Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12700

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,716,303	+		DZA65_RS12695	0.76	-1.6
2,716,303	+		DZA65_RS12695	0.76	-0.5
2,716,303	+		DZA65_RS12695	0.76	+0.2
2,716,304	-		DZA65_RS12695	0.76	-2.0
2,716,381	+		DZA65_RS12695	0.80	-2.9
2,716,381	+		DZA65_RS12695	0.80	-0.6
2,716,381	+		DZA65_RS12695	0.80	-0.2
2,716,382	-		DZA65_RS12695	0.80	-0.7
2,716,383	+		DZA65_RS12695	0.80	-0.8
2,716,384	-		DZA65_RS12695	0.80	+1.1
2,716,696	+				-0.7
2,716,696	+				+0.3
2,716,696	+				-1.0
2,716,696	+				+0.6
2,716,696	+				-0.2
2,716,697	-				-0.6
2,716,697	-				+2.2
2,716,697	-				-1.0
2,716,697	-				+1.7
2,716,697	-				-0.6
2,716,716	+				-1.0
2,716,716	+				-3.1
2,716,716	+				-1.0
2,716,716	+				+0.9
2,716,716	+				-0.3
2,716,717	-				-1.5
2,716,717	-				-1.4
2,716,717	-				+0.2
2,716,717	-				-0.2
2,716,717	-				+0.7
2,716,717	-				+1.3
2,716,717	-				+0.2
2,716,717	-				-2.1
2,716,717	-				+1.0
2,716,718	+				-0.4
2,716,719	-				-1.4
2,716,719	-				+1.3
2,716,741	+				+0.8
2,716,741	+				-0.7
2,716,741	+				+1.0
2,716,742	-				-0.4
2,716,745	+				+0.4
2,716,746	-				-0.3
2,716,805	+				-0.4
2,716,805	+				+0.3
2,716,806	-				+0.2
2,716,814	+				+0.1
2,716,816	+				-0.4
2,716,816	+				+0.0
2,716,816	+				-1.0
2,716,817	-				+2.2
2,716,817	-				-0.2
2,716,818	+				-0.5
2,716,818	+				+2.1
2,716,819	-				+0.6
2,716,819	-				+1.6
2,716,874	+				+0.5
2,716,874	+				-1.6
2,716,874	+				+0.7
2,716,875	-				-0.6
2,716,875	-				-0.4
2,716,897	-				+0.2
2,716,932	-				+0.6
2,716,932	-				-1.2
2,717,001	+				-1.7
2,717,001	+				+1.9
2,717,002	-				+0.9
2,717,003	+				+1.3
2,717,003	+				+0.6
2,717,012	+				-0.1
2,717,018	+				+0.6
2,717,075	+				+0.6
2,717,075	+				+1.1
2,717,075	+				-0.2
2,717,075	+				-2.2
2,717,075	+				+1.5
2,717,075	+				+0.6
2,717,075	+				+2.5
2,717,075	+				-0.6
2,717,075	+				-0.0
2,717,075	+				-1.4
2,717,075	+				+0.0
2,717,076	-				+0.6
2,717,076	-				+1.6
2,717,076	-				+1.5
2,717,076	-				-2.4
2,717,076	-				+0.5
2,717,076	-				-0.1
2,717,076	-				+0.0
2,717,077	+				+0.0
2,717,077	+				-2.7
2,717,077	+				-1.7
2,717,077	+				+1.9
2,717,077	+				+1.8
2,717,077	+				-1.4
2,717,077	+				+0.4
2,717,077	+				-0.1
2,717,078	-				-0.6
2,717,078	-				-2.7
2,717,078	-				+0.6
2,717,078	-				-0.4
2,717,078	-				+1.3
2,717,078	-				-1.0
2,717,078	-				-0.4
2,717,078	-				+1.5
2,717,079	+				-0.4
2,717,079	+				+1.0
2,717,080	-				-0.1
2,717,080	-				-0.6
2,717,080	-				-2.2
2,717,080	-				-1.4
2,717,085	-				-0.4
2,717,085	-				-0.5
2,717,085	-				-2.0
2,717,165	+				+0.3
2,717,201	+				+0.4
2,717,201	+				+0.9
2,717,202	-				-0.1
2,717,202	-				+1.3
2,717,203	+				+0.2
2,717,203	+				-2.6
2,717,203	+				+0.6
2,717,203	+				-0.4
2,717,203	+				+0.6
2,717,203	+				+1.3
2,717,203	+				-0.6
2,717,203	+				-2.0
2,717,204	-				-0.9
2,717,204	-				-1.0
2,717,223	+				-0.7
2,717,223	+				-0.6
2,717,223	+				-1.2
2,717,223	+				-1.4
2,717,223	+				-1.0
2,717,223	+				+0.3
2,717,223	+				+0.6
2,717,241	-				-0.6
2,717,246	+				-1.2
2,717,300	+				-0.0
2,717,353	+				-3.2
2,717,353	+				+1.2
2,717,353	+				-2.0
2,717,353	+				-0.2
2,717,353	+				-0.9
2,717,354	-				+0.6
2,717,354	-				-0.3
2,717,354	-				+0.8
2,717,354	-				-1.6
2,717,360	+				+1.4
2,717,360	+				-1.4
2,717,361	-				-1.2
2,717,365	+				+1.6
2,717,365	+				-0.4
2,717,377	+				-3.4
2,717,447	-		DZA65_RS12700	0.12	+2.2
2,717,544	-		DZA65_RS12700	0.18	+0.6
2,717,597	+		DZA65_RS12700	0.21	-0.3
2,717,597	+		DZA65_RS12700	0.21	+0.3
2,717,597	+		DZA65_RS12700	0.21	-1.1
2,717,597	+		DZA65_RS12700	0.21	-0.4
2,717,598	-		DZA65_RS12700	0.21	-0.1
2,717,598	-		DZA65_RS12700	0.21	-1.4
2,717,599	+		DZA65_RS12700	0.21	-1.6
2,717,599	+		DZA65_RS12700	0.21	-2.7
2,717,599	+		DZA65_RS12700	0.21	+0.6
2,717,599	+		DZA65_RS12700	0.21	+0.4
2,717,599	+		DZA65_RS12700	0.21	+0.2
2,717,599	+		DZA65_RS12700	0.21	+0.6
2,717,599	+		DZA65_RS12700	0.21	+1.5
2,717,599	+		DZA65_RS12700	0.21	-0.9
2,717,599	+		DZA65_RS12700	0.21	+1.2
2,717,599	+		DZA65_RS12700	0.21	-0.4
2,717,599	+		DZA65_RS12700	0.21	-1.4
2,717,599	+		DZA65_RS12700	0.21	-0.7
2,717,599	+		DZA65_RS12700	0.21	+0.1
2,717,599	+		DZA65_RS12700	0.21	+0.5
2,717,599	+		DZA65_RS12700	0.21	+0.6
2,717,600	-		DZA65_RS12700	0.22	+2.3
2,717,600	-		DZA65_RS12700	0.22	-2.4
2,717,600	-		DZA65_RS12700	0.22	-0.0
2,717,600	-		DZA65_RS12700	0.22	-0.8
2,717,600	-		DZA65_RS12700	0.22	-1.1
2,717,600	-		DZA65_RS12700	0.22	-0.4
2,717,600	-		DZA65_RS12700	0.22	-0.9
2,717,600	-		DZA65_RS12700	0.22	+0.8
2,717,600	-		DZA65_RS12700	0.22	+1.2
2,717,600	-		DZA65_RS12700	0.22	-0.3
2,717,600	-		DZA65_RS12700	0.22	+0.6
2,717,600	-		DZA65_RS12700	0.22	+0.3
2,717,600	-		DZA65_RS12700	0.22	+0.3
2,717,654	+		DZA65_RS12700	0.25	-2.2
2,717,655	-		DZA65_RS12700	0.25	+0.0
2,717,655	-		DZA65_RS12700	0.25	+1.0
2,717,655	-		DZA65_RS12700	0.25	+0.0
2,717,680	+		DZA65_RS12700	0.27	+0.9
2,717,680	+		DZA65_RS12700	0.27	+1.0
2,717,681	-		DZA65_RS12700	0.27	-1.4
2,717,694	+		DZA65_RS12700	0.28	-1.2
2,717,694	+		DZA65_RS12700	0.28	+2.6
2,717,695	-		DZA65_RS12700	0.28	-1.7
2,717,695	-		DZA65_RS12700	0.28	+0.6
2,717,695	-		DZA65_RS12700	0.28	-0.7
2,717,752	+		DZA65_RS12700	0.31	+0.2
2,717,752	+		DZA65_RS12700	0.31	-0.7
2,717,753	-		DZA65_RS12700	0.31	+0.1
2,717,753	-		DZA65_RS12700	0.31	+0.3
2,717,760	+		DZA65_RS12700	0.32	+0.1
2,717,761	-		DZA65_RS12700	0.32	+0.2
2,717,807	+		DZA65_RS12700	0.35	+0.3
2,717,807	+		DZA65_RS12700	0.35	-1.4
2,717,808	-		DZA65_RS12700	0.35	+1.9
2,717,808	-		DZA65_RS12700	0.35	+0.9
2,717,808	-		DZA65_RS12700	0.35	-1.0
2,717,808	-		DZA65_RS12700	0.35	+1.2
2,717,814	+		DZA65_RS12700	0.35	-0.5
2,717,815	-		DZA65_RS12700	0.35	-1.0
2,717,854	+		DZA65_RS12700	0.38	-0.7
2,717,869	+		DZA65_RS12700	0.39	+0.8
2,717,869	+		DZA65_RS12700	0.39	-0.4
2,717,901	+				+0.6
2,717,901	+		DZA65_RS12700	0.41	-0.6
2,717,987	+		DZA65_RS12700	0.47	+1.4
2,717,988	-		DZA65_RS12700	0.47	+0.6
2,717,988	-		DZA65_RS12700	0.47	+0.1
2,718,210	+		DZA65_RS12700	0.61	-0.6
2,718,210	+		DZA65_RS12700	0.61	-0.4
2,718,211	-		DZA65_RS12700	0.61	+0.8
2,718,211	-		DZA65_RS12700	0.61	-1.0
2,718,211	-		DZA65_RS12700	0.61	-0.4
2,718,226	+		DZA65_RS12700	0.62	+0.2
2,718,226	+		DZA65_RS12700	0.62	+1.3
2,718,538	-		DZA65_RS12700	0.82	+1.8
2,718,538	-		DZA65_RS12700	0.82	+1.2
2,718,538	-		DZA65_RS12700	0.82	+2.6
2,718,609	+		DZA65_RS12700	0.87	-0.9
2,718,609	+		DZA65_RS12700	0.87	+1.6
2,718,609	+		DZA65_RS12700	0.87	+0.6
2,718,610	-		DZA65_RS12700	0.87	+0.6
2,718,610	-		DZA65_RS12700	0.87	-2.2
2,718,610	-		DZA65_RS12700	0.87	-1.7
2,718,610	-		DZA65_RS12700	0.87	+0.3
2,718,610	-		DZA65_RS12700	0.87	+0.7
2,718,610	-		DZA65_RS12700	0.87	-0.4
2,718,610	-		DZA65_RS12700	0.87	-0.9
2,718,613	+		DZA65_RS12700	0.87	+0.2
2,718,613	+		DZA65_RS12700	0.87	-1.4
2,718,613	+		DZA65_RS12700	0.87	+0.3
2,718,613	+		DZA65_RS12700	0.87	+0.2
2,718,638	-		DZA65_RS12700	0.89	-2.0
2,718,804	+				+1.6
2,718,804	+				-1.4
2,718,805	-				-1.0
2,718,805	-				+1.1
2,718,805	-				+0.6
2,718,946	+		DZA65_RS12705	0.22	-0.8
2,718,947	-		DZA65_RS12705	0.22	+0.5
2,718,947	-		DZA65_RS12705	0.22	+1.3
2,718,947	-		DZA65_RS12705	0.22	+0.4
2,718,947	-				+0.0
2,718,947	-		DZA65_RS12705	0.22	-0.6
2,718,948	+		DZA65_RS12705	0.22	-0.4
2,718,948	+		DZA65_RS12705	0.22	+1.7
2,718,949	-		DZA65_RS12705	0.23	+0.6
2,718,949	-		DZA65_RS12705	0.23	-1.0
2,718,949	-		DZA65_RS12705	0.23	+1.6
2,719,026	+		DZA65_RS12705	0.48	+0.5
2,719,072	+		DZA65_RS12705	0.64	+0.7
2,719,072	+		DZA65_RS12705	0.64	+0.6
2,719,075	+		DZA65_RS12705	0.65	+0.6
2,719,093	+		DZA65_RS12705	0.71	-0.2
2,719,148	+		DZA65_RS12705	0.89	+0.3
2,719,157	+				+0.0
2,719,196	+				-2.2
2,719,196	+				+1.9
2,719,197	-				+1.3
2,719,219	+				-1.0
2,719,220	-				-2.6
2,719,228	+				-0.4
2,719,228	+				+1.2
2,719,229	-				-0.0
2,719,232	+				+0.4
2,719,232	+				+0.6
2,719,233	-				-0.1
2,719,233	-				+0.2
2,719,233	-				+1.6
2,719,246	-				-1.6
2,719,336	+				-1.0
2,719,337	-				+0.2
2,719,350	+				+0.6
2,719,354	+				-0.6
2,719,365	-				+2.1
2,719,369	-				+1.6
2,719,405	+				+0.5
2,719,408	+				-0.8
2,719,408	+				-2.0
2,719,409	-				-0.4
2,719,411	+				-0.4
2,719,412	-				-2.4
2,719,424	+				-0.4
2,719,425	-				+0.6
2,719,443	-				-1.2
2,719,443	-				-0.5
2,719,443	-				-0.4
2,719,456	+				+1.3
2,719,457	-				-0.1
2,719,460	+				-1.0
2,719,498	-				-2.7
2,719,511	-				-2.4
2,719,532	+				+1.6
2,719,532	+				-1.0
2,719,532	+				+0.6
2,719,533	-				+0.2
2,719,533	-				+0.3
2,719,533	-				-1.2
2,719,533	-				+1.1
2,719,540	-				+1.1
2,719,540	-				-0.8
2,719,577	+				+1.6
2,719,577	+				-1.0
2,719,577	+				-3.0
2,719,578	-		DZA65_RS12710	0.10	+2.2
2,719,578	-		DZA65_RS12710	0.10	-0.4
2,719,578	-		DZA65_RS12710	0.10	+1.2
2,719,578	-		DZA65_RS12710	0.10	+0.5
2,719,579	+		DZA65_RS12710	0.10	+0.1
2,719,579	+		DZA65_RS12710	0.10	-0.1
2,719,579	+		DZA65_RS12710	0.10	-1.0
2,719,579	+		DZA65_RS12710	0.10	+0.4
2,719,579	+		DZA65_RS12710	0.10	+1.2
2,719,579	+		DZA65_RS12710	0.10	+0.9
2,719,579	+		DZA65_RS12710	0.10	+0.6
2,719,579	+		DZA65_RS12710	0.10	+1.4
2,719,580	-		DZA65_RS12710	0.10	-0.1
2,719,580	-		DZA65_RS12710	0.10	+0.9
2,719,580	-		DZA65_RS12710	0.10	-0.7
2,719,580	-		DZA65_RS12710	0.10	+1.4
2,719,580	-		DZA65_RS12710	0.10	+0.9
2,719,580	-		DZA65_RS12710	0.10	-1.4
2,719,580	-		DZA65_RS12710	0.10	+0.6
2,719,580	-		DZA65_RS12710	0.10	+0.1
2,719,580	-		DZA65_RS12710	0.10	-0.7
2,719,580	-		DZA65_RS12710	0.10	+2.6
2,719,584	+		DZA65_RS12710	0.11	-1.1
2,719,584	+				+0.0
2,719,584	+		DZA65_RS12710	0.11	-0.4
2,719,585	-		DZA65_RS12710	0.11	+0.1
2,719,701	+		DZA65_RS12710	0.28	-0.1
2,719,738	+		DZA65_RS12710	0.33	-0.9
2,719,738	+		DZA65_RS12710	0.33	-2.0
2,719,808	-		DZA65_RS12710	0.44	-1.1
2,719,808	-		DZA65_RS12710	0.44	+0.7