Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01535 and DZA65_RS01540 are separated by 30 nucleotides DZA65_RS01540 and DZA65_RS01545 are separated by 280 nucleotides
DZA65_RS01535: DZA65_RS01535 - arabinose-5-phosphate isomerase KdsD, at 335,433 to 336,419
_RS01535
DZA65_RS01540: DZA65_RS01540 - calcium/sodium antiporter, at 336,450 to 337,412
_RS01540
DZA65_RS01545: DZA65_RS01545 - phospholipid ABC transporter ATP-binding protein MlaF, at 337,693 to 338,502
_RS01545
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 336.443 kb on - strand at 336.443 kb on - strand at 336.443 kb on - strand at 336.452 kb on - strand at 336.479 kb on - strand at 336.479 kb on - strand at 336.587 kb on - strand, within DZA65_RS01540 at 336.651 kb on + strand, within DZA65_RS01540 at 336.651 kb on + strand, within DZA65_RS01540 at 336.652 kb on - strand, within DZA65_RS01540 at 336.662 kb on + strand, within DZA65_RS01540 at 336.668 kb on + strand, within DZA65_RS01540 at 336.668 kb on + strand, within DZA65_RS01540 at 336.668 kb on + strand, within DZA65_RS01540 at 336.669 kb on - strand, within DZA65_RS01540 at 336.720 kb on - strand, within DZA65_RS01540 at 336.797 kb on + strand, within DZA65_RS01540 at 336.798 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.805 kb on + strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.883 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 337.172 kb on + strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.296 kb on - strand, within DZA65_RS01540 at 337.343 kb on - strand at 337.343 kb on - strand at 337.343 kb on - strand at 337.364 kb on - strand at 337.371 kb on + strand at 337.389 kb on + strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.425 kb on - strand at 337.425 kb on - strand at 337.432 kb on + strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.434 kb on + strand at 337.434 kb on + strand at 337.435 kb on - strand at 337.435 kb on - strand at 337.447 kb on - strand at 337.478 kb on + strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.514 kb on - strand at 337.514 kb on - strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.578 kb on - strand at 337.578 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.605 kb on + strand at 337.606 kb on - strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.899 kb on + strand, within DZA65_RS01545 at 337.899 kb on + strand, within DZA65_RS01545 at 337.900 kb on - strand, within DZA65_RS01545 at 338.025 kb on + strand, within DZA65_RS01545 at 338.026 kb on - strand, within DZA65_RS01545 at 338.245 kb on - strand, within DZA65_RS01545 at 338.326 kb on + strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.337 kb on + strand, within DZA65_RS01545
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 336,443 - +1.8 336,443 - -1.7 336,443 - -0.3 336,452 - -1.8 336,479 - -2.2 336,479 - +2.3 336,587 - DZA65_RS01540 0.14 +0.8 336,651 + DZA65_RS01540 0.21 -1.1 336,651 + DZA65_RS01540 0.21 -2.0 336,652 - DZA65_RS01540 0.21 -1.1 336,662 + DZA65_RS01540 0.22 -0.4 336,668 + DZA65_RS01540 0.23 -0.7 336,668 + DZA65_RS01540 0.23 +1.3 336,668 + DZA65_RS01540 0.23 +0.2 336,669 - DZA65_RS01540 0.23 -2.1 336,720 - DZA65_RS01540 0.28 +0.0 336,797 + DZA65_RS01540 0.36 -1.5 336,798 - DZA65_RS01540 0.36 -1.1 336,801 - DZA65_RS01540 0.36 -0.3 336,801 - DZA65_RS01540 0.36 +0.5 336,801 - DZA65_RS01540 0.36 -0.7 336,801 - DZA65_RS01540 0.36 -0.7 336,805 + DZA65_RS01540 0.37 -2.3 336,806 - -0.7 336,806 - DZA65_RS01540 0.37 -0.7 336,806 - DZA65_RS01540 0.37 +0.2 336,806 - +0.7 336,806 - DZA65_RS01540 0.37 -1.4 336,861 - DZA65_RS01540 0.43 +0.5 336,861 - DZA65_RS01540 0.43 +3.7 336,861 - DZA65_RS01540 0.43 -1.3 336,883 - DZA65_RS01540 0.45 -1.3 336,996 - DZA65_RS01540 0.57 -0.3 336,996 - DZA65_RS01540 0.57 +1.7 336,996 - DZA65_RS01540 0.57 -0.1 337,172 + DZA65_RS01540 0.75 -1.3 337,173 - DZA65_RS01540 0.75 -2.5 337,173 - DZA65_RS01540 0.75 +2.3 337,194 + DZA65_RS01540 0.77 -0.9 337,194 + DZA65_RS01540 0.77 -1.5 337,194 + DZA65_RS01540 0.77 +0.1 337,194 + DZA65_RS01540 0.77 -1.5 337,195 - DZA65_RS01540 0.77 -2.1 337,195 - DZA65_RS01540 0.77 -0.3 337,279 - DZA65_RS01540 0.86 -1.1 337,279 - DZA65_RS01540 0.86 -0.3 337,279 - DZA65_RS01540 0.86 -1.5 337,279 - DZA65_RS01540 0.86 +1.3 337,279 - DZA65_RS01540 0.86 -0.3 337,279 - DZA65_RS01540 0.86 +1.7 337,296 - DZA65_RS01540 0.88 +0.5 337,343 - +2.0 337,343 - +1.0 337,343 - -0.3 337,364 - -2.3 337,371 + -1.9 337,389 + +0.7 337,390 - +1.3 337,390 - -0.6 337,390 - -1.7 337,425 - -0.5 337,425 - +1.3 337,432 + +0.7 337,433 - +0.2 337,433 - +0.6 337,433 - -0.6 337,433 - +0.3 337,434 + -1.1 337,434 + +1.5 337,435 - -1.1 337,435 - -1.3 337,447 - +1.3 337,478 + -1.1 337,479 - -2.3 337,479 - -1.1 337,479 - -0.3 337,514 - +0.3 337,514 - -0.3 337,577 + +0.4 337,577 + -0.7 337,577 + -1.2 337,578 - -1.1 337,578 - +1.7 337,592 - -1.7 337,592 - -1.3 337,592 - -1.5 337,592 - +0.7 337,592 - -1.3 337,605 + +2.4 337,606 - -0.6 337,687 + -2.8 337,687 + +1.5 337,687 + +0.3 337,688 - +0.7 337,688 - +0.3 337,688 - -0.9 337,899 + DZA65_RS01545 0.25 -1.3 337,899 + DZA65_RS01545 0.25 -1.7 337,900 - DZA65_RS01545 0.26 -0.7 338,025 + DZA65_RS01545 0.41 -1.1 338,026 - DZA65_RS01545 0.41 -1.3 338,245 - DZA65_RS01545 0.68 +1.3 338,326 + DZA65_RS01545 0.78 +2.2 338,327 - DZA65_RS01545 0.78 -2.1 338,327 - DZA65_RS01545 0.78 +0.3 338,332 + DZA65_RS01545 0.79 -1.3 338,332 + DZA65_RS01545 0.79 +1.3 338,333 - DZA65_RS01545 0.79 -2.7 338,333 - DZA65_RS01545 0.79 +0.3 338,333 - DZA65_RS01545 0.79 -0.7 338,333 - DZA65_RS01545 0.79 -1.1 338,333 - DZA65_RS01545 0.79 -0.3 338,333 - DZA65_RS01545 0.79 -1.2 338,333 - DZA65_RS01545 0.79 -0.7 338,333 - DZA65_RS01545 0.79 -1.3 338,337 + DZA65_RS01545 0.80 -0.3
Or see this region's nucleotide sequence