Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18070

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,885,609	+		DZA65_RS18065	0.47	-0.7
3,885,609	+		DZA65_RS18065	0.47	-0.4
3,885,609	+		DZA65_RS18065	0.47	-1.1
3,885,610	-		DZA65_RS18065	0.47	-1.4
3,885,610	-		DZA65_RS18065	0.47	-1.7
3,885,610	-		DZA65_RS18065	0.47	-0.4
3,885,610	-		DZA65_RS18065	0.47	-0.1
3,885,610	-		DZA65_RS18065	0.47	+0.9
3,885,696	+		DZA65_RS18065	0.53	-0.7
3,885,697	-		DZA65_RS18065	0.53	-1.7
3,885,697	-		DZA65_RS18065	0.53	-3.8
3,885,804	+		DZA65_RS18065	0.61	-0.1
3,885,804	+		DZA65_RS18065	0.61	-0.6
3,885,805	-		DZA65_RS18065	0.61	-1.7
3,885,898	+		DZA65_RS18065	0.67	+1.9
3,885,905	-		DZA65_RS18065	0.68	-0.7
3,886,005	+		DZA65_RS18065	0.75	+1.1
3,886,005	+		DZA65_RS18065	0.75	+0.1
3,886,005	+		DZA65_RS18065	0.75	+0.1
3,886,005	+		DZA65_RS18065	0.75	-2.6
3,886,006	-		DZA65_RS18065	0.75	-0.1
3,886,006	-		DZA65_RS18065	0.75	-1.6
3,886,006	-		DZA65_RS18065	0.75	-1.4
3,886,006	-		DZA65_RS18065	0.75	+1.0
3,886,006	-		DZA65_RS18065	0.75	-0.1
3,886,006	-		DZA65_RS18065	0.75	+0.4
3,886,174	+		DZA65_RS18065	0.87	-0.7
3,886,174	+		DZA65_RS18065	0.87	-0.6
3,886,183	+		DZA65_RS18065	0.87	+4.1
3,886,183	+		DZA65_RS18065	0.87	-0.9
3,886,183	+		DZA65_RS18065	0.87	-1.4
3,886,184	-		DZA65_RS18065	0.87	-2.6
3,886,201	-		DZA65_RS18065	0.89	+1.2
3,886,201	-		DZA65_RS18065	0.89	-0.7
3,886,247	-				-0.9
3,886,311	+				+1.1
3,886,311	+				-1.9
3,886,311	+				+2.5
3,886,351	+				-0.9
3,886,351	+				-0.9
3,886,351	+				-0.0
3,886,354	+				-0.7
3,886,354	+				-1.1
3,886,355	-				-1.4
3,886,355	-				-1.4
3,886,355	-				-0.6
3,886,383	-				-0.9
3,886,542	+		DZA65_RS18070	0.18	-0.7
3,886,658	+		DZA65_RS18070	0.31	-0.2
3,886,658	+		DZA65_RS18070	0.31	-2.6
3,886,658	+		DZA65_RS18070	0.31	-0.6
3,886,659	-		DZA65_RS18070	0.31	+0.9
3,886,659	-		DZA65_RS18070	0.31	-1.7
3,886,688	+		DZA65_RS18070	0.34	+0.5
3,886,688	+		DZA65_RS18070	0.34	-0.1
3,886,688	+		DZA65_RS18070	0.34	-0.4
3,886,688	+		DZA65_RS18070	0.34	-0.7
3,886,688	+		DZA65_RS18070	0.34	-0.9
3,886,689	-		DZA65_RS18070	0.35	-1.3
3,886,689	-		DZA65_RS18070	0.35	-0.1
3,886,689	-		DZA65_RS18070	0.35	-0.3
3,886,689	-		DZA65_RS18070	0.35	-0.8
3,886,694	+		DZA65_RS18070	0.35	-1.1
3,886,694	+		DZA65_RS18070	0.35	-0.7
3,886,694	+				-1.3
3,886,694	+		DZA65_RS18070	0.35	-1.1
3,886,694	+		DZA65_RS18070	0.35	+0.1
3,886,694	+		DZA65_RS18070	0.35	-1.0
3,886,695	-		DZA65_RS18070	0.35	-0.6
3,886,695	-		DZA65_RS18070	0.35	-0.4
3,886,695	-		DZA65_RS18070	0.35	+1.2
3,886,770	+		DZA65_RS18070	0.43	+1.3
3,886,772	+		DZA65_RS18070	0.44	-1.4
3,886,772	+		DZA65_RS18070	0.44	-1.1
3,886,772	+		DZA65_RS18070	0.44	+1.1
3,886,772	+		DZA65_RS18070	0.44	-0.7
3,886,772	+		DZA65_RS18070	0.44	-0.7
3,886,772	+				-0.1
3,886,772	+		DZA65_RS18070	0.44	-1.9
3,886,773	-		DZA65_RS18070	0.44	+0.3
3,886,773	-		DZA65_RS18070	0.44	+0.3
3,886,773	-		DZA65_RS18070	0.44	+0.9
3,886,773	-		DZA65_RS18070	0.44	-3.4
3,886,773	-		DZA65_RS18070	0.44	-0.3
3,886,838	+		DZA65_RS18070	0.51	-0.6
3,886,839	-		DZA65_RS18070	0.51	-1.6
3,886,839	-		DZA65_RS18070	0.51	+0.8
3,886,839	-		DZA65_RS18070	0.51	-1.1
3,886,842	+		DZA65_RS18070	0.51	-0.7
3,886,842	+		DZA65_RS18070	0.51	-0.6
3,886,842	+		DZA65_RS18070	0.51	+0.9
3,886,842	+		DZA65_RS18070	0.51	+2.9
3,886,842	+		DZA65_RS18070	0.51	+1.6
3,886,842	+		DZA65_RS18070	0.51	-2.4
3,886,842	+		DZA65_RS18070	0.51	+0.6
3,886,842	+		DZA65_RS18070	0.51	-2.3
3,886,842	+		DZA65_RS18070	0.51	-2.1
3,886,843	-		DZA65_RS18070	0.51	-0.5
3,886,843	-		DZA65_RS18070	0.51	-0.7
3,886,843	-		DZA65_RS18070	0.51	+1.7
3,886,843	-		DZA65_RS18070	0.51	+0.9
3,886,843	-		DZA65_RS18070	0.51	-1.1
3,886,843	-		DZA65_RS18070	0.51	+0.5
3,886,843	-		DZA65_RS18070	0.51	+0.0
3,886,843	-		DZA65_RS18070	0.51	+0.1
3,886,907	+		DZA65_RS18070	0.59	+0.4
3,886,907	+		DZA65_RS18070	0.59	-2.6
3,886,907	+		DZA65_RS18070	0.59	+0.3
3,886,908	-		DZA65_RS18070	0.59	+0.1
3,886,908	-		DZA65_RS18070	0.59	-1.1
3,886,908	-		DZA65_RS18070	0.59	-1.1
3,886,908	-		DZA65_RS18070	0.59	-2.3
3,886,954	-		DZA65_RS18070	0.64	+0.4
3,887,036	+		DZA65_RS18070	0.73	+0.3
3,887,067	-		DZA65_RS18070	0.76	+1.2
3,887,183	+		DZA65_RS18070	0.89	-0.2
3,887,183	+		DZA65_RS18070	0.89	+0.6
3,887,183	+		DZA65_RS18070	0.89	-1.9
3,887,184	-		DZA65_RS18070	0.89	-1.4
3,887,184	-		DZA65_RS18070	0.89	+0.9
3,887,184	-		DZA65_RS18070	0.89	-3.4
3,887,202	+				-0.0
3,887,229	+				+1.5
3,887,229	+				+1.9
3,887,230	-				+0.3
3,887,230	-				+0.1
3,887,230	-				-1.1
3,887,235	+				+0.1
3,887,235	+				-0.4
3,887,235	+				-0.8
3,887,235	+				-1.1
3,887,236	-				-1.4
3,887,236	-				-1.9
3,887,236	-				-1.1
3,887,236	-				-1.4
3,887,236	-				-0.4
3,887,236	-				-2.3
3,887,258	-				-1.1
3,887,284	-				-0.7
3,887,289	+				+0.3
3,887,295	+				+1.7
3,887,384	+				-2.1
3,887,384	+				+0.7
3,887,385	-				-2.9
3,887,385	-				-3.1
3,887,574	+		DZA65_RS18075	0.20	-0.9
3,887,574	+		DZA65_RS18075	0.20	-2.1
3,887,574	+		DZA65_RS18075	0.20	-1.7
3,887,574	+		DZA65_RS18075	0.20	+0.6
3,887,575	-		DZA65_RS18075	0.20	-0.7
3,887,575	-		DZA65_RS18075	0.20	-1.4
3,887,575	-		DZA65_RS18075	0.20	+1.9
3,887,575	-		DZA65_RS18075	0.20	+0.9
3,887,575	-		DZA65_RS18075	0.20	-1.4
3,887,575	-		DZA65_RS18075	0.20	-0.7
3,887,575	-		DZA65_RS18075	0.20	-0.1
3,887,575	-		DZA65_RS18075	0.20	-0.3
3,887,575	-		DZA65_RS18075	0.20	+1.3
3,887,575	-		DZA65_RS18075	0.20	-1.7
3,887,575	-		DZA65_RS18075	0.20	-0.4
3,887,575	-		DZA65_RS18075	0.20	-1.7
3,887,657	+		DZA65_RS18075	0.26	-1.6
3,887,703	+		DZA65_RS18075	0.29	+1.5
3,887,704	-		DZA65_RS18075	0.29	+1.2
3,887,704	-		DZA65_RS18075	0.29	-2.5
3,887,911	+		DZA65_RS18075	0.43	-0.2
3,887,911	+		DZA65_RS18075	0.43	-0.4
3,887,954	+		DZA65_RS18075	0.46	-1.9
3,887,955	-		DZA65_RS18075	0.46	-0.1
3,887,979	+		DZA65_RS18075	0.48	+0.4
3,887,980	-		DZA65_RS18075	0.48	-0.5
3,887,980	-		DZA65_RS18075	0.48	+0.9
3,888,005	+		DZA65_RS18075	0.50	-1.0
3,888,005	+		DZA65_RS18075	0.50	+2.1
3,888,005	+		DZA65_RS18075	0.50	+0.3
3,888,005	+		DZA65_RS18075	0.50	+0.3
3,888,005	+		DZA65_RS18075	0.50	+1.1
3,888,005	+		DZA65_RS18075	0.50	-0.6
3,888,006	-		DZA65_RS18075	0.50	-0.1
3,888,006	-		DZA65_RS18075	0.50	-0.5
3,888,006	-		DZA65_RS18075	0.50	-1.1
3,888,006	-		DZA65_RS18075	0.50	-0.1
3,888,006	-		DZA65_RS18075	0.50	-0.9
3,888,172	+		DZA65_RS18075	0.62	+1.3
3,888,172	+		DZA65_RS18075	0.62	-1.9
3,888,173	-		DZA65_RS18075	0.62	-0.7