Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14465

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,151,145	-		DZA65_RS14460	0.49	+0.1
3,151,145	-		DZA65_RS14460	0.49	+0.2
3,151,172	+		DZA65_RS14460	0.50	-2.7
3,151,172	+		DZA65_RS14460	0.50	+0.1
3,151,173	-		DZA65_RS14460	0.50	-1.0
3,151,175	-		DZA65_RS14460	0.51	+0.3
3,151,184	+		DZA65_RS14460	0.51	+1.7
3,151,185	-		DZA65_RS14460	0.51	-1.7
3,151,185	-		DZA65_RS14460	0.51	-0.4
3,151,185	-		DZA65_RS14460	0.51	+0.9
3,151,185	-		DZA65_RS14460	0.51	+2.3
3,151,205	-		DZA65_RS14460	0.52	+0.0
3,151,209	+		DZA65_RS14460	0.52	+0.4
3,151,209	+		DZA65_RS14460	0.52	-2.3
3,151,209	+		DZA65_RS14460	0.52	-0.3
3,151,209	+		DZA65_RS14460	0.52	+0.5
3,151,210	-		DZA65_RS14460	0.52	-0.3
3,151,210	-		DZA65_RS14460	0.52	+0.4
3,151,210	-		DZA65_RS14460	0.52	-0.1
3,151,285	+		DZA65_RS14460	0.56	+0.3
3,151,286	-		DZA65_RS14460	0.56	+1.7
3,151,290	+		DZA65_RS14460	0.57	-0.3
3,151,291	-				+1.8
3,151,313	+		DZA65_RS14460	0.58	+0.8
3,151,314	-		DZA65_RS14460	0.58	+0.3
3,151,314	-		DZA65_RS14460	0.58	-2.1
3,151,314	-		DZA65_RS14460	0.58	+0.5
3,151,314	-		DZA65_RS14460	0.58	-0.9
3,151,314	-		DZA65_RS14460	0.58	+0.1
3,151,432	+		DZA65_RS14460	0.64	+0.6
3,151,432	+		DZA65_RS14460	0.64	-1.7
3,151,433	-		DZA65_RS14460	0.64	+1.1
3,151,433	-		DZA65_RS14460	0.64	+0.3
3,151,433	-		DZA65_RS14460	0.64	-0.5
3,151,433	-		DZA65_RS14460	0.64	+1.9
3,151,436	+		DZA65_RS14460	0.64	+1.2
3,151,436	+		DZA65_RS14460	0.64	-1.3
3,151,437	-		DZA65_RS14460	0.65	-3.1
3,151,437	-		DZA65_RS14460	0.65	+0.1
3,151,454	+		DZA65_RS14460	0.65	-0.6
3,151,454	+		DZA65_RS14460	0.65	-1.1
3,151,455	-		DZA65_RS14460	0.65	+0.5
3,151,461	+		DZA65_RS14460	0.66	+0.1
3,151,462	-		DZA65_RS14460	0.66	-0.3
3,151,462	-		DZA65_RS14460	0.66	+0.0
3,151,516	+		DZA65_RS14460	0.69	+2.1
3,151,516	+		DZA65_RS14460	0.69	+0.7
3,151,516	+		DZA65_RS14460	0.69	-2.1
3,151,516	+		DZA65_RS14460	0.69	+1.4
3,151,516	+		DZA65_RS14460	0.69	+0.5
3,151,517	-		DZA65_RS14460	0.69	+0.5
3,151,517	-		DZA65_RS14460	0.69	+0.7
3,151,517	-		DZA65_RS14460	0.69	+0.7
3,151,520	-		DZA65_RS14460	0.69	+0.1
3,151,520	-		DZA65_RS14460	0.69	+0.0
3,151,535	-		DZA65_RS14460	0.70	-0.4
3,151,623	-		DZA65_RS14460	0.74	-0.3
3,151,675	+				+1.0
3,151,675	+		DZA65_RS14460	0.77	+1.2
3,151,675	+		DZA65_RS14460	0.77	-0.9
3,151,677	+		DZA65_RS14460	0.77	+0.9
3,151,677	+		DZA65_RS14460	0.77	-2.5
3,151,677	+		DZA65_RS14460	0.77	-1.3
3,151,677	+		DZA65_RS14460	0.77	-1.3
3,151,677	+		DZA65_RS14460	0.77	+0.2
3,151,677	+		DZA65_RS14460	0.77	+1.8
3,151,677	+		DZA65_RS14460	0.77	-1.3
3,151,677	+		DZA65_RS14460	0.77	+0.7
3,151,677	+		DZA65_RS14460	0.77	+1.4
3,151,678	-		DZA65_RS14460	0.77	-0.7
3,151,678	-		DZA65_RS14460	0.77	+1.0
3,151,678	-		DZA65_RS14460	0.77	-1.9
3,151,678	-		DZA65_RS14460	0.77	-0.3
3,151,678	-		DZA65_RS14460	0.77	+0.1
3,151,678	-		DZA65_RS14460	0.77	-0.6
3,151,678	-		DZA65_RS14460	0.77	+1.0
3,151,678	-		DZA65_RS14460	0.77	-2.1
3,151,681	-		DZA65_RS14460	0.78	-0.1
3,151,681	-		DZA65_RS14460	0.78	+1.5
3,151,681	-		DZA65_RS14460	0.78	-0.3
3,151,732	+		DZA65_RS14460	0.80	+2.1
3,151,786	+		DZA65_RS14460	0.83	-0.4
3,151,786	+		DZA65_RS14460	0.83	+0.7
3,151,786	+		DZA65_RS14460	0.83	-0.6
3,151,786	+		DZA65_RS14460	0.83	-0.7
3,151,787	-		DZA65_RS14460	0.83	+1.4
3,151,787	-		DZA65_RS14460	0.83	+1.4
3,151,787	-		DZA65_RS14460	0.83	-0.3
3,151,787	-		DZA65_RS14460	0.83	+0.9
3,151,787	-		DZA65_RS14460	0.83	+1.0
3,151,787	-		DZA65_RS14460	0.83	-1.3
3,151,787	-		DZA65_RS14460	0.83	+0.3
3,151,935	+				-1.9
3,151,935	+				-2.1
3,151,935	+				-0.9
3,151,935	+				-0.9
3,151,936	-				-0.7
3,151,936	-				+0.1
3,151,955	-				-2.3
3,152,055	+				-1.1
3,152,056	-				+0.4
3,152,056	-				-1.5
3,152,056	-				-0.2
3,152,056	-				+2.4
3,152,056	-				-0.9
3,152,056	-				+2.0
3,152,059	+				-2.1
3,152,059	+				-0.6
3,152,059	+				-0.2
3,152,059	+				-2.7
3,152,100	-				-0.7
3,152,196	+		DZA65_RS14465	0.11	-0.9
3,152,196	+		DZA65_RS14465	0.11	+0.7
3,152,196	+		DZA65_RS14465	0.11	-0.7
3,152,196	+		DZA65_RS14465	0.11	+0.3
3,152,196	+		DZA65_RS14465	0.11	+0.2
3,152,196	+		DZA65_RS14465	0.11	-0.9
3,152,196	+		DZA65_RS14465	0.11	-0.3
3,152,197	-		DZA65_RS14465	0.11	+0.1
3,152,197	-		DZA65_RS14465	0.11	+1.4
3,152,197	-		DZA65_RS14465	0.11	-1.1
3,152,197	-		DZA65_RS14465	0.11	-1.3
3,152,208	-		DZA65_RS14465	0.13	-0.2
3,152,208	-		DZA65_RS14465	0.13	+1.1
3,152,208	-		DZA65_RS14465	0.13	+1.4
3,152,244	-		DZA65_RS14465	0.18	-1.9
3,152,244	-		DZA65_RS14465	0.18	+0.3
3,152,244	-		DZA65_RS14465	0.18	-0.1
3,152,252	-		DZA65_RS14465	0.19	-0.8
3,152,252	-		DZA65_RS14465	0.19	+1.4
3,152,253	+		DZA65_RS14465	0.19	-0.7
3,152,253	+		DZA65_RS14465	0.19	+0.4
3,152,254	-		DZA65_RS14465	0.19	-1.9
3,152,254	-		DZA65_RS14465	0.19	-0.2
3,152,254	-		DZA65_RS14465	0.19	-0.3
3,152,287	+		DZA65_RS14465	0.23	+2.4
3,152,288	-		DZA65_RS14465	0.24	-0.1
3,152,288	-		DZA65_RS14465	0.24	+1.2
3,152,288	-		DZA65_RS14465	0.24	-1.9
3,152,288	-		DZA65_RS14465	0.24	+0.0
3,152,290	+		DZA65_RS14465	0.24	-1.9
3,152,290	+				-2.3
3,152,290	+		DZA65_RS14465	0.24	-0.3
3,152,291	-		DZA65_RS14465	0.24	-0.1
3,152,291	-		DZA65_RS14465	0.24	+0.1
3,152,291	-		DZA65_RS14465	0.24	+1.0
3,152,291	-		DZA65_RS14465	0.24	+0.3
3,152,291	-		DZA65_RS14465	0.24	+2.5
3,152,291	-		DZA65_RS14465	0.24	+2.0
3,152,291	-		DZA65_RS14465	0.24	-0.1
3,152,294	+		DZA65_RS14465	0.24	+1.2
3,152,294	+		DZA65_RS14465	0.24	-2.5
3,152,294	+		DZA65_RS14465	0.24	-0.2
3,152,294	+		DZA65_RS14465	0.24	-2.3
3,152,294	+		DZA65_RS14465	0.24	+1.4
3,152,294	+		DZA65_RS14465	0.24	-0.3
3,152,294	+		DZA65_RS14465	0.24	+0.2
3,152,294	+		DZA65_RS14465	0.24	+0.3
3,152,294	+		DZA65_RS14465	0.24	+0.7
3,152,294	+		DZA65_RS14465	0.24	+1.0
3,152,294	+		DZA65_RS14465	0.24	-2.3
3,152,294	+		DZA65_RS14465	0.24	+1.1
3,152,294	+		DZA65_RS14465	0.24	-1.3
3,152,294	+		DZA65_RS14465	0.24	+1.1
3,152,295	-		DZA65_RS14465	0.24	+0.6
3,152,295	-		DZA65_RS14465	0.24	-1.7
3,152,295	-		DZA65_RS14465	0.24	+1.3
3,152,295	-		DZA65_RS14465	0.24	-0.7
3,152,295	-		DZA65_RS14465	0.24	-1.2
3,152,295	-		DZA65_RS14465	0.24	-0.9
3,152,295	-		DZA65_RS14465	0.24	+1.0
3,152,295	-		DZA65_RS14465	0.24	+1.7
3,152,295	-		DZA65_RS14465	0.24	+0.6
3,152,295	-		DZA65_RS14465	0.24	-0.6
3,152,295	-		DZA65_RS14465	0.24	+0.2
3,152,295	-		DZA65_RS14465	0.24	-0.1
3,152,295	-		DZA65_RS14465	0.24	+1.1
3,152,295	-		DZA65_RS14465	0.24	-2.0
3,152,295	-		DZA65_RS14465	0.24	+1.4
3,152,447	+		DZA65_RS14465	0.45	-0.7
3,152,562	-		DZA65_RS14465	0.60	+0.5
3,152,679	+		DZA65_RS14465	0.76	+0.1
3,152,688	+		DZA65_RS14465	0.77	+0.2
3,152,688	+		DZA65_RS14465	0.77	-1.3
3,152,689	-		DZA65_RS14465	0.77	+1.3
3,152,689	-		DZA65_RS14465	0.77	-0.3
3,152,689	-		DZA65_RS14465	0.77	-1.1
3,152,753	+		DZA65_RS14465	0.86	+1.6
3,152,811	+				-1.1
3,152,811	+				+3.0
3,152,812	-				-0.3
3,152,812	-				+1.0
3,152,812	-				-1.3
3,152,812	-				+0.3
3,152,842	+				-0.3
3,152,843	-				+0.4
3,152,854	+				+2.3
3,152,854	+				+0.1
3,152,854	+				+0.7
3,152,855	-				-0.3
3,152,855	-				-2.5
3,152,855	-				+0.3
3,152,855	-				-1.9
3,152,855	-				-1.5
3,152,856	+				+0.4
3,152,856	+				-0.4
3,152,856	+				+1.3
3,152,856	+				+0.7
3,152,856	+				-2.6
3,152,856	+				+0.5
3,152,856	+				-3.0
3,152,856	+				+0.7
3,152,856	+				+0.2
3,152,856	+				-1.3
3,152,856	+				+1.7
3,152,856	+				+0.4
3,152,856	+				+1.0
3,152,857	-				-0.3
3,152,857	-				-0.8
3,152,857	-				+0.3
3,152,857	-				-2.1
3,152,857	-				-1.8
3,152,857	-				+1.4
3,152,857	-				-1.2
3,152,857	-				+1.1
3,152,857	-				+0.6
3,152,857	-				-0.9
3,152,868	-				-0.9
3,152,874	+				+0.0
3,152,874	+				+0.3
3,152,874	+				+1.0
3,152,874	+				+2.8
3,152,874	+				+0.4
3,152,874	+				-0.3
3,152,875	-				+0.1
3,152,875	-				+0.2
3,152,875	-				+0.2
3,152,875	-				+0.5
3,152,875	-				-0.3
3,152,875	-				+1.0
3,152,875	-				-0.3
3,152,875	-				-1.1
3,152,875	-				-3.0
3,152,875	-				+0.5
3,152,875	-				-1.3
3,152,875	-				-2.0
3,152,875	-				+1.0
3,152,891	+				+0.0
3,152,931	+				-1.9
3,152,932	-				-0.1
3,152,932	-				-0.6
3,152,997	+		DZA65_RS14470	0.11	+0.7
3,152,997	+		DZA65_RS14470	0.11	-0.1
3,153,060	+		DZA65_RS14470	0.33	+0.7
3,153,061	-		DZA65_RS14470	0.33	+0.4
3,153,075	+		DZA65_RS14470	0.38	-0.5
3,153,129	+		DZA65_RS14470	0.57	-2.1
3,153,129	+		DZA65_RS14470	0.57	-1.7
3,153,129	+		DZA65_RS14470	0.57	-0.5
3,153,129	+		DZA65_RS14470	0.57	-2.3
3,153,129	+		DZA65_RS14470	0.57	-0.1
3,153,130	-		DZA65_RS14470	0.57	+2.5
3,153,130	-		DZA65_RS14470	0.57	+0.7
3,153,130	-		DZA65_RS14470	0.57	+0.7
3,153,130	-		DZA65_RS14470	0.57	+1.7
3,153,160	+		DZA65_RS14470	0.67	+0.7
3,153,200	-		DZA65_RS14470	0.81	-0.5
3,153,216	+		DZA65_RS14470	0.87	-2.5
3,153,216	+		DZA65_RS14470	0.87	-0.7
3,153,216	+		DZA65_RS14470	0.87	+0.2
3,153,217	-		DZA65_RS14470	0.87	-1.0
3,153,231	+				+0.6
3,153,231	+				-0.3
3,153,231	+				-2.5
3,153,232	-				+2.0
3,153,232	-				-0.0
3,153,242	-				+2.2
3,153,251	+				-0.3
3,153,251	+				+0.4
3,153,251	+				-1.9
3,153,252	-				+0.2
3,153,252	-				-1.3
3,153,252	-				+0.8
3,153,287	+				-0.9
3,153,288	-				-0.7
3,153,288	-				-1.9
3,153,288	-				+0.8
3,153,297	+				+2.8
3,153,352	+				+0.4
3,153,367	+				+2.3
3,153,374	+				+1.7
3,153,426	+				+0.1
3,153,427	-				-0.9
3,153,427	-				+1.1
3,153,479	+				-0.6
3,153,480	-				-0.0
3,153,519	+		DZA65_RS14475	0.11	-0.9
3,153,519	+		DZA65_RS14475	0.11	-0.6
3,153,520	-		DZA65_RS14475	0.11	+1.3
3,153,520	-		DZA65_RS14475	0.11	-0.3
3,153,520	-				+1.7
3,153,521	+		DZA65_RS14475	0.11	+1.4
3,153,521	+		DZA65_RS14475	0.11	+0.7
3,153,521	+		DZA65_RS14475	0.11	+0.7
3,153,521	+		DZA65_RS14475	0.11	-2.7
3,153,521	+		DZA65_RS14475	0.11	+1.4
3,153,522	-		DZA65_RS14475	0.11	+1.2
3,153,522	-		DZA65_RS14475	0.11	-2.1
3,153,608	+		DZA65_RS14475	0.20	+1.3
3,153,608	+		DZA65_RS14475	0.20	-1.3
3,153,616	-		DZA65_RS14475	0.21	-0.1
3,153,698	+		DZA65_RS14475	0.30	-1.3
3,153,698	+		DZA65_RS14475	0.30	-1.3
3,153,698	+		DZA65_RS14475	0.30	+0.1
3,153,801	+		DZA65_RS14475	0.41	+0.7
3,153,801	+		DZA65_RS14475	0.41	+0.4
3,153,801	+		DZA65_RS14475	0.41	+0.4
3,153,801	+		DZA65_RS14475	0.41	-1.8
3,153,801	+		DZA65_RS14475	0.41	-1.0
3,153,802	-		DZA65_RS14475	0.41	+1.8
3,153,804	+		DZA65_RS14475	0.41	+0.4
3,153,804	+		DZA65_RS14475	0.41	-0.1
3,153,804	+		DZA65_RS14475	0.41	-0.3
3,153,804	+		DZA65_RS14475	0.41	-0.1
3,153,804	+		DZA65_RS14475	0.41	+0.5
3,153,805	-		DZA65_RS14475	0.41	+1.7
3,153,805	-		DZA65_RS14475	0.41	-0.7
3,153,805	-		DZA65_RS14475	0.41	+1.0
3,153,805	-		DZA65_RS14475	0.41	+2.0
3,153,805	-		DZA65_RS14475	0.41	+1.7
3,153,808	-		DZA65_RS14475	0.41	-2.5