Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11235

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,381,128	+		DZA65_RS11230	0.46	-3.1
2,381,150	+		DZA65_RS11230	0.48	-0.6
2,381,218	+		DZA65_RS11230	0.52	-1.4
2,381,219	-				-0.8
2,381,226	-		DZA65_RS11230	0.53	+0.8
2,381,226	-		DZA65_RS11230	0.53	-0.2
2,381,226	-		DZA65_RS11230	0.53	-0.8
2,381,226	-		DZA65_RS11230	0.53	+1.8
2,381,226	-		DZA65_RS11230	0.53	-2.2
2,381,226	-		DZA65_RS11230	0.53	+1.0
2,381,226	-		DZA65_RS11230	0.53	-1.5
2,381,280	-		DZA65_RS11230	0.57	-0.3
2,381,299	+		DZA65_RS11230	0.58	+2.0
2,381,300	-		DZA65_RS11230	0.58	+0.5
2,381,351	+		DZA65_RS11230	0.62	-0.6
2,381,363	-		DZA65_RS11230	0.63	+0.8
2,381,401	+		DZA65_RS11230	0.65	-2.0
2,381,401	+		DZA65_RS11230	0.65	-1.5
2,381,401	+		DZA65_RS11230	0.65	-0.2
2,381,401	+		DZA65_RS11230	0.65	-2.6
2,381,402	-		DZA65_RS11230	0.65	-1.8
2,381,402	-		DZA65_RS11230	0.65	+0.8
2,381,402	-		DZA65_RS11230	0.65	+2.8
2,381,402	-		DZA65_RS11230	0.65	-1.5
2,381,402	-		DZA65_RS11230	0.65	+0.2
2,381,452	+		DZA65_RS11230	0.69	+2.0
2,381,452	+		DZA65_RS11230	0.69	+0.8
2,381,453	-		DZA65_RS11230	0.69	-0.9
2,381,475	-		DZA65_RS11230	0.70	+0.2
2,381,497	+		DZA65_RS11230	0.72	-0.8
2,381,497	+		DZA65_RS11230	0.72	-0.5
2,381,497	+		DZA65_RS11230	0.72	-2.2
2,381,497	+		DZA65_RS11230	0.72	+0.2
2,381,497	+		DZA65_RS11230	0.72	+0.4
2,381,498	-		DZA65_RS11230	0.72	+0.7
2,381,498	-		DZA65_RS11230	0.72	+0.6
2,381,498	-		DZA65_RS11230	0.72	+1.1
2,381,498	-		DZA65_RS11230	0.72	+1.1
2,381,498	-		DZA65_RS11230	0.72	-2.0
2,381,652	-		DZA65_RS11230	0.83	-2.2
2,381,671	+		DZA65_RS11230	0.84	+1.1
2,381,672	-		DZA65_RS11230	0.84	-0.8
2,381,672	-		DZA65_RS11230	0.84	+0.2
2,381,696	-		DZA65_RS11230	0.86	-0.9
2,381,697	+		DZA65_RS11230	0.86	-0.9
2,381,697	+		DZA65_RS11230	0.86	-2.2
2,381,697	+		DZA65_RS11230	0.86	-0.5
2,381,697	+		DZA65_RS11230	0.86	-1.2
2,381,697	+		DZA65_RS11230	0.86	-0.2
2,381,697	+		DZA65_RS11230	0.86	-0.2
2,381,698	-		DZA65_RS11230	0.86	+0.0
2,381,698	-		DZA65_RS11230	0.86	-0.4
2,381,698	-		DZA65_RS11230	0.86	-1.5
2,381,698	-		DZA65_RS11230	0.86	+2.9
2,381,698	-		DZA65_RS11230	0.86	-2.2
2,381,698	-		DZA65_RS11230	0.86	-2.0
2,381,698	-		DZA65_RS11230	0.86	-2.0
2,381,698	-		DZA65_RS11230	0.86	-1.1
2,381,721	-		DZA65_RS11230	0.87	+0.2
2,381,764	+				+1.5
2,381,764	+				-1.4
2,381,765	-				+0.4
2,381,765	-				+0.2
2,381,765	-				+0.3
2,381,765	-				+2.4
2,381,781	+				+0.6
2,381,781	+				-0.6
2,381,782	-				-2.0
2,381,788	-				-0.4
2,381,788	-				-2.2
2,381,809	+				-1.8
2,381,813	-				-1.0
2,381,824	+				+0.8
2,381,824	+				-0.8
2,381,825	-				-1.8
2,381,825	-				+1.9
2,381,836	+				-2.6
2,381,845	+				+1.8
2,381,845	+				-2.0
2,381,873	+				+1.1
2,381,873	+				+2.5
2,381,873	+				+0.0
2,381,874	-				+1.2
2,381,878	-				-0.7
2,381,878	-				-0.8
2,381,883	+				+2.1
2,381,884	-				-0.8
2,381,884	-				-2.0
2,381,884	-				+1.3
2,381,903	+				-2.2
2,381,903	+				+0.5
2,381,903	+				+1.6
2,381,904	-				+0.8
2,381,904	-				+0.4
2,381,904	-				+1.0
2,381,906	+				+3.2
2,381,906	+				-1.4
2,381,906	+				-1.9
2,381,906	+				-1.8
2,381,906	+				-0.8
2,381,906	+				+2.5
2,381,907	-				-0.1
2,381,907	-				-1.2
2,381,917	+				-1.0
2,381,918	-				-1.2
2,381,993	-				-2.0
2,382,072	+				-1.2
2,382,073	-				-0.0
2,382,073	-				+0.3
2,382,073	-				-1.8
2,382,101	-				+0.8
2,382,112	+				-0.2
2,382,112	+				-0.1
2,382,112	+				-1.4
2,382,157	+				-1.2
2,382,158	-				+1.8
2,382,219	+		DZA65_RS11235	0.11	-0.5
2,382,220	-		DZA65_RS11235	0.11	-0.2
2,382,252	+		DZA65_RS11235	0.13	+1.8
2,382,252	+		DZA65_RS11235	0.13	+0.4
2,382,252	+		DZA65_RS11235	0.13	-0.9
2,382,252	+		DZA65_RS11235	0.13	+0.4
2,382,252	+		DZA65_RS11235	0.13	-2.4
2,382,253	-		DZA65_RS11235	0.13	+0.7
2,382,253	-		DZA65_RS11235	0.13	+3.1
2,382,253	-		DZA65_RS11235	0.13	-0.8
2,382,289	+		DZA65_RS11235	0.16	-1.2
2,382,289	+		DZA65_RS11235	0.16	-2.0
2,382,290	-		DZA65_RS11235	0.16	+0.1
2,382,290	-		DZA65_RS11235	0.16	-0.4
2,382,513	+		DZA65_RS11235	0.31	-0.8
2,382,514	-		DZA65_RS11235	0.32	-1.9
2,382,514	-		DZA65_RS11235	0.32	+0.4
2,382,533	+		DZA65_RS11235	0.33	+1.8
2,382,533	+		DZA65_RS11235	0.33	-2.0
2,382,534	-		DZA65_RS11235	0.33	-0.9
2,382,556	-		DZA65_RS11235	0.35	-0.9
2,382,556	-		DZA65_RS11235	0.35	+3.0
2,382,556	-		DZA65_RS11235	0.35	+0.8
2,382,556	-		DZA65_RS11235	0.35	+1.0
2,382,556	-		DZA65_RS11235	0.35	-2.0
2,382,567	+		DZA65_RS11235	0.35	+1.4
2,382,567	+		DZA65_RS11235	0.35	+1.8
2,382,567	+		DZA65_RS11235	0.35	+0.8
2,382,567	+		DZA65_RS11235	0.35	-1.5
2,382,568	-		DZA65_RS11235	0.35	-0.1
2,382,568	-		DZA65_RS11235	0.35	-1.8
2,382,568	-		DZA65_RS11235	0.35	+0.8
2,382,568	-		DZA65_RS11235	0.35	-0.2
2,382,568	-		DZA65_RS11235	0.35	+0.2
2,382,568	-		DZA65_RS11235	0.35	-1.5
2,382,568	-		DZA65_RS11235	0.35	+0.7
2,382,568	-		DZA65_RS11235	0.35	+0.2
2,382,568	-		DZA65_RS11235	0.35	-0.2
2,382,568	-		DZA65_RS11235	0.35	+1.9
2,382,573	+		DZA65_RS11235	0.36	+0.2
2,382,573	+		DZA65_RS11235	0.36	-0.8
2,382,573	+		DZA65_RS11235	0.36	-0.8
2,382,573	+		DZA65_RS11235	0.36	+1.1
2,382,573	+		DZA65_RS11235	0.36	-0.0
2,382,573	+		DZA65_RS11235	0.36	-2.2
2,382,574	-		DZA65_RS11235	0.36	-1.4
2,382,574	-		DZA65_RS11235	0.36	+0.8
2,382,592	+		DZA65_RS11235	0.37	-1.8
2,382,643	+		DZA65_RS11235	0.41	+0.8
2,382,644	-		DZA65_RS11235	0.41	+0.8
2,382,666	+		DZA65_RS11235	0.42	-1.2
2,382,666	+		DZA65_RS11235	0.42	-2.6
2,382,666	+		DZA65_RS11235	0.42	-1.1
2,382,820	+		DZA65_RS11235	0.53	+0.8
2,382,820	+		DZA65_RS11235	0.53	-1.8
2,382,820	+		DZA65_RS11235	0.53	-0.8
2,382,821	-		DZA65_RS11235	0.53	+0.2
2,382,821	-		DZA65_RS11235	0.53	-1.2
2,382,821	-		DZA65_RS11235	0.53	+0.2
2,382,821	-		DZA65_RS11235	0.53	+0.8
2,382,821	-		DZA65_RS11235	0.53	+0.8
2,382,853	+		DZA65_RS11235	0.56	-1.8
2,382,853	+		DZA65_RS11235	0.56	-1.2
2,382,853	+		DZA65_RS11235	0.56	-1.4
2,382,854	-				-0.8
2,382,854	-		DZA65_RS11235	0.56	-2.0
2,382,854	-		DZA65_RS11235	0.56	+0.4
2,382,854	-		DZA65_RS11235	0.56	+2.7
2,382,854	-		DZA65_RS11235	0.56	-2.6
2,382,854	-		DZA65_RS11235	0.56	-0.8
2,382,945	-		DZA65_RS11235	0.62	+1.2
2,383,045	-		DZA65_RS11235	0.69	-0.9
2,383,111	+		DZA65_RS11235	0.74	-1.2
2,383,112	-		DZA65_RS11235	0.74	-0.6
2,383,122	+		DZA65_RS11235	0.75	-0.2
2,383,141	-		DZA65_RS11235	0.76	-1.5
2,383,141	-		DZA65_RS11235	0.76	+0.1
2,383,175	+		DZA65_RS11235	0.79	-0.8
2,383,176	-		DZA65_RS11235	0.79	+0.8
2,383,176	-		DZA65_RS11235	0.79	-0.8
2,383,176	-		DZA65_RS11235	0.79	-0.2
2,383,176	-		DZA65_RS11235	0.79	+0.8
2,383,179	+		DZA65_RS11235	0.79	-1.4
2,383,179	+		DZA65_RS11235	0.79	+2.6
2,383,179	+		DZA65_RS11235	0.79	-3.0
2,383,179	+		DZA65_RS11235	0.79	+0.7
2,383,179	+		DZA65_RS11235	0.79	-0.1
2,383,179	+		DZA65_RS11235	0.79	+0.5
2,383,179	+		DZA65_RS11235	0.79	-1.5
2,383,179	+		DZA65_RS11235	0.79	-0.8
2,383,179	+		DZA65_RS11235	0.79	-0.8
2,383,179	+		DZA65_RS11235	0.79	-1.0
2,383,179	+		DZA65_RS11235	0.79	+0.2
2,383,180	-		DZA65_RS11235	0.79	-1.2
2,383,180	-		DZA65_RS11235	0.79	-1.5
2,383,180	-		DZA65_RS11235	0.79	+0.8
2,383,180	-		DZA65_RS11235	0.79	-0.5
2,383,180	-		DZA65_RS11235	0.79	+0.6
2,383,180	-		DZA65_RS11235	0.79	+2.1
2,383,180	-		DZA65_RS11235	0.79	-0.8
2,383,180	-		DZA65_RS11235	0.79	-1.1
2,383,180	-		DZA65_RS11235	0.79	+1.4
2,383,180	-		DZA65_RS11235	0.79	-2.5
2,383,180	-		DZA65_RS11235	0.79	-1.5
2,383,184	-		DZA65_RS11235	0.79	-0.8
2,383,207	+		DZA65_RS11235	0.81	-0.2
2,383,248	+		DZA65_RS11235	0.84	-1.8
2,383,248	+		DZA65_RS11235	0.84	+1.3
2,383,248	+		DZA65_RS11235	0.84	-0.5
2,383,248	+		DZA65_RS11235	0.84	-0.3
2,383,249	-		DZA65_RS11235	0.84	+2.3
2,383,249	-		DZA65_RS11235	0.84	-1.5
2,383,249	-		DZA65_RS11235	0.84	-1.2
2,383,260	+		DZA65_RS11235	0.85	-0.8
2,383,260	+		DZA65_RS11235	0.85	-1.2
2,383,260	+		DZA65_RS11235	0.85	-0.8
2,383,260	+		DZA65_RS11235	0.85	+0.0
2,383,261	-		DZA65_RS11235	0.85	+0.4
2,383,266	+		DZA65_RS11235	0.85	-2.0
2,383,267	-		DZA65_RS11235	0.85	-0.2
2,383,267	-		DZA65_RS11235	0.85	+2.1
2,383,267	-		DZA65_RS11235	0.85	+1.3
2,383,267	-		DZA65_RS11235	0.85	-1.5
2,383,454	+				+0.4
2,383,454	+				+0.2
2,383,455	-				-0.6
2,383,455	-				+0.1
2,383,455	-				-1.8
2,383,455	-				+1.0
2,383,455	-				-1.8
2,383,458	-				+0.5
2,383,489	-				-0.2
2,383,532	-				+0.2
2,383,540	-				-1.3
2,383,540	-				-0.5
2,383,540	-				-1.6
2,383,540	-				-0.5
2,383,597	+				+0.6
2,383,656	+		DZA65_RS11240	0.13	+0.8
2,383,656	+		DZA65_RS11240	0.13	-2.2
2,383,656	+		DZA65_RS11240	0.13	-0.5
2,383,657	-		DZA65_RS11240	0.13	+0.1
2,383,659	+		DZA65_RS11240	0.13	+1.9
2,383,659	+		DZA65_RS11240	0.13	+2.1
2,383,744	+		DZA65_RS11240	0.20	-1.8
2,383,934	+		DZA65_RS11240	0.34	+0.8
2,383,934	+		DZA65_RS11240	0.34	+0.2
2,383,934	+		DZA65_RS11240	0.34	-1.8
2,383,934	+		DZA65_RS11240	0.34	+0.2
2,383,934	+		DZA65_RS11240	0.34	-0.6
2,383,935	-		DZA65_RS11240	0.34	-0.2
2,383,935	-		DZA65_RS11240	0.34	+1.2
2,383,935	-		DZA65_RS11240	0.34	+1.1
2,384,038	-		DZA65_RS11240	0.42	-0.5
2,384,063	+		DZA65_RS11240	0.44	-1.8
2,384,064	-		DZA65_RS11240	0.44	-1.5
2,384,080	+		DZA65_RS11240	0.46	-1.8
2,384,081	-		DZA65_RS11240	0.46	-2.0
2,384,181	+		DZA65_RS11240	0.53	+1.7
2,384,181	+		DZA65_RS11240	0.53	+0.1
2,384,181	+		DZA65_RS11240	0.53	-2.1
2,384,181	+		DZA65_RS11240	0.53	+1.8
2,384,181	+		DZA65_RS11240	0.53	-1.3
2,384,181	+		DZA65_RS11240	0.53	-0.6
2,384,181	+		DZA65_RS11240	0.53	+1.6
2,384,181	+		DZA65_RS11240	0.53	+0.7
2,384,181	+				-1.2
2,384,181	+		DZA65_RS11240	0.53	+0.2
2,384,182	-		DZA65_RS11240	0.54	-0.8
2,384,182	-		DZA65_RS11240	0.54	+0.2
2,384,182	-		DZA65_RS11240	0.54	+1.3
2,384,182	-		DZA65_RS11240	0.54	-1.5
2,384,182	-		DZA65_RS11240	0.54	+2.2
2,384,182	-		DZA65_RS11240	0.54	-0.1
2,384,182	-		DZA65_RS11240	0.54	-1.4
2,384,182	-		DZA65_RS11240	0.54	-1.2
2,384,182	-		DZA65_RS11240	0.54	+1.1
2,384,182	-		DZA65_RS11240	0.54	+0.1
2,384,182	-		DZA65_RS11240	0.54	+0.3
2,384,185	+		DZA65_RS11240	0.54	-2.5
2,384,185	+		DZA65_RS11240	0.54	-2.5
2,384,186	-		DZA65_RS11240	0.54	-1.2
2,384,354	+		DZA65_RS11240	0.67	-2.4
2,384,354	+		DZA65_RS11240	0.67	-2.0
2,384,354	+		DZA65_RS11240	0.67	+0.8
2,384,354	+		DZA65_RS11240	0.67	-0.2
2,384,354	+		DZA65_RS11240	0.67	-0.2
2,384,354	+		DZA65_RS11240	0.67	+1.4
2,384,354	+		DZA65_RS11240	0.67	+0.8
2,384,355	-		DZA65_RS11240	0.67	+0.5
2,384,355	-		DZA65_RS11240	0.67	-1.2
2,384,355	-		DZA65_RS11240	0.67	+1.2
2,384,355	-		DZA65_RS11240	0.67	+2.1