Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05385

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,106,351	+		DZA65_RS05375	0.45	-0.1
1,106,351	+		DZA65_RS05375	0.45	-0.5
1,106,351	+		DZA65_RS05375	0.45	-0.5
1,106,352	-		DZA65_RS05375	0.46	+2.1
1,106,352	-		DZA65_RS05375	0.46	-2.9
1,106,352	-		DZA65_RS05375	0.46	-1.2
1,106,352	-		DZA65_RS05375	0.46	+1.4
1,106,352	-		DZA65_RS05375	0.46	-0.9
1,106,352	-		DZA65_RS05375	0.46	+2.5
1,106,352	-		DZA65_RS05375	0.46	-0.9
1,106,352	-		DZA65_RS05375	0.46	-1.5
1,106,470	+		DZA65_RS05375	0.59	-1.7
1,106,558	-		DZA65_RS05375	0.70	+0.1
1,106,615	+		DZA65_RS05375	0.76	+1.1
1,106,616	-		DZA65_RS05375	0.77	-2.6
1,106,616	-		DZA65_RS05375	0.77	-1.9
1,107,226	+				-0.9
1,107,226	+				-1.5
1,107,226	+				-0.5
1,107,226	+				-1.2
1,107,226	+				-0.5
1,107,226	+				-2.5
1,107,262	+				+0.1
1,107,262	+				+0.9
1,107,320	+				-0.9
1,107,320	+				-0.2
1,107,321	-				-0.6
1,107,448	+		DZA65_RS05385	0.16	-0.9
1,107,448	+		DZA65_RS05385	0.16	+2.3
1,107,448	+		DZA65_RS05385	0.16	+1.8
1,107,448	+		DZA65_RS05385	0.16	+2.1
1,107,448	+		DZA65_RS05385	0.16	-1.0
1,107,448	+		DZA65_RS05385	0.16	+0.3
1,107,449	-		DZA65_RS05385	0.17	+2.0
1,107,449	-		DZA65_RS05385	0.17	-1.0
1,107,449	-		DZA65_RS05385	0.17	+0.5
1,107,449	-		DZA65_RS05385	0.17	+0.1
1,107,449	-		DZA65_RS05385	0.17	+0.9
1,107,449	-		DZA65_RS05385	0.17	+1.7
1,107,460	-		DZA65_RS05385	0.17	-0.9
1,107,675	+		DZA65_RS05385	0.35	-0.7
1,107,676	-		DZA65_RS05385	0.35	-1.7
1,107,676	-		DZA65_RS05385	0.35	-2.3
1,107,676	-		DZA65_RS05385	0.35	-0.5
1,107,758	+		DZA65_RS05385	0.42	+0.8
1,107,786	-		DZA65_RS05385	0.44	-1.0
1,107,809	+		DZA65_RS05385	0.46	+2.7
1,107,809	+		DZA65_RS05385	0.46	+0.9
1,107,810	-		DZA65_RS05385	0.46	+0.2
1,107,810	-		DZA65_RS05385	0.46	-1.5
1,107,810	-		DZA65_RS05385	0.46	-0.2
1,107,810	-		DZA65_RS05385	0.46	-1.3
1,107,810	-		DZA65_RS05385	0.46	+0.1
1,107,906	+		DZA65_RS05385	0.54	-0.9
1,107,906	+		DZA65_RS05385	0.54	+1.4
1,107,906	+		DZA65_RS05385	0.54	-0.3
1,107,906	+		DZA65_RS05385	0.54	-0.6
1,107,906	+		DZA65_RS05385	0.54	+1.7
1,107,907	-		DZA65_RS05385	0.54	-2.3
1,107,907	-		DZA65_RS05385	0.54	-2.0
1,108,020	+		DZA65_RS05385	0.64	+1.1
1,108,020	+		DZA65_RS05385	0.64	-0.9
1,108,020	+		DZA65_RS05385	0.64	-1.9
1,108,020	+		DZA65_RS05385	0.64	+0.1
1,108,020	+		DZA65_RS05385	0.64	-0.7
1,108,020	+		DZA65_RS05385	0.64	-1.2
1,108,020	+		DZA65_RS05385	0.64	+0.3
1,108,020	+		DZA65_RS05385	0.64	-1.2
1,108,021	-		DZA65_RS05385	0.64	-0.5
1,108,021	-		DZA65_RS05385	0.64	-1.2
1,108,021	-		DZA65_RS05385	0.64	+1.3
1,108,021	-		DZA65_RS05385	0.64	-1.7
1,108,021	-		DZA65_RS05385	0.64	-1.2
1,108,021	-		DZA65_RS05385	0.64	-0.5
1,108,021	-		DZA65_RS05385	0.64	-0.6
1,108,021	-		DZA65_RS05385	0.64	-0.3
1,108,138	+		DZA65_RS05385	0.74	-0.2
1,108,154	+		DZA65_RS05385	0.75	-0.2
1,108,154	+		DZA65_RS05385	0.75	-0.9
1,108,154	+		DZA65_RS05385	0.75	-0.8
1,108,155	-		DZA65_RS05385	0.75	-1.0
1,108,155	-				-2.2
1,108,155	-		DZA65_RS05385	0.75	-1.2
1,108,328	+		DZA65_RS05385	0.89	-2.2
1,108,328	+		DZA65_RS05385	0.89	-0.0
1,108,328	+		DZA65_RS05385	0.89	+0.1
1,108,328	+		DZA65_RS05385	0.89	-1.1
1,108,328	+		DZA65_RS05385	0.89	-1.0
1,108,328	+		DZA65_RS05385	0.89	-3.0
1,108,329	-		DZA65_RS05385	0.89	-0.0
1,108,329	-		DZA65_RS05385	0.89	+1.2
1,108,329	-		DZA65_RS05385	0.89	+1.1
1,108,329	-		DZA65_RS05385	0.89	-2.5
1,108,329	-		DZA65_RS05385	0.89	-1.5
1,108,329	-		DZA65_RS05385	0.89	+1.6
1,108,329	-		DZA65_RS05385	0.89	+0.3
1,108,331	+		DZA65_RS05385	0.90	-1.2
1,108,331	+		DZA65_RS05385	0.90	-0.2
1,108,331	+		DZA65_RS05385	0.90	+1.1
1,108,331	+		DZA65_RS05385	0.90	+0.9
1,108,331	+		DZA65_RS05385	0.90	+2.4
1,108,331	+		DZA65_RS05385	0.90	-0.4
1,108,332	-		DZA65_RS05385	0.90	-1.0
1,108,332	-		DZA65_RS05385	0.90	-1.4
1,108,332	-		DZA65_RS05385	0.90	+0.5
1,108,332	-		DZA65_RS05385	0.90	+0.5
1,108,391	+				-0.5
1,108,511	+				+3.1
1,108,511	+				-1.3
1,108,548	-				-0.9
1,108,561	+				+0.1
1,108,561	+				-0.9
1,108,561	+				+2.9
1,108,562	-				+0.8
1,108,562	-				+1.1
1,108,566	+				+1.7
1,108,566	+				+1.3
1,108,567	-				-1.7
1,108,585	-				-1.3
1,108,649	+				-1.2
1,108,650	-				-0.9
1,108,650	-				+0.1
1,108,650	-				+1.3
1,108,650	-				-6.0
1,108,655	+				-1.9
1,108,672	+				-1.0
1,108,797	-				-0.5
1,108,797	-				-1.2
1,108,799	+				-2.6
1,108,799	+				-0.9
1,108,799	+				-2.6
1,108,799	+				-0.5
1,108,799	+				-0.5
1,108,799	+				+0.3
1,108,799	+				-1.9
1,108,800	-				+0.8
1,108,800	-				+0.7
1,108,801	+				-0.9
1,108,801	+				-0.0
1,108,801	+				+0.6
1,108,801	+				-0.0
1,108,801	+				+0.2
1,108,801	+				-1.2
1,108,801	+				+0.6
1,108,802	-				-0.7
1,108,802	-				+0.6
1,108,802	-				+0.9
1,108,802	-				-1.5
1,108,802	-				-2.0
1,108,802	-				-2.7
1,108,802	-				-0.5
1,108,802	-				-2.0
1,108,802	-				+1.1
1,108,806	-				+2.8
1,108,806	-				+0.1
1,108,806	-				-1.4
1,108,835	+				-2.2
1,108,835	+				+1.6
1,108,836	-				+1.7
1,108,836	-				-1.9
1,108,836	-				-0.5
1,108,837	+				+1.4
1,108,837	+				-2.2
1,108,859	+				-1.2
1,108,899	+				+0.5
1,108,900	-				+0.1
1,108,916	-				+0.1
1,109,004	+				-1.9
1,109,005	-				+0.6
1,109,005	-				+0.7
1,109,005	-				+0.0
1,109,120	+		DZA65_RS05390	0.22	-0.9
1,109,120	+		DZA65_RS05390	0.22	+2.3
1,109,120	+		DZA65_RS05390	0.22	+0.5
1,109,120	+		DZA65_RS05390	0.22	-2.7
1,109,121	-		DZA65_RS05390	0.22	+1.1
1,109,121	-		DZA65_RS05390	0.22	-1.3
1,109,121	-		DZA65_RS05390	0.22	+1.5
1,109,121	-		DZA65_RS05390	0.22	-0.9
1,109,185	+		DZA65_RS05390	0.29	-0.9
1,109,273	+		DZA65_RS05390	0.39	-0.5
1,109,396	+		DZA65_RS05390	0.52	-1.2
1,109,405	+		DZA65_RS05390	0.53	+1.0