Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13885

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,983,134	+		DZA65_RS13875	0.68	-1.3
2,983,134	+		DZA65_RS13875	0.68	-1.1
2,983,135	-		DZA65_RS13875	0.68	-2.5
2,983,135	-		DZA65_RS13875	0.68	-1.9
2,983,135	-		DZA65_RS13875	0.68	-2.3
2,983,137	+		DZA65_RS13875	0.68	-1.9
2,983,138	-		DZA65_RS13875	0.68	-2.5
2,983,138	-		DZA65_RS13875	0.68	-3.5
2,983,160	+		DZA65_RS13875	0.70	-3.0
2,983,160	+		DZA65_RS13875	0.70	-1.6
2,983,181	+		DZA65_RS13875	0.71	-0.9
2,983,181	+		DZA65_RS13875	0.71	-1.0
2,983,181	+				-2.8
2,983,181	+		DZA65_RS13875	0.71	-0.3
2,983,181	+		DZA65_RS13875	0.71	-1.9
2,983,182	-		DZA65_RS13875	0.71	-2.6
2,983,182	-		DZA65_RS13875	0.71	-1.9
2,983,182	-		DZA65_RS13875	0.71	-3.2
2,983,189	-		DZA65_RS13875	0.72	-2.6
2,983,367	-		DZA65_RS13875	0.84	-3.8
2,983,367	-		DZA65_RS13875	0.84	-2.6
2,983,446	-		DZA65_RS13875	0.89	-0.3
2,983,485	+				-3.1
2,983,485	+				-2.3
2,983,486	-				-2.5
2,983,486	-				-1.3
2,983,512	+				-1.4
2,983,513	-				-2.3
2,983,513	-				-1.9
2,983,525	-				-2.3
2,983,558	+				-4.3
2,983,559	-				-4.8
2,983,559	-				+0.0
2,983,576	-				-0.9
2,983,578	+				-1.3
2,983,579	-				+0.2
2,983,579	-				-1.3
2,983,579	-				+0.5
2,983,597	+				-0.3
2,983,597	+				+0.9
2,983,597	+				+1.0
2,983,601	+				+0.7
2,983,615	+				-1.0
2,983,644	+				+0.3
2,983,656	+				-0.6
2,983,657	-				-2.6
2,983,657	-				+0.4
2,983,659	+				+0.1
2,983,660	-				-2.1
2,983,675	-				-0.9
2,983,707	+				+0.1
2,983,707	+				+0.5
2,983,707	+				-0.3
2,983,707	+				-2.1
2,983,708	-				-0.3
2,983,708	-				-0.9
2,983,708	-				-1.3
2,983,708	-				-2.5
2,983,710	-				-0.3
2,983,732	-				-1.9
2,983,791	-		DZA65_RS13880	0.21	-1.9
2,983,791	-		DZA65_RS13880	0.21	-2.3
2,983,821	-		DZA65_RS13880	0.28	-3.4
2,983,854	-		DZA65_RS13880	0.36	-0.3
2,983,854	-		DZA65_RS13880	0.36	-1.6
2,983,892	+		DZA65_RS13880	0.46	-0.3
2,983,892	+		DZA65_RS13880	0.46	-1.9
2,983,895	+		DZA65_RS13880	0.46	-1.3
2,983,902	-		DZA65_RS13880	0.48	-2.3
2,983,968	+		DZA65_RS13880	0.64	-2.8
2,983,975	-		DZA65_RS13880	0.66	-1.6
2,983,975	-		DZA65_RS13880	0.66	-3.8
2,983,975	-		DZA65_RS13880	0.66	-2.1
2,984,006	+		DZA65_RS13880	0.73	-1.3
2,984,029	+		DZA65_RS13880	0.79	-0.9
2,984,029	+		DZA65_RS13880	0.79	-1.6
2,984,030	-		DZA65_RS13880	0.79	-3.5
2,984,030	-		DZA65_RS13880	0.79	-1.9
2,984,030	-		DZA65_RS13880	0.79	-1.5
2,984,054	+		DZA65_RS13880	0.85	-1.3
2,984,055	-		DZA65_RS13880	0.85	-1.9
2,984,055	-		DZA65_RS13880	0.85	-0.3
2,984,113	-				-1.9
2,984,134	-				-0.9
2,984,137	+				-0.5
2,984,137	+				-0.6
2,984,138	-				-2.8
2,984,174	-		DZA65_RS13885	0.17	-0.3
2,984,226	+		DZA65_RS13885	0.31	-2.9
2,984,226	+		DZA65_RS13885	0.31	-3.2
2,984,226	+		DZA65_RS13885	0.31	-1.2
2,984,226	+		DZA65_RS13885	0.31	-1.9
2,984,227	-		DZA65_RS13885	0.31	-2.1
2,984,231	+		DZA65_RS13885	0.32	-1.1
2,984,231	+		DZA65_RS13885	0.32	-1.4
2,984,231	+		DZA65_RS13885	0.32	-2.9
2,984,231	+		DZA65_RS13885	0.32	-0.6
2,984,231	+		DZA65_RS13885	0.32	-1.3
2,984,232	-		DZA65_RS13885	0.33	-2.5
2,984,232	-		DZA65_RS13885	0.33	-1.3
2,984,299	-		DZA65_RS13885	0.51	+0.7
2,984,325	+		DZA65_RS13885	0.58	-1.9
2,984,325	+		DZA65_RS13885	0.58	-1.3
2,984,325	+		DZA65_RS13885	0.58	-3.4
2,984,325	+		DZA65_RS13885	0.58	-1.9
2,984,326	-		DZA65_RS13885	0.58	-1.6
2,984,326	-		DZA65_RS13885	0.58	+0.6
2,984,326	-		DZA65_RS13885	0.58	-0.9
2,984,326	-		DZA65_RS13885	0.58	-1.5
2,984,429	+		DZA65_RS13885	0.87	-2.3
2,984,429	+		DZA65_RS13885	0.87	-3.2
2,984,429	+		DZA65_RS13885	0.87	+0.1
2,984,429	+		DZA65_RS13885	0.87	-1.6
2,984,429	+		DZA65_RS13885	0.87	-3.0
2,984,430	-		DZA65_RS13885	0.87	-1.5
2,984,430	-		DZA65_RS13885	0.87	-1.6
2,984,430	-		DZA65_RS13885	0.87	-3.4
2,984,430	-		DZA65_RS13885	0.87	-1.3
2,984,430	-		DZA65_RS13885	0.87	-1.6
2,984,430	-		DZA65_RS13885	0.87	-1.8
2,984,430	-		DZA65_RS13885	0.87	-2.1
2,984,449	+				-0.8
2,984,450	-				-2.3
2,984,450	-				+0.7
2,984,451	+				-1.5
2,984,451	+				+0.5
2,984,452	-				-2.4
2,984,452	-				-1.6
2,984,452	-				-1.3
2,984,452	-				-2.8
2,984,494	+				-1.3
2,984,494	+				+0.9
2,984,495	-				+1.5
2,984,539	+				-0.0
2,984,539	+				+1.9
2,984,539	+				+0.1
2,984,539	+				+0.7
2,984,539	+				-2.5
2,984,539	+				-1.0
2,984,539	+				-0.3
2,984,539	+				-1.3
2,984,539	+				+0.7
2,984,539	+				+0.9
2,984,539	+				+1.2
2,984,539	+				-0.4
2,984,539	+				+0.9
2,984,539	+				+0.2
2,984,539	+				-0.6
2,984,540	-				+0.7
2,984,540	-				+0.8
2,984,540	-				+0.0
2,984,540	-				-0.1
2,984,540	-				+0.7
2,984,540	-				-0.8
2,984,541	+				-2.1
2,984,541	+				+2.3
2,984,541	+				-0.6
2,984,541	+				+1.7
2,984,541	+				-0.1
2,984,541	+				+0.8
2,984,541	+				-0.9
2,984,541	+				+0.1
2,984,542	-				-1.6
2,984,542	-				-0.7
2,984,542	-				-1.3
2,984,542	-				+0.1
2,984,542	-				-0.2
2,984,542	-				-0.9
2,984,542	-				-1.3
2,984,542	-				+0.4
2,984,542	-				-1.3
2,984,542	-				-2.5
2,984,542	-				+2.6
2,984,542	-				-0.9
2,984,542	-				+2.0
2,984,542	-				-1.1
2,984,542	-				-0.1
2,984,542	-				-0.5
2,984,542	-				-1.3
2,984,542	-				-1.2
2,984,542	-				+1.1
2,984,543	+				-0.1
2,984,543	+				-2.4
2,984,543	+				-0.5
2,984,543	+				-0.1
2,984,543	+				+0.3
2,984,543	+				-2.1
2,984,543	+				-0.3
2,984,543	+				+0.2
2,984,544	-				+0.3
2,984,544	-				-1.1
2,984,544	-				+1.7
2,984,544	-				-0.4
2,984,544	-				+1.0
2,984,544	-				+0.5
2,984,544	-				+0.9
2,984,544	-				+0.8
2,984,544	-				+0.2
2,984,544	-				+1.1
2,984,544	-				-1.1
2,984,544	-				+1.7
2,984,544	-				-1.6
2,984,544	-				-0.5
2,984,544	-				-0.5
2,984,544	-				-0.3
2,984,575	-				+2.3
2,984,605	+				+3.5
2,984,605	+				+0.5
2,984,606	-				+1.2
2,984,616	+				-1.0
2,984,616	+				-0.5
2,984,617	-				+0.5
2,984,617	-				+1.0
2,984,668	+				-1.3
2,984,668	+				-0.3
2,984,668	+				+0.9
2,984,668	+				-1.3
2,984,668	+				+1.0
2,984,668	+				-1.3
2,984,668	+				+1.1
2,984,669	-				+2.0
2,984,670	+				-2.3
2,984,670	+				+1.5
2,984,670	+				-2.0
2,984,670	+				-1.6
2,984,671	-				-1.6
2,984,671	-				-3.7
2,984,678	+				-3.5
2,984,678	+				-4.4
2,984,678	+				-1.6
2,984,678	+				-2.9
2,984,679	-				-2.1
2,984,679	-				-1.3
2,984,679	-				-1.9
2,984,679	-				-4.0
2,984,711	+		DZA65_RS13890	0.14	-2.8
2,984,711	+		DZA65_RS13890	0.14	+0.7
2,984,711	+		DZA65_RS13890	0.14	-3.7
2,984,711	+		DZA65_RS13890	0.14	-3.2
2,984,744	+		DZA65_RS13890	0.24	-3.6
2,984,744	+		DZA65_RS13890	0.24	-2.6
2,984,744	+		DZA65_RS13890	0.24	-1.0
2,984,744	+		DZA65_RS13890	0.24	-2.6
2,984,744	+		DZA65_RS13890	0.24	-2.1
2,984,744	+		DZA65_RS13890	0.24	-1.6
2,984,804	+		DZA65_RS13890	0.43	-3.0
2,984,804	+		DZA65_RS13890	0.43	-2.9
2,984,804	+		DZA65_RS13890	0.43	-3.1
2,984,804	+		DZA65_RS13890	0.43	-3.6
2,984,805	-		DZA65_RS13890	0.44	-1.3
2,984,805	-		DZA65_RS13890	0.44	-1.2
2,984,805	-		DZA65_RS13890	0.44	-2.9
2,984,805	-		DZA65_RS13890	0.44	-3.7
2,984,956	-				-2.3
2,984,975	+				-2.1
2,984,975	+				-1.6
2,984,976	-				-0.2
2,984,976	-				-2.8
2,984,976	-				-1.5
2,985,027	-				-0.8
2,985,034	-				-1.9
2,985,039	+				-3.5
2,985,039	+				-2.0
2,985,039	+				-2.3
2,985,039	+				-2.3
2,985,039	+				-0.9
2,985,039	+				-3.1
2,985,040	-				-1.6
2,985,043	+				-1.2
2,985,043	+				-0.6
2,985,043	+				-1.9
2,985,043	+				-2.7
2,985,043	+				-2.3
2,985,043	+				-2.9
2,985,044	-				+0.1
2,985,079	+				-1.6
2,985,088	+				-2.6
2,985,088	+				-1.3
2,985,088	+				-1.1
2,985,088	+				-2.3
2,985,088	+				-0.3
2,985,088	+				-1.9
2,985,088	+				-2.5
2,985,088	+				-1.9
2,985,088	+				-3.3
2,985,089	-				+0.1
2,985,089	-				-2.8
2,985,089	-				-0.3
2,985,089	-				-0.1
2,985,089	-				-1.2
2,985,089	-				+1.3
2,985,089	-				+1.2
2,985,089	-				+1.2
2,985,131	-				-0.9
2,985,133	+				-0.3
2,985,133	+				-1.6
2,985,133	+				-3.6
2,985,133	+				-2.8
2,985,133	+				-1.8
2,985,141	-				-3.1
2,985,143	-				-1.8
2,985,153	-				-2.5
2,985,153	-				-2.3
2,985,198	+				-0.3
2,985,199	-				-2.0
2,985,199	-				-2.8
2,985,212	+				-0.6
2,985,218	+				-1.3
2,985,266	-				-1.9
2,985,266	-				-1.2
2,985,266	-				-2.6
2,985,266	-				-2.9
2,985,270	+				-1.9
2,985,270	+				-2.1
2,985,270	+				-3.3
2,985,270	+				-3.8
2,985,270	+				-3.8
2,985,308	+				-4.3
2,985,308	+				-2.5
2,985,308	+				-3.0
2,985,309	-				-2.3
2,985,309	-				-0.9
2,985,309	-				-4.0
2,985,309	-				-2.3
2,985,309	-				-2.6
2,985,309	-				-1.6
2,985,309	-				-1.8
2,985,309	-				-2.1
2,985,313	+				-1.4
2,985,313	+				+0.3
2,985,313	+				-0.9
2,985,313	+				-4.2
2,985,313	+				-2.1
2,985,313	+				-2.1
2,985,313	+				-2.5
2,985,314	-				-0.9
2,985,314	-				-3.4
2,985,314	-				-2.8
2,985,324	+				-1.3
2,985,324	+				-1.4
2,985,324	+				-4.2
2,985,325	-				-1.8
2,985,325	-				-1.6
2,985,366	+				-1.6
2,985,367	-				-2.1
2,985,367	-				-4.1
2,985,367	-				-3.4
2,985,391	+				+0.5
2,985,391	+				-0.3
2,985,391	+				-3.0
2,985,392	-				+0.2
2,985,392	-				-0.9
2,985,403	-				-4.9
2,985,424	+				-3.7
2,985,424	+				-3.8
2,985,424	+				-3.6
2,985,425	-				-1.1
2,985,425	-				-1.1
2,985,425	-				-0.9
2,985,437	-				-3.9