Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04475 and DZA65_RS04480 are separated by 188 nucleotides DZA65_RS04480 and DZA65_RS04485 are separated by 59 nucleotides
DZA65_RS04475: DZA65_RS04475 - alpha/beta hydrolase, at 933,023 to 933,997
_RS04475
DZA65_RS04480: DZA65_RS04480 - LysR family transcriptional regulator, at 934,186 to 935,088
_RS04480
DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134
_RS04485
Position (kb) 934
935
936 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.212 kb on - strand, within DZA65_RS04475 at 933.212 kb on - strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.216 kb on - strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.286 kb on + strand, within DZA65_RS04475 at 933.286 kb on + strand, within DZA65_RS04475 at 933.308 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.365 kb on + strand, within DZA65_RS04475 at 933.365 kb on + strand, within DZA65_RS04475 at 933.366 kb on - strand, within DZA65_RS04475 at 933.366 kb on - strand, within DZA65_RS04475 at 933.417 kb on + strand, within DZA65_RS04475 at 933.417 kb on + strand, within DZA65_RS04475 at 933.418 kb on - strand, within DZA65_RS04475 at 933.517 kb on - strand, within DZA65_RS04475 at 933.571 kb on + strand, within DZA65_RS04475 at 933.572 kb on - strand, within DZA65_RS04475 at 933.592 kb on - strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.672 kb on - strand, within DZA65_RS04475 at 933.675 kb on + strand, within DZA65_RS04475 at 933.711 kb on + strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.925 kb on + strand at 933.926 kb on - strand at 933.926 kb on - strand at 933.926 kb on - strand at 933.955 kb on + strand at 933.965 kb on + strand at 933.966 kb on - strand at 933.992 kb on - strand at 934.003 kb on - strand at 934.016 kb on - strand at 934.021 kb on + strand at 934.021 kb on + strand at 934.022 kb on - strand at 934.043 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.056 kb on - strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.062 kb on - strand at 934.117 kb on + strand at 934.129 kb on - strand at 934.147 kb on + strand at 934.150 kb on - strand at 934.150 kb on - strand at 934.153 kb on + strand at 934.172 kb on - strand at 934.176 kb on - strand at 934.176 kb on - strand at 934.179 kb on + strand at 934.180 kb on - strand at 934.190 kb on + strand at 934.191 kb on - strand at 934.191 kb on - strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.195 kb on - strand at 934.196 kb on + strand at 934.196 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.211 kb on - strand at 934.211 kb on - strand at 934.213 kb on + strand at 934.213 kb on + strand at 934.266 kb on + strand at 934.267 kb on - strand at 934.333 kb on - strand, within DZA65_RS04480 at 934.333 kb on - strand, within DZA65_RS04480 at 934.412 kb on - strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.505 kb on - strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.523 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.662 kb on + strand, within DZA65_RS04480 at 934.798 kb on + strand, within DZA65_RS04480 at 934.799 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 935.005 kb on + strand at 935.006 kb on - strand at 935.010 kb on + strand at 935.011 kb on - strand at 935.055 kb on + strand at 935.056 kb on - strand at 935.056 kb on - strand at 935.149 kb on + strand at 935.150 kb on - strand at 935.171 kb on + strand at 935.171 kb on + strand at 935.172 kb on - strand at 935.172 kb on - strand at 935.464 kb on + strand, within DZA65_RS04485 at 935.574 kb on - strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 933,211 + DZA65_RS04475 0.19 +1.1 933,211 + DZA65_RS04475 0.19 -1.2 933,211 + DZA65_RS04475 0.19 +1.1 933,211 + DZA65_RS04475 0.19 +0.5 933,212 - DZA65_RS04475 0.19 +0.5 933,212 - DZA65_RS04475 0.19 +2.1 933,215 + DZA65_RS04475 0.20 -0.5 933,215 + DZA65_RS04475 0.20 -1.7 933,215 + DZA65_RS04475 0.20 -0.7 933,215 + DZA65_RS04475 0.20 +0.1 933,215 + DZA65_RS04475 0.20 +1.1 933,216 - DZA65_RS04475 0.20 -2.2 933,241 + DZA65_RS04475 0.22 -0.5 933,241 + DZA65_RS04475 0.22 -2.7 933,241 + DZA65_RS04475 0.22 -4.1 933,241 + DZA65_RS04475 0.22 -3.0 933,241 + +1.5 933,242 - DZA65_RS04475 0.22 -1.5 933,242 - DZA65_RS04475 0.22 -3.3 933,242 - DZA65_RS04475 0.22 +0.3 933,242 - DZA65_RS04475 0.22 -1.7 933,242 - DZA65_RS04475 0.22 -1.8 933,242 - DZA65_RS04475 0.22 +0.3 933,243 + DZA65_RS04475 0.23 +2.3 933,243 + DZA65_RS04475 0.23 -0.1 933,243 + DZA65_RS04475 0.23 -1.7 933,243 + DZA65_RS04475 0.23 -0.2 933,243 + DZA65_RS04475 0.23 -1.5 933,243 + DZA65_RS04475 0.23 +1.4 933,243 + DZA65_RS04475 0.23 -1.7 933,243 + DZA65_RS04475 0.23 -0.7 933,243 + DZA65_RS04475 0.23 +1.6 933,243 + DZA65_RS04475 0.23 -2.7 933,244 - DZA65_RS04475 0.23 +1.8 933,244 - DZA65_RS04475 0.23 -0.0 933,244 - DZA65_RS04475 0.23 -2.3 933,244 - DZA65_RS04475 0.23 +0.0 933,244 - DZA65_RS04475 0.23 -0.9 933,244 - DZA65_RS04475 0.23 +0.1 933,244 - DZA65_RS04475 0.23 +0.1 933,286 + DZA65_RS04475 0.27 -1.4 933,286 + DZA65_RS04475 0.27 -1.7 933,308 + DZA65_RS04475 0.29 +0.1 933,331 + DZA65_RS04475 0.32 +0.1 933,331 + DZA65_RS04475 0.32 +1.9 933,331 + DZA65_RS04475 0.32 -0.5 933,331 + DZA65_RS04475 0.32 -0.5 933,331 + DZA65_RS04475 0.32 -0.6 933,332 - DZA65_RS04475 0.32 -0.9 933,332 - DZA65_RS04475 0.32 +2.4 933,332 - DZA65_RS04475 0.32 -1.2 933,332 - DZA65_RS04475 0.32 -0.9 933,365 + DZA65_RS04475 0.35 -2.8 933,365 + DZA65_RS04475 0.35 -1.4 933,366 - DZA65_RS04475 0.35 -1.5 933,366 - DZA65_RS04475 0.35 +1.0 933,417 + DZA65_RS04475 0.40 -2.2 933,417 + DZA65_RS04475 0.40 +0.1 933,418 - DZA65_RS04475 0.41 +1.8 933,517 - DZA65_RS04475 0.51 -0.6 933,571 + DZA65_RS04475 0.56 +1.6 933,572 - DZA65_RS04475 0.56 +0.4 933,592 - DZA65_RS04475 0.58 -1.7 933,671 + DZA65_RS04475 0.66 +0.5 933,671 + DZA65_RS04475 0.66 -0.8 933,671 + DZA65_RS04475 0.66 -2.1 933,672 - DZA65_RS04475 0.67 -3.2 933,675 + DZA65_RS04475 0.67 +0.1 933,711 + DZA65_RS04475 0.71 -2.9 933,712 - DZA65_RS04475 0.71 +0.7 933,712 - DZA65_RS04475 0.71 -1.7 933,712 - DZA65_RS04475 0.71 -1.8 933,751 + DZA65_RS04475 0.75 +0.6 933,751 + DZA65_RS04475 0.75 -1.3 933,751 + DZA65_RS04475 0.75 -0.2 933,751 + DZA65_RS04475 0.75 +1.4 933,752 - DZA65_RS04475 0.75 +3.0 933,752 - DZA65_RS04475 0.75 -1.3 933,752 - DZA65_RS04475 0.75 -0.3 933,847 - DZA65_RS04475 0.85 +0.2 933,847 - DZA65_RS04475 0.85 +0.4 933,847 - DZA65_RS04475 0.85 +3.1 933,925 + +0.1 933,926 - +2.9 933,926 - -1.7 933,926 - +2.0 933,955 + -1.5 933,965 + -2.1 933,966 - +0.3 933,992 - +1.1 934,003 - -0.9 934,016 - +1.1 934,021 + -2.8 934,021 + -0.1 934,022 - -2.5 934,043 + -2.6 934,055 + +0.1 934,055 + -0.9 934,055 + -0.9 934,055 + +1.1 934,056 - +2.2 934,061 + +2.5 934,061 + -1.7 934,061 + -3.6 934,061 + +0.6 934,062 - +1.2 934,117 + -1.3 934,129 - -1.5 934,147 + -1.2 934,150 - -0.2 934,150 - -1.7 934,153 + +0.5 934,172 - -0.2 934,176 - +4.3 934,176 - +0.7 934,179 + -1.5 934,180 - -3.1 934,190 + -1.2 934,191 - -0.9 934,191 - +1.1 934,194 + +2.1 934,194 + +0.5 934,194 + -1.7 934,194 + +0.1 934,194 + -0.2 934,195 - -0.3 934,196 + -0.5 934,196 + -0.9 934,210 + -1.9 934,210 + -1.5 934,210 + -0.5 934,211 - -2.1 934,211 - +0.6 934,213 + -1.5 934,213 + +1.3 934,266 + -1.7 934,267 - +0.7 934,333 - DZA65_RS04480 0.16 -0.9 934,333 - DZA65_RS04480 0.16 -0.2 934,412 - DZA65_RS04480 0.25 +1.1 934,414 + DZA65_RS04480 0.25 -2.2 934,414 + DZA65_RS04480 0.25 -0.5 934,505 - DZA65_RS04480 0.35 +0.3 934,507 + DZA65_RS04480 0.36 -2.7 934,507 + DZA65_RS04480 0.36 +0.5 934,523 + DZA65_RS04480 0.37 +0.7 934,560 + DZA65_RS04480 0.41 +1.2 934,560 + DZA65_RS04480 0.41 -1.7 934,560 + DZA65_RS04480 0.41 -2.3 934,560 + DZA65_RS04480 0.41 -1.7 934,561 - DZA65_RS04480 0.42 -0.5 934,561 - DZA65_RS04480 0.42 -0.1 934,642 + DZA65_RS04480 0.50 +0.8 934,642 + DZA65_RS04480 0.50 -0.8 934,642 + DZA65_RS04480 0.50 -1.1 934,642 + DZA65_RS04480 0.50 -0.7 934,643 - DZA65_RS04480 0.51 -0.5 934,643 - DZA65_RS04480 0.51 -1.5 934,643 - DZA65_RS04480 0.51 -3.1 934,662 + DZA65_RS04480 0.53 +0.1 934,798 + DZA65_RS04480 0.68 -0.2 934,799 - DZA65_RS04480 0.68 +0.2 934,879 - DZA65_RS04480 0.77 +0.1 934,879 - DZA65_RS04480 0.77 +2.2 934,916 + DZA65_RS04480 0.81 -1.2 934,916 + DZA65_RS04480 0.81 +2.1 934,916 + DZA65_RS04480 0.81 +0.8 934,916 + DZA65_RS04480 0.81 -2.3 934,916 + DZA65_RS04480 0.81 -2.5 934,916 + DZA65_RS04480 0.81 +1.7 934,916 + DZA65_RS04480 0.81 +0.1 934,917 - DZA65_RS04480 0.81 +2.6 934,917 - DZA65_RS04480 0.81 +1.1 934,917 - DZA65_RS04480 0.81 +3.3 934,917 - DZA65_RS04480 0.81 -1.7 934,917 - +1.7 934,917 - DZA65_RS04480 0.81 +0.7 934,917 - DZA65_RS04480 0.81 +0.5 935,005 + -0.2 935,006 - -1.5 935,010 + -1.9 935,011 - -0.3 935,055 + -1.5 935,056 - +3.7 935,056 - -2.3 935,149 + -0.5 935,150 - -0.9 935,171 + -0.9 935,171 + -0.8 935,172 - -1.1 935,172 - +1.2 935,464 + DZA65_RS04485 0.32 -0.3 935,574 - DZA65_RS04485 0.43 +0.5 935,575 + DZA65_RS04485 0.43 -2.1 935,575 + DZA65_RS04485 0.43 +2.8 935,575 + DZA65_RS04485 0.43 -0.9 935,575 + DZA65_RS04485 0.43 -0.5 935,575 + DZA65_RS04485 0.43 -2.5 935,575 + DZA65_RS04485 0.43 +0.8 935,576 - DZA65_RS04485 0.43 -1.5 935,576 - DZA65_RS04485 0.43 -2.0 935,576 - DZA65_RS04485 0.43 +0.6 935,576 - DZA65_RS04485 0.43 -0.0 935,576 - DZA65_RS04485 0.43 -1.5 935,576 - DZA65_RS04485 0.43 -0.5 936,058 + -1.5 936,058 + -1.9 936,058 + -2.7 936,058 + -0.8 936,058 + +1.1 936,058 + +1.1 936,059 - +0.1 936,059 - -1.7 936,059 - -0.3 936,059 - +0.1 936,059 - +2.1
Or see this region's nucleotide sequence