Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02855 and DZA65_RS02860 are separated by 188 nucleotides DZA65_RS02860 and DZA65_RS02865 are separated by 49 nucleotides
DZA65_RS02855: DZA65_RS02855 - FxsA family protein, at 613,544 to 614,047
_RS02855
DZA65_RS02860: DZA65_RS02860 - co-chaperone GroES, at 614,236 to 614,529
_RS02860
DZA65_RS02865: DZA65_RS02865 - chaperonin GroEL, at 614,579 to 616,225
_RS02865
Position (kb) 614
615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 613.249 kb on + strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.322 kb on - strand at 613.322 kb on - strand at 613.356 kb on + strand at 613.356 kb on + strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.370 kb on + strand at 613.371 kb on - strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.385 kb on - strand at 613.385 kb on - strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.407 kb on + strand at 613.408 kb on - strand at 613.409 kb on + strand at 613.409 kb on + strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.414 kb on + strand at 613.414 kb on + strand at 613.415 kb on - strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.445 kb on + strand at 613.445 kb on + strand at 613.446 kb on - strand at 613.471 kb on + strand at 613.478 kb on + strand at 613.499 kb on - strand at 613.509 kb on - strand at 613.509 kb on - strand at 613.520 kb on - strand at 613.524 kb on - strand at 613.524 kb on - strand at 613.583 kb on + strand at 613.583 kb on + strand at 613.597 kb on + strand, within DZA65_RS02855 at 613.598 kb on - strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.688 kb on - strand, within DZA65_RS02855 at 613.763 kb on - strand, within DZA65_RS02855 at 613.776 kb on + strand, within DZA65_RS02855 at 613.791 kb on + strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 614.100 kb on + strand at 614.100 kb on + strand at 614.100 kb on + strand at 614.101 kb on - strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 613,249 + -2.3 613,250 - -1.6 613,250 - +0.6 613,250 - +0.2 613,321 + +0.1 613,321 + -1.1 613,321 + +2.3 613,321 + -0.8 613,322 - -1.1 613,322 - -1.4 613,356 + -1.2 613,356 + -1.7 613,357 - +1.0 613,357 - +2.2 613,357 - -1.4 613,370 + +0.3 613,371 - +1.2 613,384 + +0.2 613,384 + +0.1 613,384 + +3.2 613,384 + +0.4 613,384 + -0.4 613,385 - +0.0 613,385 - +0.6 613,386 + -0.8 613,386 + +2.2 613,386 + +0.2 613,386 + +1.2 613,386 + -0.4 613,386 + -2.1 613,387 - -2.0 613,387 - +0.4 613,387 - -2.0 613,387 - -0.2 613,387 - +1.4 613,387 - -1.3 613,387 - +2.2 613,387 - -1.3 613,387 - -0.8 613,390 + +0.9 613,390 + -1.1 613,390 + -3.0 613,390 + -1.8 613,390 + -1.8 613,390 + -1.4 613,391 - -0.8 613,391 - +0.7 613,391 - +0.2 613,391 - +0.0 613,391 - -0.6 613,407 + +0.3 613,408 - -0.8 613,409 + -2.7 613,409 + -1.8 613,410 - -0.0 613,410 - -2.7 613,410 - -0.0 613,410 - +0.4 613,410 - -0.8 613,414 + +0.0 613,414 + -1.8 613,415 - +0.4 613,419 + -1.8 613,419 + +0.0 613,419 + -2.9 613,419 + -0.6 613,420 - +1.0 613,420 - -0.4 613,420 - -3.0 613,420 - +0.2 613,437 + +1.2 613,437 + -2.3 613,437 + +2.8 613,438 - -1.4 613,438 - -2.0 613,438 - +1.1 613,438 - -2.0 613,445 + -4.0 613,445 + +1.5 613,446 - -0.4 613,471 + -2.3 613,478 + +1.2 613,499 - +2.2 613,509 - -1.2 613,509 - -0.8 613,520 - -0.7 613,524 - -1.4 613,524 - +2.0 613,583 + -0.5 613,583 + -0.8 613,597 + DZA65_RS02855 0.11 -1.8 613,598 - DZA65_RS02855 0.11 +1.6 613,678 + DZA65_RS02855 0.27 +0.7 613,678 + DZA65_RS02855 0.27 -0.8 613,678 + DZA65_RS02855 0.27 +0.2 613,678 + DZA65_RS02855 0.27 -2.0 613,678 + DZA65_RS02855 0.27 -2.0 613,678 + DZA65_RS02855 0.27 +0.6 613,678 + DZA65_RS02855 0.27 -1.5 613,679 - DZA65_RS02855 0.27 -0.1 613,679 - DZA65_RS02855 0.27 -0.3 613,679 - DZA65_RS02855 0.27 -2.7 613,679 - DZA65_RS02855 0.27 +1.6 613,683 + DZA65_RS02855 0.28 -2.6 613,683 + DZA65_RS02855 0.28 -2.5 613,683 + DZA65_RS02855 0.28 -0.4 613,683 + DZA65_RS02855 0.28 +0.5 613,683 + DZA65_RS02855 0.28 +1.2 613,683 + DZA65_RS02855 0.28 +1.1 613,683 + DZA65_RS02855 0.28 -1.7 613,683 + DZA65_RS02855 0.28 +2.0 613,683 + DZA65_RS02855 0.28 +0.5 613,684 - DZA65_RS02855 0.28 -0.8 613,684 - DZA65_RS02855 0.28 -0.1 613,684 - DZA65_RS02855 0.28 -0.8 613,684 - DZA65_RS02855 0.28 -3.4 613,684 - DZA65_RS02855 0.28 -0.8 613,687 + DZA65_RS02855 0.28 -0.3 613,687 + DZA65_RS02855 0.28 -1.4 613,688 - DZA65_RS02855 0.29 -2.8 613,763 - DZA65_RS02855 0.43 -1.4 613,776 + DZA65_RS02855 0.46 +0.5 613,791 + DZA65_RS02855 0.49 +0.4 613,792 - DZA65_RS02855 0.49 +1.0 613,792 - DZA65_RS02855 0.49 -0.4 613,792 - DZA65_RS02855 0.49 -2.1 614,100 + +0.2 614,100 + +0.8 614,100 + -2.0 614,101 - +0.8 614,154 + +1.7 614,154 + +0.3 614,154 + -2.0 614,154 + -0.7 614,154 + +0.5 614,154 + +0.9
Or see this region's nucleotide sequence