Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19935 and DZA65_RS19940 are separated by 368 nucleotides DZA65_RS19940 and DZA65_RS19945 are separated by 71 nucleotides DZA65_RS19945 and DZA65_RS19950 are separated by 14 nucleotides
DZA65_RS19935: DZA65_RS19935 - flavodoxin, at 4,314,786 to 4,315,316
_RS19935
DZA65_RS19940: DZA65_RS19940 - IS630 family transposase, at 4,315,685 to 4,316,311
_RS19940
DZA65_RS19945: DZA65_RS19945 - nitrogen fixation protein NifM, at 4,316,383 to 4,317,168
_RS19945
DZA65_RS19950: DZA65_RS19950 - nitrogen fixation protein NifZ, at 4,317,183 to 4,317,626
_RS19950
Position (kb) 4315
4316
4317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4314.769 kb on + strand at 4314.769 kb on + strand at 4314.769 kb on + strand at 4314.770 kb on - strand at 4314.770 kb on - strand at 4314.770 kb on - strand at 4314.770 kb on - strand at 4314.770 kb on - strand at 4314.770 kb on - strand at 4314.779 kb on + strand at 4314.838 kb on + strand at 4314.838 kb on + strand at 4315.125 kb on + strand, within DZA65_RS19935 at 4315.125 kb on + strand, within DZA65_RS19935 at 4315.126 kb on - strand, within DZA65_RS19935 at 4315.126 kb on - strand, within DZA65_RS19935 at 4315.132 kb on + strand, within DZA65_RS19935 at 4315.132 kb on + strand, within DZA65_RS19935 at 4315.132 kb on + strand, within DZA65_RS19935 at 4315.132 kb on + strand, within DZA65_RS19935 at 4315.132 kb on + strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.133 kb on - strand, within DZA65_RS19935 at 4315.314 kb on + strand at 4315.315 kb on - strand at 4315.340 kb on - strand at 4315.440 kb on - strand at 4315.440 kb on - strand at 4315.503 kb on + strand at 4315.503 kb on + strand at 4315.504 kb on - strand at 4315.511 kb on + strand at 4315.512 kb on - strand at 4315.512 kb on - strand at 4315.512 kb on - strand at 4315.514 kb on + strand at 4315.515 kb on - strand at 4315.515 kb on - strand at 4315.515 kb on - strand at 4315.515 kb on - strand at 4315.515 kb on - strand at 4315.521 kb on + strand at 4315.610 kb on + strand at 4315.611 kb on - strand at 4315.624 kb on + strand at 4315.624 kb on + strand at 4315.646 kb on + strand at 4315.646 kb on + strand at 4315.646 kb on + strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.647 kb on - strand at 4315.648 kb on + strand at 4315.648 kb on + strand at 4315.648 kb on + strand at 4315.649 kb on - strand at 4315.649 kb on - strand at 4315.702 kb on + strand at 4315.702 kb on + strand at 4315.702 kb on + strand at 4315.702 kb on + strand at 4315.702 kb on + strand at 4315.702 kb on + strand at 4315.703 kb on - strand at 4315.703 kb on - strand at 4315.703 kb on - strand at 4315.703 kb on - strand at 4315.721 kb on + strand at 4315.721 kb on + strand at 4315.721 kb on + strand at 4315.722 kb on - strand at 4315.722 kb on - strand at 4315.722 kb on - strand at 4315.841 kb on + strand, within DZA65_RS19940 at 4315.841 kb on + strand, within DZA65_RS19940 at 4315.841 kb on + strand, within DZA65_RS19940 at 4315.841 kb on + strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.842 kb on - strand, within DZA65_RS19940 at 4315.860 kb on + strand, within DZA65_RS19940 at 4315.861 kb on - strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.885 kb on + strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4315.886 kb on - strand, within DZA65_RS19940 at 4316.067 kb on + strand, within DZA65_RS19940 at 4316.068 kb on - strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.091 kb on + strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.092 kb on - strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.095 kb on + strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.096 kb on - strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.097 kb on + strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.098 kb on - strand, within DZA65_RS19940 at 4316.155 kb on + strand, within DZA65_RS19940 at 4316.156 kb on - strand, within DZA65_RS19940 at 4316.177 kb on + strand, within DZA65_RS19940 at 4316.178 kb on - strand, within DZA65_RS19940 at 4316.282 kb on + strand at 4316.312 kb on + strand at 4316.312 kb on + strand at 4316.313 kb on - strand at 4316.313 kb on - strand at 4316.313 kb on - strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.335 kb on - strand at 4316.335 kb on - strand at 4316.343 kb on + strand at 4316.344 kb on - strand at 4316.353 kb on + strand at 4316.353 kb on + strand at 4316.354 kb on - strand at 4316.354 kb on - strand at 4316.354 kb on - strand at 4316.371 kb on - strand at 4316.371 kb on - strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.385 kb on - strand at 4316.385 kb on - strand at 4316.385 kb on - strand at 4316.438 kb on + strand at 4316.743 kb on - strand, within DZA65_RS19945 at 4316.817 kb on - strand, within DZA65_RS19945 at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.254 kb on + strand, within DZA65_RS19950 at 4317.255 kb on - strand, within DZA65_RS19950 at 4317.255 kb on - strand, within DZA65_RS19950
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 4,314,769 + +0.7 4,314,769 + -0.7 4,314,769 + -1.7 4,314,770 - -0.9 4,314,770 - -1.2 4,314,770 - -1.2 4,314,770 - -1.9 4,314,770 - -0.2 4,314,770 - +2.1 4,314,779 + -0.1 4,314,838 + -0.3 4,314,838 + +1.3 4,315,125 + DZA65_RS19935 0.64 -2.1 4,315,125 + DZA65_RS19935 0.64 -1.3 4,315,126 - DZA65_RS19935 0.64 +0.4 4,315,126 - DZA65_RS19935 0.64 +1.3 4,315,132 + DZA65_RS19935 0.65 +0.8 4,315,132 + DZA65_RS19935 0.65 -0.5 4,315,132 + DZA65_RS19935 0.65 +0.8 4,315,132 + DZA65_RS19935 0.65 -0.8 4,315,132 + DZA65_RS19935 0.65 +0.2 4,315,133 - DZA65_RS19935 0.65 -1.6 4,315,133 - DZA65_RS19935 0.65 +1.7 4,315,133 - DZA65_RS19935 0.65 +0.8 4,315,133 - DZA65_RS19935 0.65 +0.5 4,315,133 - DZA65_RS19935 0.65 +0.4 4,315,133 - DZA65_RS19935 0.65 -2.6 4,315,133 - DZA65_RS19935 0.65 -0.1 4,315,133 - DZA65_RS19935 0.65 -1.1 4,315,133 - DZA65_RS19935 0.65 +1.6 4,315,133 - DZA65_RS19935 0.65 -0.5 4,315,314 + +0.8 4,315,315 - -1.7 4,315,340 - -1.0 4,315,440 - +2.1 4,315,440 - +2.1 4,315,503 + -1.0 4,315,503 + -2.2 4,315,504 - -2.2 4,315,511 + -1.2 4,315,512 - +1.1 4,315,512 - -1.2 4,315,512 - -1.7 4,315,514 + +1.1 4,315,515 - +1.4 4,315,515 - -0.9 4,315,515 - -2.3 4,315,515 - +0.0 4,315,515 - +1.4 4,315,521 + +1.4 4,315,610 + +3.6 4,315,611 - +0.9 4,315,624 + +1.1 4,315,624 + +0.3 4,315,646 + +1.2 4,315,646 + -0.9 4,315,646 + -1.2 4,315,647 - -0.9 4,315,647 - +2.1 4,315,647 - +0.5 4,315,647 - -0.7 4,315,647 - -0.3 4,315,647 - +0.1 4,315,647 - -1.0 4,315,648 + +0.7 4,315,648 + +1.6 4,315,648 + -2.4 4,315,649 - +0.8 4,315,649 - +1.3 4,315,702 + -3.2 4,315,702 + -0.9 4,315,702 + -1.8 4,315,702 + +0.2 4,315,702 + -0.5 4,315,702 + -1.2 4,315,703 - +2.1 4,315,703 - +0.1 4,315,703 - +1.1 4,315,703 - -0.7 4,315,721 + +1.1 4,315,721 + +0.1 4,315,721 + -1.3 4,315,722 - -0.7 4,315,722 - +0.5 4,315,722 - +0.1 4,315,841 + DZA65_RS19940 0.25 -1.7 4,315,841 + DZA65_RS19940 0.25 -1.7 4,315,841 + DZA65_RS19940 0.25 +0.9 4,315,841 + DZA65_RS19940 0.25 -0.8 4,315,842 - DZA65_RS19940 0.25 +0.7 4,315,842 - DZA65_RS19940 0.25 +1.4 4,315,842 - DZA65_RS19940 0.25 -0.4 4,315,842 - DZA65_RS19940 0.25 +0.3 4,315,842 - DZA65_RS19940 0.25 +0.5 4,315,842 - DZA65_RS19940 0.25 +0.4 4,315,842 - DZA65_RS19940 0.25 -0.7 4,315,860 + DZA65_RS19940 0.28 -0.5 4,315,861 - DZA65_RS19940 0.28 -1.7 4,315,885 + DZA65_RS19940 0.32 +0.3 4,315,885 + DZA65_RS19940 0.32 +0.4 4,315,885 + DZA65_RS19940 0.32 -0.3 4,315,885 + DZA65_RS19940 0.32 +0.5 4,315,885 + DZA65_RS19940 0.32 +0.1 4,315,885 + DZA65_RS19940 0.32 -1.2 4,315,885 + DZA65_RS19940 0.32 -0.9 4,315,886 - DZA65_RS19940 0.32 -0.5 4,315,886 - DZA65_RS19940 0.32 +0.4 4,315,886 - DZA65_RS19940 0.32 -0.5 4,315,886 - DZA65_RS19940 0.32 -0.5 4,315,886 - DZA65_RS19940 0.32 +0.4 4,315,886 - DZA65_RS19940 0.32 +0.9 4,315,886 - DZA65_RS19940 0.32 +0.1 4,315,886 - DZA65_RS19940 0.32 +0.7 4,315,886 - DZA65_RS19940 0.32 +2.9 4,315,886 - DZA65_RS19940 0.32 +0.7 4,315,886 - DZA65_RS19940 0.32 +1.6 4,315,886 - DZA65_RS19940 0.32 +0.1 4,315,886 - DZA65_RS19940 0.32 -0.9 4,315,886 - DZA65_RS19940 0.32 +0.3 4,316,067 + DZA65_RS19940 0.61 +0.2 4,316,068 - DZA65_RS19940 0.61 -0.0 4,316,091 + DZA65_RS19940 0.65 +0.7 4,316,091 + DZA65_RS19940 0.65 -0.5 4,316,091 + DZA65_RS19940 0.65 +0.5 4,316,091 + DZA65_RS19940 0.65 +0.0 4,316,091 + DZA65_RS19940 0.65 +0.1 4,316,091 + DZA65_RS19940 0.65 -0.9 4,316,091 + DZA65_RS19940 0.65 +1.7 4,316,092 - DZA65_RS19940 0.65 -0.3 4,316,092 - DZA65_RS19940 0.65 +1.1 4,316,092 - DZA65_RS19940 0.65 +0.1 4,316,092 - DZA65_RS19940 0.65 +0.4 4,316,092 - DZA65_RS19940 0.65 +0.2 4,316,092 - DZA65_RS19940 0.65 +1.1 4,316,092 - DZA65_RS19940 0.65 +0.1 4,316,095 + DZA65_RS19940 0.65 -0.5 4,316,095 + DZA65_RS19940 0.65 -0.2 4,316,095 + DZA65_RS19940 0.65 -1.2 4,316,095 + DZA65_RS19940 0.65 -1.9 4,316,095 + DZA65_RS19940 0.65 -0.9 4,316,095 + -1.5 4,316,095 + DZA65_RS19940 0.65 +0.8 4,316,095 + DZA65_RS19940 0.65 -1.9 4,316,095 + DZA65_RS19940 0.65 -1.3 4,316,095 + DZA65_RS19940 0.65 -0.1 4,316,095 + DZA65_RS19940 0.65 +1.8 4,316,095 + DZA65_RS19940 0.65 +0.4 4,316,095 + DZA65_RS19940 0.65 +0.8 4,316,095 + -0.5 4,316,095 + DZA65_RS19940 0.65 -1.7 4,316,095 + DZA65_RS19940 0.65 -0.4 4,316,095 + DZA65_RS19940 0.65 +0.1 4,316,095 + DZA65_RS19940 0.65 -1.9 4,316,095 + DZA65_RS19940 0.65 -0.3 4,316,095 + DZA65_RS19940 0.65 -1.7 4,316,095 + DZA65_RS19940 0.65 -0.6 4,316,095 + DZA65_RS19940 0.65 +0.6 4,316,096 - DZA65_RS19940 0.66 +0.9 4,316,096 - DZA65_RS19940 0.66 +0.7 4,316,096 - DZA65_RS19940 0.66 +0.5 4,316,096 - +0.8 4,316,096 - DZA65_RS19940 0.66 +1.7 4,316,096 - DZA65_RS19940 0.66 -1.0 4,316,096 - DZA65_RS19940 0.66 +1.1 4,316,096 - DZA65_RS19940 0.66 +0.5 4,316,096 - DZA65_RS19940 0.66 +0.8 4,316,096 - DZA65_RS19940 0.66 -1.5 4,316,096 - DZA65_RS19940 0.66 +0.3 4,316,096 - DZA65_RS19940 0.66 +0.5 4,316,096 - DZA65_RS19940 0.66 +0.1 4,316,096 - DZA65_RS19940 0.66 +1.1 4,316,096 - DZA65_RS19940 0.66 -0.6 4,316,096 - DZA65_RS19940 0.66 -1.1 4,316,096 - DZA65_RS19940 0.66 +2.1 4,316,096 - DZA65_RS19940 0.66 +1.3 4,316,096 - DZA65_RS19940 0.66 +3.0 4,316,097 + DZA65_RS19940 0.66 +0.2 4,316,097 + DZA65_RS19940 0.66 +0.4 4,316,097 + DZA65_RS19940 0.66 +0.1 4,316,097 + DZA65_RS19940 0.66 +0.4 4,316,097 + DZA65_RS19940 0.66 -1.9 4,316,097 + DZA65_RS19940 0.66 +1.7 4,316,097 + DZA65_RS19940 0.66 +0.5 4,316,097 + DZA65_RS19940 0.66 -1.5 4,316,097 + DZA65_RS19940 0.66 +0.9 4,316,097 + DZA65_RS19940 0.66 +1.1 4,316,097 + DZA65_RS19940 0.66 +1.4 4,316,098 - DZA65_RS19940 0.66 +0.1 4,316,098 - DZA65_RS19940 0.66 -0.1 4,316,098 - DZA65_RS19940 0.66 -0.7 4,316,098 - DZA65_RS19940 0.66 -1.7 4,316,098 - DZA65_RS19940 0.66 -0.1 4,316,098 - DZA65_RS19940 0.66 -0.5 4,316,098 - DZA65_RS19940 0.66 -0.1 4,316,155 + DZA65_RS19940 0.75 +0.4 4,316,156 - DZA65_RS19940 0.75 +1.1 4,316,177 + DZA65_RS19940 0.78 +0.4 4,316,178 - DZA65_RS19940 0.79 +1.1 4,316,282 + -1.4 4,316,312 + +1.1 4,316,312 + +0.3 4,316,313 - +0.3 4,316,313 - -1.7 4,316,313 - +2.3 4,316,334 + -0.8 4,316,334 + +1.1 4,316,334 + -1.1 4,316,334 + -0.2 4,316,335 - -1.7 4,316,335 - +0.7 4,316,343 + -0.9 4,316,344 - +1.3 4,316,353 + -0.8 4,316,353 + +0.6 4,316,354 - -2.5 4,316,354 - -0.1 4,316,354 - -1.8 4,316,371 - +0.1 4,316,371 - +3.1 4,316,384 + -0.4 4,316,384 + -0.5 4,316,384 + -0.5 4,316,384 + +0.1 4,316,384 + +0.7 4,316,385 - -0.3 4,316,385 - -1.1 4,316,385 - -0.9 4,316,438 + +0.3 4,316,743 - DZA65_RS19945 0.46 -1.2 4,316,817 - DZA65_RS19945 0.55 -1.2 4,317,091 + +2.6 4,317,091 + -0.1 4,317,091 + +1.1 4,317,091 + -0.5 4,317,092 - +0.6 4,317,092 - -1.1 4,317,092 - -0.2 4,317,092 - -0.5 4,317,092 - -1.7 4,317,254 + DZA65_RS19950 0.16 +0.2 4,317,255 - DZA65_RS19950 0.16 +3.5 4,317,255 - DZA65_RS19950 0.16 -0.9
Or see this region's nucleotide sequence