Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19595 and DZA65_RS19600 overlap by 8 nucleotides DZA65_RS19600 and DZA65_RS22990 are separated by 176 nucleotides DZA65_RS22990 and DZA65_RS19610 are separated by 187 nucleotides DZA65_RS19610 and DZA65_RS19615 are separated by 110 nucleotides DZA65_RS19615 and DZA65_RS19620 are separated by 99 nucleotides
DZA65_RS19595: DZA65_RS19595 - biosynthetic arginine decarboxylase, at 4,244,834 to 4,246,810
_RS19595
DZA65_RS19600: DZA65_RS19600 - hypothetical protein, at 4,246,803 to 4,246,961
_RS19600
DZA65_RS22990: DZA65_RS22990 - hypothetical protein, at 4,247,138 to 4,247,425
_RS22990
DZA65_RS19610: DZA65_RS19610 - methionine adenosyltransferase, at 4,247,613 to 4,248,767
_RS19610
DZA65_RS19615: DZA65_RS19615 - SprT family zinc-dependent metalloprotease, at 4,248,878 to 4,249,390
_RS19615
DZA65_RS19620: DZA65_RS19620 - deoxyribonuclease I, at 4,249,490 to 4,250,188
_RS19620
Position (kb) 4247
4248
4249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4246.616 kb on + strand at 4246.616 kb on + strand at 4246.617 kb on - strand at 4246.666 kb on - strand at 4246.666 kb on - strand at 4246.666 kb on - strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.693 kb on + strand at 4246.694 kb on - strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.736 kb on + strand at 4246.785 kb on + strand at 4246.798 kb on + strand at 4246.799 kb on - strand at 4246.842 kb on - strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.938 kb on - strand, within DZA65_RS19600 at 4246.938 kb on - strand, within DZA65_RS19600 at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.949 kb on + strand at 4246.949 kb on + strand at 4246.949 kb on + strand at 4246.950 kb on - strand at 4246.950 kb on - strand at 4246.954 kb on + strand at 4246.954 kb on + strand at 4246.955 kb on - strand at 4247.194 kb on + strand, within DZA65_RS22990 at 4247.194 kb on + strand, within DZA65_RS22990 at 4247.195 kb on - strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.395 kb on - strand, within DZA65_RS22990 at 4247.396 kb on + strand, within DZA65_RS22990 at 4247.396 kb on + strand, within DZA65_RS22990 at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.400 kb on + strand at 4247.401 kb on - strand at 4247.401 kb on - strand at 4247.401 kb on - strand at 4247.442 kb on + strand at 4247.443 kb on - strand at 4247.443 kb on - strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.488 kb on - strand at 4247.488 kb on - strand at 4247.492 kb on + strand at 4247.492 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.495 kb on - strand at 4247.515 kb on + strand at 4247.515 kb on + strand at 4247.590 kb on + strand at 4247.590 kb on + strand at 4247.590 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.597 kb on + strand at 4247.597 kb on + strand at 4248.818 kb on + strand at 4248.818 kb on + strand at 4248.818 kb on + strand at 4248.819 kb on - strand at 4248.819 kb on - strand at 4248.866 kb on + strand at 4248.867 kb on - strand at 4248.867 kb on - strand at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.091 kb on - strand, within DZA65_RS19615 at 4249.131 kb on + strand at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.134 kb on - strand, within DZA65_RS19615 at 4249.262 kb on + strand, within DZA65_RS19615 at 4249.388 kb on + strand at 4249.389 kb on - strand at 4249.451 kb on + strand at 4249.451 kb on + strand at 4249.451 kb on + strand at 4249.452 kb on - strand at 4249.452 kb on - strand at 4249.489 kb on + strand at 4249.489 kb on + strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.522 kb on - strand at 4249.522 kb on - strand at 4249.522 kb on - strand at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.628 kb on + strand at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.639 kb on + strand, within DZA65_RS19620 at 4249.639 kb on + strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.703 kb on - strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 4,246,616 + +0.8 4,246,616 + +2.3 4,246,617 - +0.5 4,246,666 - -0.9 4,246,666 - +0.1 4,246,666 - +0.3 4,246,668 + +2.1 4,246,668 + +0.7 4,246,668 + -0.9 4,246,668 + +1.6 4,246,668 + -1.3 4,246,668 + +1.1 4,246,668 + +1.4 4,246,668 + +0.1 4,246,669 - +1.1 4,246,669 - -1.3 4,246,669 - +1.1 4,246,669 - -0.3 4,246,669 - -0.3 4,246,669 - -1.5 4,246,669 - +1.5 4,246,669 - +3.1 4,246,669 - -1.8 4,246,669 - +0.7 4,246,669 - +0.3 4,246,669 - -0.8 4,246,669 - -1.3 4,246,669 - -1.9 4,246,693 + -2.9 4,246,694 - +2.2 4,246,695 + +0.1 4,246,695 + +1.5 4,246,695 + -0.5 4,246,695 + +1.1 4,246,696 - -1.9 4,246,696 - -1.8 4,246,696 - +2.1 4,246,696 - -0.9 4,246,696 - -2.3 4,246,696 - +2.1 4,246,696 - +0.7 4,246,696 - +0.1 4,246,696 - +0.3 4,246,736 + -1.3 4,246,785 + +0.5 4,246,798 + -1.3 4,246,799 - -2.4 4,246,842 - DZA65_RS19600 0.25 -0.1 4,246,921 + DZA65_RS19600 0.74 +2.5 4,246,921 + DZA65_RS19600 0.74 +1.8 4,246,921 + DZA65_RS19600 0.74 +1.7 4,246,922 - DZA65_RS19600 0.75 -0.3 4,246,922 - DZA65_RS19600 0.75 -0.8 4,246,922 - DZA65_RS19600 0.75 -2.8 4,246,922 - DZA65_RS19600 0.75 -1.3 4,246,922 - DZA65_RS19600 0.75 -0.8 4,246,924 + DZA65_RS19600 0.76 +1.2 4,246,924 + DZA65_RS19600 0.76 +0.1 4,246,924 + DZA65_RS19600 0.76 +2.5 4,246,924 + DZA65_RS19600 0.76 +0.5 4,246,924 + DZA65_RS19600 0.76 +0.2 4,246,924 + DZA65_RS19600 0.76 -1.8 4,246,924 + DZA65_RS19600 0.76 +3.6 4,246,924 + DZA65_RS19600 0.76 +1.1 4,246,925 - DZA65_RS19600 0.77 +0.1 4,246,925 - DZA65_RS19600 0.77 +0.1 4,246,925 - DZA65_RS19600 0.77 +0.3 4,246,925 - DZA65_RS19600 0.77 +0.4 4,246,925 - DZA65_RS19600 0.77 +0.3 4,246,925 - DZA65_RS19600 0.77 +1.4 4,246,925 - DZA65_RS19600 0.77 -0.9 4,246,925 - DZA65_RS19600 0.77 -0.3 4,246,925 - DZA65_RS19600 0.77 -1.5 4,246,925 - DZA65_RS19600 0.77 +0.5 4,246,925 - DZA65_RS19600 0.77 -0.8 4,246,925 - DZA65_RS19600 0.77 -0.4 4,246,937 + DZA65_RS19600 0.84 +1.3 4,246,937 + DZA65_RS19600 0.84 -2.4 4,246,937 + DZA65_RS19600 0.84 +0.1 4,246,938 - DZA65_RS19600 0.85 -1.5 4,246,938 - DZA65_RS19600 0.85 +0.3 4,246,946 + +0.9 4,246,946 + -0.5 4,246,946 + -1.2 4,246,946 + +0.5 4,246,946 + -0.9 4,246,946 + -0.3 4,246,946 + +1.3 4,246,946 + -0.7 4,246,947 - +0.1 4,246,947 - +0.1 4,246,947 - -0.1 4,246,947 - +2.6 4,246,947 - +1.1 4,246,947 - +0.2 4,246,947 - -0.2 4,246,947 - +0.5 4,246,947 - -0.9 4,246,949 + +1.5 4,246,949 + -0.5 4,246,949 + +0.1 4,246,950 - +1.5 4,246,950 - +0.5 4,246,954 + -0.9 4,246,954 + -1.8 4,246,955 - +0.7 4,247,194 + DZA65_RS22990 0.19 -0.5 4,247,194 + DZA65_RS22990 0.19 -1.5 4,247,195 - DZA65_RS22990 0.20 +0.6 4,247,200 + DZA65_RS22990 0.22 -0.3 4,247,200 + DZA65_RS22990 0.22 -0.5 4,247,200 + DZA65_RS22990 0.22 -1.8 4,247,201 - DZA65_RS22990 0.22 +0.3 4,247,201 - DZA65_RS22990 0.22 -1.5 4,247,201 - DZA65_RS22990 0.22 -0.6 4,247,201 - DZA65_RS22990 0.22 -1.3 4,247,395 - DZA65_RS22990 0.89 -2.3 4,247,396 + DZA65_RS22990 0.90 -1.9 4,247,396 + DZA65_RS22990 0.90 -1.3 4,247,397 - +1.1 4,247,397 - +1.6 4,247,397 - -0.8 4,247,397 - +0.8 4,247,397 - +0.5 4,247,397 - -3.5 4,247,397 - -1.8 4,247,397 - -0.5 4,247,400 + -0.5 4,247,401 - +0.5 4,247,401 - +0.9 4,247,401 - +0.7 4,247,442 + -1.5 4,247,443 - -2.3 4,247,443 - -0.5 4,247,487 + +1.6 4,247,487 + -0.9 4,247,487 + +3.2 4,247,487 + +1.1 4,247,488 - -0.9 4,247,488 - +0.9 4,247,492 + -1.5 4,247,492 + -0.4 4,247,494 + -0.1 4,247,494 + -0.3 4,247,494 + +1.1 4,247,494 + -0.1 4,247,495 - +0.5 4,247,515 + +0.1 4,247,515 + -0.1 4,247,590 + +0.2 4,247,590 + +1.3 4,247,590 + +1.6 4,247,595 + +0.5 4,247,595 + -1.3 4,247,595 + +0.1 4,247,595 + +0.1 4,247,595 + -1.3 4,247,595 + -1.1 4,247,597 + -0.5 4,247,597 + +1.1 4,248,818 + +2.5 4,248,818 + -0.5 4,248,818 + -0.6 4,248,819 - -2.4 4,248,819 - -0.7 4,248,866 + +0.1 4,248,867 - +1.3 4,248,867 - +1.6 4,248,995 + DZA65_RS19615 0.23 +0.1 4,248,995 + DZA65_RS19615 0.23 -0.3 4,248,995 + DZA65_RS19615 0.23 -3.6 4,248,995 + DZA65_RS19615 0.23 +0.2 4,248,995 + DZA65_RS19615 0.23 +0.9 4,248,995 + DZA65_RS19615 0.23 +0.7 4,248,995 + DZA65_RS19615 0.23 -1.1 4,248,995 + DZA65_RS19615 0.23 +2.6 4,248,995 + DZA65_RS19615 0.23 -1.5 4,248,996 - DZA65_RS19615 0.23 +1.9 4,248,996 - DZA65_RS19615 0.23 -0.5 4,248,996 - DZA65_RS19615 0.23 +0.4 4,249,090 + DZA65_RS19615 0.41 +1.6 4,249,090 + DZA65_RS19615 0.41 +0.8 4,249,090 + DZA65_RS19615 0.41 -0.3 4,249,090 + DZA65_RS19615 0.41 +0.1 4,249,091 - DZA65_RS19615 0.42 +1.1 4,249,131 + +2.3 4,249,132 - DZA65_RS19615 0.50 +0.1 4,249,132 - DZA65_RS19615 0.50 +0.9 4,249,132 - DZA65_RS19615 0.50 -0.6 4,249,132 - DZA65_RS19615 0.50 +0.3 4,249,132 - DZA65_RS19615 0.50 +0.9 4,249,133 + DZA65_RS19615 0.50 +0.3 4,249,133 + DZA65_RS19615 0.50 -0.4 4,249,133 + DZA65_RS19615 0.50 +0.9 4,249,133 + DZA65_RS19615 0.50 -1.8 4,249,133 + DZA65_RS19615 0.50 +0.0 4,249,133 + DZA65_RS19615 0.50 +1.9 4,249,133 + DZA65_RS19615 0.50 +0.4 4,249,133 + DZA65_RS19615 0.50 +0.3 4,249,133 + DZA65_RS19615 0.50 +0.5 4,249,133 + DZA65_RS19615 0.50 -1.5 4,249,134 - DZA65_RS19615 0.50 +0.8 4,249,262 + DZA65_RS19615 0.75 +0.2 4,249,388 + +0.9 4,249,389 - -0.9 4,249,451 + +0.8 4,249,451 + -1.3 4,249,451 + -2.6 4,249,452 - -0.5 4,249,452 - +1.6 4,249,489 + +0.2 4,249,489 + +0.2 4,249,490 - -2.1 4,249,490 - -0.4 4,249,490 - -0.1 4,249,490 - +1.1 4,249,490 - +0.4 4,249,522 - -2.7 4,249,522 - -0.9 4,249,522 - +0.2 4,249,628 + DZA65_RS19620 0.20 +0.4 4,249,628 + DZA65_RS19620 0.20 +0.8 4,249,628 + -0.5 4,249,628 + DZA65_RS19620 0.20 -1.8 4,249,629 - DZA65_RS19620 0.20 +0.6 4,249,629 - DZA65_RS19620 0.20 -0.9 4,249,629 - DZA65_RS19620 0.20 -0.3 4,249,629 - DZA65_RS19620 0.20 +0.7 4,249,629 - DZA65_RS19620 0.20 -1.9 4,249,639 + DZA65_RS19620 0.21 -1.8 4,249,639 + DZA65_RS19620 0.21 -1.5 4,249,640 - DZA65_RS19620 0.21 -0.5 4,249,640 - DZA65_RS19620 0.21 +0.1 4,249,640 - DZA65_RS19620 0.21 -0.9 4,249,640 - DZA65_RS19620 0.21 -0.3 4,249,703 - DZA65_RS19620 0.30 -0.5 4,249,743 + DZA65_RS19620 0.36 +0.5 4,249,743 + DZA65_RS19620 0.36 -0.2 4,249,743 + DZA65_RS19620 0.36 +2.1 4,249,744 - DZA65_RS19620 0.36 -0.3 4,249,744 - DZA65_RS19620 0.36 -1.3 4,249,744 - DZA65_RS19620 0.36 -0.6 4,249,744 - DZA65_RS19620 0.36 -1.5 4,249,744 - DZA65_RS19620 0.36 +0.1 4,249,744 - DZA65_RS19620 0.36 -0.5
Or see this region's nucleotide sequence