Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04290 and DZA65_RS04295 are separated by 113 nucleotides DZA65_RS04295 and DZA65_RS04300 are separated by 354 nucleotides DZA65_RS04300 and DZA65_RS04305 are separated by 15 nucleotides
DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429
_RS04290
DZA65_RS04295: DZA65_RS04295 - transcriptional regulator, at 896,543 to 896,830
_RS04295
DZA65_RS04300: DZA65_RS04300 - LuxR family transcriptional regulator, at 897,185 to 897,874
_RS04300
DZA65_RS04305: DZA65_RS04305 - cytosine permease, at 897,890 to 899,185
_RS04305
Position (kb) 897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 896.340 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.343 kb on - strand at 896.343 kb on - strand at 896.362 kb on + strand at 896.363 kb on - strand at 896.363 kb on - strand at 896.438 kb on - strand at 896.448 kb on + strand at 896.511 kb on + strand at 896.511 kb on + strand at 896.512 kb on - strand at 896.512 kb on - strand at 896.541 kb on - strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.575 kb on + strand, within DZA65_RS04295 at 896.575 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.661 kb on - strand, within DZA65_RS04295 at 896.703 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.706 kb on - strand, within DZA65_RS04295 at 896.835 kb on + strand at 896.855 kb on - strand at 896.879 kb on + strand at 896.906 kb on - strand at 896.917 kb on - strand at 896.945 kb on + strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.984 kb on + strand at 896.984 kb on + strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.987 kb on - strand at 897.006 kb on - strand at 897.076 kb on + strand at 897.108 kb on - strand at 897.175 kb on + strand at 897.216 kb on - strand at 897.220 kb on - strand at 897.229 kb on + strand at 897.293 kb on + strand, within DZA65_RS04300 at 897.293 kb on + strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.295 kb on + strand, within DZA65_RS04300 at 897.296 kb on - strand at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.317 kb on + strand, within DZA65_RS04300 at 897.318 kb on - strand, within DZA65_RS04300 at 897.326 kb on - strand, within DZA65_RS04300 at 897.592 kb on + strand, within DZA65_RS04300 at 897.593 kb on - strand, within DZA65_RS04300 at 897.605 kb on - strand, within DZA65_RS04300 at 897.605 kb on - strand, within DZA65_RS04300 at 897.630 kb on + strand, within DZA65_RS04300 at 897.630 kb on + strand, within DZA65_RS04300 at 897.630 kb on + strand, within DZA65_RS04300 at 897.630 kb on + strand, within DZA65_RS04300 at 897.631 kb on - strand, within DZA65_RS04300 at 897.631 kb on - strand, within DZA65_RS04300 at 897.631 kb on - strand, within DZA65_RS04300 at 897.631 kb on - strand, within DZA65_RS04300 at 897.750 kb on + strand, within DZA65_RS04300 at 897.750 kb on + strand at 897.750 kb on + strand, within DZA65_RS04300 at 897.750 kb on + strand, within DZA65_RS04300 at 897.751 kb on - strand, within DZA65_RS04300 at 897.751 kb on - strand, within DZA65_RS04300 at 897.751 kb on - strand, within DZA65_RS04300 at 897.751 kb on - strand, within DZA65_RS04300 at 897.751 kb on - strand, within DZA65_RS04300 at 897.761 kb on + strand, within DZA65_RS04300 at 897.761 kb on + strand, within DZA65_RS04300 at 897.761 kb on + strand, within DZA65_RS04300 at 897.761 kb on + strand, within DZA65_RS04300 at 897.761 kb on + strand, within DZA65_RS04300 at 897.762 kb on - strand, within DZA65_RS04300 at 897.810 kb on - strand at 897.832 kb on + strand at 897.832 kb on + strand at 897.833 kb on - strand at 897.864 kb on + strand at 897.864 kb on + strand at 897.864 kb on + strand at 897.864 kb on + strand at 897.865 kb on - strand at 897.865 kb on - strand at 897.865 kb on - strand at 897.865 kb on - strand at 897.865 kb on - strand at 897.908 kb on + strand at 897.952 kb on + strand at 897.952 kb on + strand at 897.953 kb on - strand at 897.970 kb on + strand at 897.970 kb on + strand at 897.970 kb on + strand at 897.970 kb on + strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.976 kb on + strand at 898.000 kb on + strand at 898.103 kb on + strand at 898.224 kb on + strand, within DZA65_RS04305 at 898.224 kb on + strand, within DZA65_RS04305 at 898.252 kb on + strand, within DZA65_RS04305 at 898.252 kb on + strand, within DZA65_RS04305 at 898.321 kb on - strand, within DZA65_RS04305 at 898.381 kb on + strand, within DZA65_RS04305 at 898.381 kb on + strand, within DZA65_RS04305 at 898.397 kb on + strand, within DZA65_RS04305 at 898.398 kb on - strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.399 kb on + strand, within DZA65_RS04305 at 898.400 kb on - strand, within DZA65_RS04305 at 898.400 kb on - strand, within DZA65_RS04305 at 898.400 kb on - strand, within DZA65_RS04305 at 898.400 kb on - strand, within DZA65_RS04305 at 898.468 kb on + strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.548 kb on - strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.713 kb on + strand, within DZA65_RS04305 at 898.749 kb on - strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.837 kb on + strand, within DZA65_RS04305 at 898.838 kb on - strand, within DZA65_RS04305
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 896,340 + +0.3 896,342 + -1.5 896,342 + -1.7 896,342 + +0.1 896,343 - +2.5 896,343 - -0.9 896,362 + -0.1 896,363 - -1.3 896,363 - -1.5 896,438 - -1.2 896,448 + -0.5 896,511 + -0.0 896,511 + -1.4 896,512 - +1.9 896,512 - +0.1 896,541 - -0.9 896,552 + -2.5 896,552 + +1.7 896,552 + +1.1 896,575 + DZA65_RS04295 0.11 -2.2 896,575 + DZA65_RS04295 0.11 -2.0 896,622 + DZA65_RS04295 0.27 -0.9 896,622 + DZA65_RS04295 0.27 -2.5 896,661 - DZA65_RS04295 0.41 -4.0 896,703 + DZA65_RS04295 0.56 -1.5 896,705 + DZA65_RS04295 0.56 -1.6 896,705 + DZA65_RS04295 0.56 +0.3 896,706 - DZA65_RS04295 0.57 -1.5 896,835 + +1.5 896,855 - -0.1 896,879 + -0.7 896,906 - -2.2 896,917 - -2.2 896,945 + -1.5 896,946 - +3.0 896,946 - +0.7 896,946 - +2.5 896,984 + +2.1 896,984 + -1.5 896,985 - +3.3 896,985 - +2.0 896,985 - -0.7 896,985 - +2.5 896,987 - +1.5 897,006 - +0.5 897,076 + -2.7 897,108 - +0.8 897,175 + +2.8 897,216 - +3.1 897,220 - +1.5 897,229 + +0.4 897,293 + DZA65_RS04300 0.16 -0.5 897,293 + DZA65_RS04300 0.16 -0.5 897,294 - DZA65_RS04300 0.16 -1.5 897,294 - DZA65_RS04300 0.16 +3.5 897,294 - DZA65_RS04300 0.16 -1.2 897,294 - DZA65_RS04300 0.16 +0.7 897,294 - DZA65_RS04300 0.16 +1.0 897,294 - DZA65_RS04300 0.16 -1.1 897,294 - DZA65_RS04300 0.16 -0.9 897,294 - DZA65_RS04300 0.16 +2.8 897,294 - DZA65_RS04300 0.16 -2.5 897,295 + DZA65_RS04300 0.16 +2.5 897,296 - -1.5 897,312 - DZA65_RS04300 0.18 +0.1 897,312 - DZA65_RS04300 0.18 +2.5 897,312 - DZA65_RS04300 0.18 -1.0 897,317 + DZA65_RS04300 0.19 +0.1 897,318 - DZA65_RS04300 0.19 -0.0 897,326 - DZA65_RS04300 0.20 +1.9 897,592 + DZA65_RS04300 0.59 +1.0 897,593 - DZA65_RS04300 0.59 -0.3 897,605 - DZA65_RS04300 0.61 -0.5 897,605 - DZA65_RS04300 0.61 -0.9 897,630 + DZA65_RS04300 0.64 -1.2 897,630 + DZA65_RS04300 0.64 +1.9 897,630 + DZA65_RS04300 0.64 +0.3 897,630 + DZA65_RS04300 0.64 +4.6 897,631 - DZA65_RS04300 0.65 -0.9 897,631 - DZA65_RS04300 0.65 -0.9 897,631 - DZA65_RS04300 0.65 -0.2 897,631 - DZA65_RS04300 0.65 +0.4 897,750 + DZA65_RS04300 0.82 +1.9 897,750 + +0.9 897,750 + DZA65_RS04300 0.82 -1.0 897,750 + DZA65_RS04300 0.82 +1.1 897,751 - DZA65_RS04300 0.82 +1.7 897,751 - DZA65_RS04300 0.82 -0.7 897,751 - DZA65_RS04300 0.82 -1.5 897,751 - DZA65_RS04300 0.82 -0.9 897,751 - DZA65_RS04300 0.82 +1.5 897,761 + DZA65_RS04300 0.83 +0.3 897,761 + DZA65_RS04300 0.83 +4.8 897,761 + DZA65_RS04300 0.83 +0.4 897,761 + DZA65_RS04300 0.83 -2.5 897,761 + DZA65_RS04300 0.83 +2.1 897,762 - DZA65_RS04300 0.84 -1.7 897,810 - +1.1 897,832 + +0.4 897,832 + +1.0 897,833 - -2.0 897,864 + -0.2 897,864 + -1.2 897,864 + -0.4 897,864 + -0.6 897,865 - +1.7 897,865 - +0.6 897,865 - +0.6 897,865 - -0.2 897,865 - +1.4 897,908 + +2.3 897,952 + -1.0 897,952 + +0.1 897,953 - +1.6 897,970 + -1.5 897,970 + +1.9 897,970 + +2.3 897,970 + +0.9 897,971 - +1.9 897,971 - +2.2 897,971 - +0.1 897,971 - +0.4 897,971 - +2.1 897,971 - +0.1 897,971 - +0.1 897,976 + -0.4 898,000 + +1.5 898,103 + +2.1 898,224 + DZA65_RS04305 0.26 -1.9 898,224 + DZA65_RS04305 0.26 +2.0 898,252 + DZA65_RS04305 0.28 +1.1 898,252 + DZA65_RS04305 0.28 +2.0 898,321 - DZA65_RS04305 0.33 -3.5 898,381 + DZA65_RS04305 0.38 -0.2 898,381 + DZA65_RS04305 0.38 +0.1 898,397 + DZA65_RS04305 0.39 -0.5 898,398 - DZA65_RS04305 0.39 -2.3 898,399 + DZA65_RS04305 0.39 -0.7 898,399 + DZA65_RS04305 0.39 -0.1 898,399 + DZA65_RS04305 0.39 +0.1 898,399 + DZA65_RS04305 0.39 -2.9 898,399 + DZA65_RS04305 0.39 +2.8 898,399 + DZA65_RS04305 0.39 +2.0 898,400 - DZA65_RS04305 0.39 +1.3 898,400 - DZA65_RS04305 0.39 -1.5 898,400 - DZA65_RS04305 0.39 -1.5 898,400 - DZA65_RS04305 0.39 -2.8 898,468 + DZA65_RS04305 0.45 +1.5 898,469 - DZA65_RS04305 0.45 -1.2 898,469 - DZA65_RS04305 0.45 -0.9 898,492 + DZA65_RS04305 0.46 -1.0 898,492 + DZA65_RS04305 0.46 +0.5 898,492 + DZA65_RS04305 0.46 -1.5 898,493 - DZA65_RS04305 0.47 +3.0 898,493 - DZA65_RS04305 0.47 -0.0 898,493 - DZA65_RS04305 0.47 -0.0 898,493 - DZA65_RS04305 0.47 -0.9 898,493 - DZA65_RS04305 0.47 -0.5 898,510 + DZA65_RS04305 0.48 +0.9 898,510 + DZA65_RS04305 0.48 +2.1 898,510 + DZA65_RS04305 0.48 +0.3 898,510 + DZA65_RS04305 0.48 -1.2 898,510 + DZA65_RS04305 0.48 +0.5 898,510 + DZA65_RS04305 0.48 -2.9 898,510 + DZA65_RS04305 0.48 +2.6 898,510 + DZA65_RS04305 0.48 +2.6 898,511 - DZA65_RS04305 0.48 -1.9 898,511 - DZA65_RS04305 0.48 -0.5 898,511 - DZA65_RS04305 0.48 +2.0 898,547 + DZA65_RS04305 0.51 -1.2 898,547 + DZA65_RS04305 0.51 +0.1 898,548 - DZA65_RS04305 0.51 -0.2 898,669 + DZA65_RS04305 0.60 +0.4 898,669 + DZA65_RS04305 0.60 -0.5 898,669 + DZA65_RS04305 0.60 +0.4 898,669 + DZA65_RS04305 0.60 +1.4 898,670 - DZA65_RS04305 0.60 -1.3 898,670 - DZA65_RS04305 0.60 +1.3 898,713 + DZA65_RS04305 0.64 -0.7 898,749 - DZA65_RS04305 0.66 +0.7 898,808 + DZA65_RS04305 0.71 -3.1 898,808 + DZA65_RS04305 0.71 -1.9 898,808 + DZA65_RS04305 0.71 +1.3 898,809 - DZA65_RS04305 0.71 -0.5 898,809 - DZA65_RS04305 0.71 +1.4 898,837 + DZA65_RS04305 0.73 +0.1 898,838 - DZA65_RS04305 0.73 -0.7
Or see this region's nucleotide sequence