Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08945

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,884,692	+		DZA65_RS08940	0.21	-1.7
1,884,692	+		DZA65_RS08940	0.21	+1.8
1,884,693	-		DZA65_RS08940	0.21	-1.6
1,884,693	-		DZA65_RS08940	0.21	+1.2
1,884,693	-		DZA65_RS08940	0.21	+0.1
1,884,712	+		DZA65_RS08940	0.23	+1.8
1,884,712	+		DZA65_RS08940	0.23	+1.1
1,884,770	+		DZA65_RS08940	0.30	-0.6
1,884,770	+		DZA65_RS08940	0.30	+1.4
1,884,771	-		DZA65_RS08940	0.30	-0.4
1,884,776	-		DZA65_RS08940	0.30	-1.0
1,884,824	+		DZA65_RS08940	0.36	-1.0
1,884,851	+		DZA65_RS08940	0.39	+0.8
1,884,916	+		DZA65_RS08940	0.46	+1.6
1,884,917	-		DZA65_RS08940	0.46	-1.0
1,885,018	+		DZA65_RS08940	0.58	-0.7
1,885,018	+		DZA65_RS08940	0.58	+0.6
1,885,018	+		DZA65_RS08940	0.58	+0.6
1,885,018	+		DZA65_RS08940	0.58	-2.2
1,885,018	+		DZA65_RS08940	0.58	-1.7
1,885,018	+		DZA65_RS08940	0.58	+2.3
1,885,019	-		DZA65_RS08940	0.58	-0.1
1,885,019	-		DZA65_RS08940	0.58	+0.2
1,885,019	-		DZA65_RS08940	0.58	-1.0
1,885,019	-		DZA65_RS08940	0.58	+0.6
1,885,019	-		DZA65_RS08940	0.58	+1.4
1,885,019	-		DZA65_RS08940	0.58	-0.6
1,885,127	+		DZA65_RS08940	0.70	+0.6
1,885,141	+		DZA65_RS08940	0.71	-0.6
1,885,141	+		DZA65_RS08940	0.71	+0.8
1,885,141	+		DZA65_RS08940	0.71	-0.4
1,885,141	+		DZA65_RS08940	0.71	-0.4
1,885,142	-		DZA65_RS08940	0.72	-1.7
1,885,459	-				-1.0
1,885,468	+				-0.1
1,885,468	+				+0.3
1,885,468	+				-0.1
1,885,490	+				-0.7
1,885,534	-				+0.0
1,885,618	+				-0.2
1,885,619	-				+0.0
1,885,619	-				-0.8
1,885,619	-				-0.2
1,886,073	+		DZA65_RS08945	0.66	+1.5
1,886,073	+		DZA65_RS08945	0.66	+0.0
1,886,073	+		DZA65_RS08945	0.66	+0.7
1,886,073	+		DZA65_RS08945	0.66	-2.0
1,886,074	-		DZA65_RS08945	0.66	-0.9
1,886,074	-		DZA65_RS08945	0.66	-1.4
1,886,083	+		DZA65_RS08945	0.67	+0.0
1,886,083	+		DZA65_RS08945	0.67	-0.2
1,886,083	+		DZA65_RS08945	0.67	+1.2
1,886,083	+		DZA65_RS08945	0.67	+1.3
1,886,083	+		DZA65_RS08945	0.67	+0.2
1,886,084	-		DZA65_RS08945	0.67	+1.4
1,886,084	-		DZA65_RS08945	0.67	-0.1
1,886,084	-		DZA65_RS08945	0.67	+1.0
1,886,084	-		DZA65_RS08945	0.67	-1.0
1,886,152	+		DZA65_RS08945	0.77	+0.6
1,886,152	+		DZA65_RS08945	0.77	-1.2
1,886,152	+		DZA65_RS08945	0.77	-0.4
1,886,152	+		DZA65_RS08945	0.77	-0.4
1,886,153	-		DZA65_RS08945	0.77	-0.4
1,886,161	+		DZA65_RS08945	0.78	+1.2
1,886,161	+		DZA65_RS08945	0.78	-0.4
1,886,162	-		DZA65_RS08945	0.78	+2.7
1,886,162	-		DZA65_RS08945	0.78	+0.6
1,886,162	-		DZA65_RS08945	0.78	+1.6
1,886,305	+				+1.8
1,886,305	+				-2.0
1,886,305	+				-0.1
1,886,305	+				+0.6
1,886,306	-				-2.0
1,886,306	-				-1.4
1,886,306	-				+0.6
1,886,306	-				-3.4
1,886,416	+		DZA65_RS08950	0.25	-0.1
1,886,416	+		DZA65_RS08950	0.25	+0.3
1,886,469	+		DZA65_RS08950	0.37	-0.8
1,886,469	+		DZA65_RS08950	0.37	+1.0
1,886,469	+		DZA65_RS08950	0.37	+0.8
1,886,469	+		DZA65_RS08950	0.37	-2.2
1,886,470	-		DZA65_RS08950	0.38	-2.4
1,886,470	-		DZA65_RS08950	0.38	+0.7
1,886,470	-		DZA65_RS08950	0.38	+1.1
1,886,470	-		DZA65_RS08950	0.38	+0.3
1,886,472	+		DZA65_RS08950	0.38	-2.2
1,886,472	+		DZA65_RS08950	0.38	-0.4
1,886,472	+		DZA65_RS08950	0.38	-2.4
1,886,472	+		DZA65_RS08950	0.38	+2.4
1,886,472	+		DZA65_RS08950	0.38	-2.4
1,886,472	+		DZA65_RS08950	0.38	-0.4
1,886,472	+		DZA65_RS08950	0.38	+0.0
1,886,473	-		DZA65_RS08950	0.38	-0.8
1,886,473	-		DZA65_RS08950	0.38	+2.0
1,886,473	-		DZA65_RS08950	0.38	+0.8
1,886,473	-		DZA65_RS08950	0.38	-0.0
1,886,473	-		DZA65_RS08950	0.38	-1.4
1,886,473	-		DZA65_RS08950	0.38	-1.0
1,886,473	-		DZA65_RS08950	0.38	+0.6
1,886,517	+		DZA65_RS08950	0.49	-0.4
1,886,517	+		DZA65_RS08950	0.49	-1.4
1,886,517	+		DZA65_RS08950	0.49	-0.6
1,886,517	+		DZA65_RS08950	0.49	+0.6
1,886,517	+		DZA65_RS08950	0.49	-0.4
1,886,518	-		DZA65_RS08950	0.49	-0.6
1,886,518	-		DZA65_RS08950	0.49	+0.6
1,886,633	+		DZA65_RS08950	0.77	+1.2
1,886,634	-		DZA65_RS08950	0.78	-0.4
1,886,642	+		DZA65_RS08950	0.80	-1.2
1,886,670	+		DZA65_RS08950	0.86	+0.3
1,886,671	-		DZA65_RS08950	0.87	+0.6
1,886,691	-				+1.3
1,886,694	+				-2.4
1,886,695	-				-0.8
1,886,759	+				-0.6
1,886,759	+				-0.4
1,886,760	-				-0.7
1,886,766	-				-1.2
1,886,766	-				-1.7
1,886,769	-				+1.1
1,886,769	-				+0.2
1,886,769	-				-0.4
1,886,783	-				-1.4
1,886,817	+				+1.2
1,886,817	+				-0.5
1,886,817	+				-1.0
1,886,818	-				-0.4
1,886,818	-				+0.2
1,886,818	-				+1.3
1,886,818	-				+0.6
1,886,918	-		DZA65_RS08955	0.11	-0.3
1,887,000	+		DZA65_RS08955	0.33	-0.4
1,887,000	+		DZA65_RS08955	0.33	+0.4
1,887,001	-		DZA65_RS08955	0.34	+1.0
1,887,001	-		DZA65_RS08955	0.34	-0.1
1,887,032	+		DZA65_RS08955	0.42	-1.7
1,887,032	+		DZA65_RS08955	0.42	+0.3
1,887,033	-		DZA65_RS08955	0.42	-2.7
1,887,033	-		DZA65_RS08955	0.42	-1.9
1,887,033	-		DZA65_RS08955	0.42	+1.1
1,887,033	-		DZA65_RS08955	0.42	-2.7
1,887,112	+		DZA65_RS08955	0.64	-1.4
1,887,112	+		DZA65_RS08955	0.64	-2.2
1,887,112	+		DZA65_RS08955	0.64	+0.4
1,887,114	+		DZA65_RS08955	0.65	-0.3
1,887,114	+		DZA65_RS08955	0.65	+0.5
1,887,114	+		DZA65_RS08955	0.65	+0.0
1,887,114	+		DZA65_RS08955	0.65	+1.6
1,887,114	+		DZA65_RS08955	0.65	+0.2
1,887,114	+		DZA65_RS08955	0.65	-1.1
1,887,114	+		DZA65_RS08955	0.65	+0.6
1,887,114	+		DZA65_RS08955	0.65	+1.0
1,887,114	+				-0.4
1,887,115	-		DZA65_RS08955	0.65	+0.4
1,887,115	-		DZA65_RS08955	0.65	-1.4
1,887,115	-		DZA65_RS08955	0.65	+0.0
1,887,115	-		DZA65_RS08955	0.65	-3.2
1,887,115	-		DZA65_RS08955	0.65	-0.9
1,887,115	-		DZA65_RS08955	0.65	+1.3
1,887,115	-		DZA65_RS08955	0.65	+0.6
1,887,115	-		DZA65_RS08955	0.65	+2.2
1,887,115	-		DZA65_RS08955	0.65	+0.4
1,887,165	+		DZA65_RS08955	0.79	+0.4
1,887,244	-		DZA65_RS22840	0.19	+0.5