
2,627,940	-		DZA65_RS12295	0.70	+2.8
2,627,940	-		DZA65_RS12295	0.70	+0.2
2,627,940	-		DZA65_RS12295	0.70	-1.2
2,627,940	-		DZA65_RS12295	0.70	+0.8
2,627,940	-		DZA65_RS12295	0.70	-3.2
2,627,942	+		DZA65_RS12295	0.70	+2.4
2,627,942	+		DZA65_RS12295	0.70	-0.2
2,627,942	+		DZA65_RS12295	0.70	-0.2
2,627,943	-		DZA65_RS12295	0.70	-2.0
2,628,012	+		DZA65_RS12295	0.76	-0.8
2,628,012	+		DZA65_RS12295	0.76	-3.3
2,628,013	-		DZA65_RS12295	0.77	+0.1
2,628,013	-		DZA65_RS12295	0.77	+0.0
2,628,013	-		DZA65_RS12295	0.77	-0.3
2,628,013	-		DZA65_RS12295	0.77	-0.8
2,628,013	-		DZA65_RS12295	0.77	+2.7
2,628,024	+		DZA65_RS12295	0.78	-0.8
2,628,025	-		DZA65_RS12295	0.78	-1.0
2,628,025	-		DZA65_RS12295	0.78	+0.4
2,628,112	+		DZA65_RS12295	0.85	-1.8
2,628,375	-				-3.3
2,628,381	+				+0.6
2,628,381	+				-0.2
2,628,381	+				-2.2
2,628,381	+				-0.7
2,628,381	+				+0.3
2,628,381	+				+0.0
2,628,381	+				-1.5
2,628,382	-				-1.0
2,628,382	-				-0.5
2,628,382	-				-1.5
2,628,382	-				-1.3
2,628,382	-				+0.7
2,628,385	+				+0.2
2,628,386	-				-2.5
2,628,404	+				-1.8
2,628,404	+				-0.0
2,628,405	-				-0.6
2,628,419	-				-1.1
2,628,436	+				-0.5
2,628,438	+				-0.5
2,628,438	+				-0.0
2,628,438	+				-1.3
2,628,439	-				+0.5
2,628,439	-				-0.4
2,628,444	+				-2.3
2,628,445	-				+3.0
2,628,445	-				-0.8
2,628,445	-				-1.8
2,628,453	+				-0.8
2,628,455	+				-2.0
2,628,455	+				+0.6
2,628,455	+				+0.6
2,628,455	+				+2.5
2,628,455	+				-2.5
2,628,455	+				-1.5
2,628,455	+				-2.6
2,628,455	+				+0.5
2,628,455	+				+1.1
2,628,456	-				+0.6
2,628,456	-				+2.4
2,628,456	-				-1.0
2,628,467	-				+0.6
2,628,480	-				+1.1
2,628,705	-		DZA65_RS12300	0.28	+0.2
2,628,743	+		DZA65_RS12300	0.34	-0.1
2,628,744	-		DZA65_RS12300	0.34	-2.3
2,628,744	-		DZA65_RS12300	0.34	-0.4
2,628,744	-		DZA65_RS12300	0.34	+1.2
2,628,744	-		DZA65_RS12300	0.34	-0.4
2,628,747	-		DZA65_RS12300	0.35	-2.2
2,628,747	-		DZA65_RS12300	0.35	-1.5
2,628,830	+		DZA65_RS12300	0.47	-0.7
2,628,831	-		DZA65_RS12300	0.47	-1.6
2,628,902	-		DZA65_RS12300	0.58	-0.2
2,628,994	+		DZA65_RS12300	0.71	+0.0
2,628,994	+		DZA65_RS12300	0.71	+0.1
2,628,994	+		DZA65_RS12300	0.71	+0.4
2,628,995	-		DZA65_RS12300	0.71	+0.4
2,629,040	+		DZA65_RS12300	0.78	+1.6
2,629,041	-		DZA65_RS12300	0.78	-1.2
2,629,088	+		DZA65_RS12300	0.85	+0.5
2,629,088	+		DZA65_RS12300	0.85	-1.2
2,629,089	-		DZA65_RS12300	0.85	-1.2
2,629,149	-				-1.8
2,629,149	-				-2.3
2,629,149	-				-2.6
2,629,169	+				+0.2
2,629,169	+				-0.2
2,629,170	-				+1.2
2,629,179	+				-1.5
2,629,180	-				+0.7
2,629,180	-				-1.5
2,629,180	-				-0.8
2,629,180	-				+0.8
2,629,201	+				-2.0
2,629,201	+				-3.2
2,629,201	+				+0.2
2,629,202	-				-0.2
2,629,202	-				-1.5
2,629,221	+				-2.0
2,629,365	-		DZA65_RS12305	0.25	-0.3
2,629,365	-		DZA65_RS12305	0.25	+0.1
2,629,368	-		DZA65_RS12305	0.26	-0.4
2,629,404	-		DZA65_RS12305	0.31	-1.2
2,629,423	+		DZA65_RS12305	0.34	+1.6
2,629,423	+		DZA65_RS12305	0.34	+0.8
2,629,452	-		DZA65_RS12305	0.38	-0.2
2,629,495	+		DZA65_RS12305	0.44	+1.0
2,629,495	+		DZA65_RS12305	0.44	-1.8
2,629,495	+		DZA65_RS12305	0.44	-2.2
2,629,508	-		DZA65_RS12305	0.46	+0.5
2,629,508	-		DZA65_RS12305	0.46	-0.6
2,629,508	-		DZA65_RS12305	0.46	-2.0
2,629,508	-		DZA65_RS12305	0.46	-1.0
2,629,581	+		DZA65_RS12305	0.57	+3.9
2,629,581	+		DZA65_RS12305	0.57	-0.5
2,629,581	+		DZA65_RS12305	0.57	-1.2
2,629,582	-		DZA65_RS12305	0.57	+1.0
2,629,588	+		DZA65_RS12305	0.58	+0.5
2,629,589	-		DZA65_RS12305	0.58	-0.6
2,629,635	+		DZA65_RS12305	0.65	-1.1
2,629,635	+		DZA65_RS12305	0.65	-0.1
2,629,635	+		DZA65_RS12305	0.65	+3.3
2,629,635	+		DZA65_RS12305	0.65	+0.5
2,629,635	+		DZA65_RS12305	0.65	+0.8
2,629,635	+		DZA65_RS12305	0.65	-0.2
2,629,635	+		DZA65_RS12305	0.65	+1.2
2,629,635	+		DZA65_RS12305	0.65	+1.1
2,629,635	+		DZA65_RS12305	0.65	+1.5
2,629,635	+		DZA65_RS12305	0.65	-0.2
2,629,635	+		DZA65_RS12305	0.65	+2.0
2,629,635	+		DZA65_RS12305	0.65	-0.9
2,629,635	+		DZA65_RS12305	0.65	-0.2
2,629,636	-		DZA65_RS12305	0.65	+1.8
2,629,636	-		DZA65_RS12305	0.65	+1.5
2,629,636	-		DZA65_RS12305	0.65	-3.3
2,629,636	-		DZA65_RS12305	0.65	+1.4
2,629,636	-		DZA65_RS12305	0.65	-0.4
2,629,636	-		DZA65_RS12305	0.65	+1.5
2,629,636	-		DZA65_RS12305	0.65	-1.8
2,629,636	-		DZA65_RS12305	0.65	-1.0
2,629,636	-		DZA65_RS12305	0.65	-1.6
2,629,636	-		DZA65_RS12305	0.65	+1.8
2,629,636	-		DZA65_RS12305	0.65	-1.2
2,629,636	-		DZA65_RS12305	0.65	+0.1
2,629,636	-		DZA65_RS12305	0.65	-0.8
2,629,636	-		DZA65_RS12305	0.65	-0.2
2,629,636	-		DZA65_RS12305	0.65	-0.5
2,629,720	+		DZA65_RS12305	0.78	-0.2
2,629,720	+		DZA65_RS12305	0.78	-0.8
2,629,720	+		DZA65_RS12305	0.78	-3.3
2,629,721	-		DZA65_RS12305	0.78	-1.2
2,629,721	-		DZA65_RS12305	0.78	-1.2
2,629,721	-		DZA65_RS12305	0.78	-3.3
2,629,721	-		DZA65_RS12305	0.78	+1.1
2,629,721	-		DZA65_RS12305	0.78	-1.2
2,629,721	-		DZA65_RS12305	0.78	-0.8
2,629,746	+		DZA65_RS12305	0.82	-1.5
2,629,746	+		DZA65_RS12305	0.82	-1.2
2,629,789	+		DZA65_RS12305	0.88	-1.4
2,629,789	+		DZA65_RS12305	0.88	+0.8
2,629,790	-		DZA65_RS12305	0.88	+1.0
2,629,790	-		DZA65_RS12305	0.88	+0.5
2,629,790	-		DZA65_RS12305	0.88	-1.3
2,629,790	-		DZA65_RS12305	0.88	-1.3
2,629,790	-		DZA65_RS12305	0.88	-0.2
2,629,790	-		DZA65_RS12305	0.88	-1.2
2,629,816	+				+0.8
2,629,816	+				-2.0
2,629,816	+				-1.4
2,629,817	-				+1.8
2,629,817	-				-2.3
2,629,895	-				-2.2
2,629,909	+				-2.1
2,629,909	+				-1.2
2,629,909	+				-1.2
2,629,909	+				+2.4
2,629,909	+				-0.0
2,629,909	+				+3.1
2,629,909	+				-0.8
2,629,909	+				+0.8
2,629,909	+				-1.0
2,629,909	+				-1.0
2,629,909	+				+0.4
2,629,909	+				-0.2
2,629,909	+				+0.8
2,629,909	+				+1.5
2,629,909	+				-0.2
2,629,909	+				-1.5
2,629,909	+				+0.8
2,629,909	+				+2.0
2,629,909	+				+0.3
2,629,910	-				-0.2
2,629,910	-				+1.6
2,629,910	-				+1.3
2,629,910	-				-0.2
2,629,910	-				-1.5
2,629,910	-				-0.8
2,629,910	-				-0.9
2,629,910	-				+0.7
2,629,910	-				-2.2
2,629,913	+				-1.9
2,629,913	+				+0.8
2,629,913	+				-1.0
2,629,914	-				+1.0
2,629,914	-				+1.8
2,629,914	-				-0.9
2,629,914	-				+0.1
2,629,914	-				+2.0
2,629,914	-				+0.2
2,629,914	-				-1.0
2,629,932	-				+1.6
2,629,939	+				-1.0
2,629,940	-				-1.8
2,629,984	+				-1.0
2,629,985	-				-1.2
2,629,985	-				+1.1
2,629,985	-				-2.6
2,629,985	-				+0.8
2,630,005	+		DZA65_RS12310	0.12	-2.0
2,630,005	+		DZA65_RS12310	0.12	+0.4
2,630,005	+		DZA65_RS12310	0.12	-1.5
2,630,005	+		DZA65_RS12310	0.12	+0.2
2,630,005	+		DZA65_RS12310	0.12	-1.8
2,630,005	+		DZA65_RS12310	0.12	-0.4
2,630,006	-		DZA65_RS12310	0.12	-1.2
2,630,006	-		DZA65_RS12310	0.12	+2.1
2,630,030	+		DZA65_RS12310	0.15	-1.0
2,630,062	+		DZA65_RS12310	0.19	-0.6
2,630,062	+		DZA65_RS12310	0.19	-2.6
2,630,062	+		DZA65_RS12310	0.19	+0.3