Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08685

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,836,675	-		DZA65_RS08675	0.67	-0.5
1,836,675	-		DZA65_RS08675	0.67	-0.4
1,836,743	+		DZA65_RS08675	0.76	+1.0
1,836,744	-		DZA65_RS08675	0.77	-2.5
1,836,790	+		DZA65_RS08675	0.83	+0.5
1,836,790	+		DZA65_RS08675	0.83	+1.1
1,836,790	+		DZA65_RS08675	0.83	-1.4
1,836,791	-		DZA65_RS08675	0.83	-0.0
1,836,826	-		DZA65_RS08675	0.88	-1.7
1,836,862	+				-1.7
1,836,863	-				-0.8
1,836,863	-				-0.4
1,836,988	+		DZA65_RS08680	0.22	+1.6
1,836,988	+		DZA65_RS08680	0.22	-1.0
1,836,988	+		DZA65_RS08680	0.22	+0.3
1,836,988	+		DZA65_RS08680	0.22	-0.2
1,836,988	+		DZA65_RS08680	0.22	+0.5
1,836,988	+		DZA65_RS08680	0.22	-0.2
1,836,988	+		DZA65_RS08680	0.22	-1.9
1,836,988	+		DZA65_RS08680	0.22	-0.4
1,836,989	-		DZA65_RS08680	0.22	-3.1
1,836,989	-		DZA65_RS08680	0.22	+1.2
1,837,025	+		DZA65_RS08680	0.31	+0.6
1,837,059	+		DZA65_RS08680	0.39	+1.6
1,837,059	+		DZA65_RS08680	0.39	+0.6
1,837,060	-		DZA65_RS08680	0.39	+0.4
1,837,060	-		DZA65_RS08680	0.39	-3.3
1,837,060	-		DZA65_RS08680	0.39	+1.3
1,837,060	-		DZA65_RS08680	0.39	-1.8
1,837,102	+		DZA65_RS08680	0.49	+0.6
1,837,103	-		DZA65_RS08680	0.50	+0.6
1,837,103	-		DZA65_RS08680	0.50	-2.0
1,837,103	-		DZA65_RS08680	0.50	+0.4
1,837,103	-		DZA65_RS08680	0.50	-1.4
1,837,104	+		DZA65_RS08680	0.50	+0.6
1,837,104	+		DZA65_RS08680	0.50	-0.4
1,837,104	+		DZA65_RS08680	0.50	-1.7
1,837,105	-		DZA65_RS08680	0.50	-2.2
1,837,105	-		DZA65_RS08680	0.50	-0.1
1,837,257	+		DZA65_RS08680	0.87	-1.2
1,837,258	-		DZA65_RS08680	0.87	-1.0
1,837,258	-		DZA65_RS08680	0.87	+2.2
1,837,265	+		DZA65_RS08680	0.88	-1.0
1,837,306	+				+0.6
1,837,389	+				+1.2
1,837,403	-				-0.5
1,837,403	-				+0.9
1,837,438	+				-1.7
1,837,439	-				+1.4
1,837,465	+				-2.2
1,837,466	-				+1.9
1,837,473	-				+0.6
1,837,473	-				-0.2
1,837,473	-				-1.0
1,837,479	+				+0.8
1,837,479	+				-1.0
1,837,480	-				+2.6
1,837,480	-				-0.0
1,837,480	-				+0.0
1,837,480	-				+0.9
1,837,480	-				-1.0
1,837,480	-				+0.8
1,837,480	-				+0.2
1,837,486	+				-1.2
1,837,486	+				+0.6
1,837,486	+				+2.6
1,837,486	+				-1.0
1,837,487	-				+0.4
1,837,487	-				+0.3
1,837,487	-				-2.2
1,837,487	-				+0.6
1,837,487	-				+0.1
1,837,493	+				+0.9
1,837,493	+				-0.4
1,837,493	+				-0.2
1,837,493	+				+1.0
1,837,493	+				+0.2
1,837,493	+				-1.0
1,837,493	+				+0.7
1,837,494	-				-1.0
1,837,494	-				-1.7
1,837,494	-				-0.5
1,837,494	-				+0.6
1,837,494	-				-0.7
1,837,494	-				-2.0
1,837,500	+				+0.0
1,837,500	+				-0.5
1,837,500	+				+1.1
1,837,500	+				-0.2
1,837,500	+				-0.7
1,837,500	+				-1.4
1,837,500	+				+1.2
1,837,501	-				+0.6
1,837,501	-				-0.4
1,837,501	-				+1.6
1,837,501	-				-1.1
1,837,507	+				+0.2
1,837,507	+				-2.0
1,837,507	+				-0.4
1,837,507	+				+1.5
1,837,508	-				-0.4
1,837,508	-				-1.8
1,837,508	-				-1.7
1,837,508	-				+0.6
1,837,508	-				-1.2
1,837,508	-				-0.0
1,837,580	+				+0.5
1,837,580	+				+1.2
1,837,580	+				+0.8
1,837,633	+				+0.6
1,837,634	-				-3.4
1,837,693	-				-1.8
1,837,693	-				-2.8
1,837,724	-				+0.4
1,837,956	+		DZA65_RS08685	0.15	+2.4
1,837,957	-		DZA65_RS08685	0.15	+0.6
1,837,957	-		DZA65_RS08685	0.15	+0.0
1,837,959	+		DZA65_RS08685	0.15	-1.7
1,837,960	-		DZA65_RS08685	0.15	-0.1
1,838,068	+		DZA65_RS08685	0.20	+0.0
1,838,069	-		DZA65_RS08685	0.20	+1.7
1,838,069	-		DZA65_RS08685	0.20	+1.0
1,838,069	-		DZA65_RS08685	0.20	+0.4
1,838,069	-		DZA65_RS08685	0.20	+1.6
1,838,565	-		DZA65_RS08685	0.42	-0.5
1,838,565	-		DZA65_RS08685	0.42	+0.6
1,838,687	-		DZA65_RS08685	0.48	-1.0
1,838,866	+		DZA65_RS08685	0.56	+0.6
1,838,866	+		DZA65_RS08685	0.56	+0.1
1,838,866	+		DZA65_RS08685	0.56	+0.2
1,838,866	+		DZA65_RS08685	0.56	-0.1
1,838,866	+		DZA65_RS08685	0.56	+0.8
1,838,866	+		DZA65_RS08685	0.56	+0.0
1,838,866	+		DZA65_RS08685	0.56	-3.4
1,838,867	-		DZA65_RS08685	0.56	-0.1
1,838,867	-		DZA65_RS08685	0.56	+0.2
1,838,867	-		DZA65_RS08685	0.56	-0.8
1,838,867	-		DZA65_RS08685	0.56	+0.2
1,838,867	-				+0.0
1,839,047	+		DZA65_RS08685	0.64	+0.2
1,839,047	+		DZA65_RS08685	0.64	+1.0
1,839,172	+		DZA65_RS08685	0.70	+0.8
1,839,173	-		DZA65_RS08685	0.70	-1.0
1,839,229	+		DZA65_RS08685	0.73	-0.5
1,839,230	-		DZA65_RS08685	0.73	+0.3
1,839,230	-		DZA65_RS08685	0.73	+0.6
1,839,230	-		DZA65_RS08685	0.73	+1.2
1,839,272	-		DZA65_RS08685	0.74	+2.4
1,839,400	+		DZA65_RS08685	0.80	-1.6
1,839,401	-		DZA65_RS08685	0.80	-1.7
1,839,526	+		DZA65_RS08685	0.86	-1.0
1,839,526	+		DZA65_RS08685	0.86	-1.0
1,839,571	+		DZA65_RS08685	0.88	+0.3
1,839,659	+				-0.6
1,839,673	+				+0.6
1,839,673	+				+2.5
1,839,673	+				+2.3
1,839,673	+				+0.6
1,839,674	-				-1.2
1,839,674	-				-2.0
1,839,674	-				+0.0
1,839,794	+				-0.4
1,839,794	+				+0.0
1,839,818	+				+0.9
1,839,818	+				+0.5
1,839,819	-				+0.4
1,839,819	-				-0.9
1,839,842	+				-0.4
1,839,842	+				+1.2
1,839,843	-				+1.6
1,839,843	-				+1.0
1,839,843	-				-0.2
1,839,847	+				-0.2
1,839,847	+				+1.0
1,839,848	-				-0.6
1,839,848	-				+0.7
1,839,848	-				-2.0
1,839,848	-				+0.0
1,839,848	-				-0.6
1,839,848	-				+0.6
1,839,848	-				+0.0
1,839,949	+				+0.8
1,840,032	+				-1.4
1,840,032	+				-2.1
1,840,032	+				-0.2
1,840,032	+				+0.3
1,840,032	+				+1.4
1,840,033	-				-1.4
1,840,033	-				-1.3
1,840,033	-				+0.2
1,840,033	-				-1.0
1,840,033	-				+0.4
1,840,033	-				-1.5
1,840,037	+				+0.9
1,840,038	-				-3.0
1,840,038	-				-1.7
1,840,077	+				-0.4
1,840,089	+				+0.8
1,840,092	+				-0.3
1,840,116	+				-0.2
1,840,116	+				+0.4
1,840,138	+				-1.7
1,840,138	+				+1.7
1,840,139	-				-1.4
1,840,180	+				-1.2
1,840,240	+				+0.1
1,840,240	+				+1.5
1,840,240	+				+0.3
1,840,240	+				+0.6
1,840,288	-				-0.8
1,840,310	+				-1.4
1,840,311	-				-0.1
1,840,315	-				-1.0
1,840,330	+				-1.0
1,840,331	-				-1.4
1,840,331	-				-1.7
1,840,331	-				-1.0
1,840,331	-				-0.1
1,840,333	+				-0.7
1,840,333	+				+1.3
1,840,333	+				+1.9
1,840,334	-				+0.8
1,840,334	-				-1.0
1,840,334	-				-0.6
1,840,349	-				-0.9
1,840,417	+				-1.2
1,840,417	+				-1.0
1,840,418	-				+2.8
1,840,421	+				-1.7
1,840,422	-				+0.9
1,840,446	+				-1.2
1,840,446	+				-0.2
1,840,446	+				-0.2
1,840,446	+				+0.3
1,840,446	+				+0.4
1,840,447	-				+1.9
1,840,447	-				+0.8
1,840,474	+				+0.1
1,840,474	+				+1.6
1,840,475	-				-1.7
1,840,475	-				+0.4
1,840,476	+				+0.4
1,840,476	+				+0.3
1,840,477	-				-1.7
1,840,504	-				+0.2
1,840,535	+				-0.6
1,840,536	-				-2.4
1,840,536	-				+1.4
1,840,536	-				+0.0
1,840,631	-		DZA65_RS08690	0.21	-1.8
1,840,632	+		DZA65_RS08690	0.22	+0.2
1,840,741	+		DZA65_RS08690	0.36	-2.0
1,840,742	-		DZA65_RS08690	0.36	+1.3
1,840,742	-		DZA65_RS08690	0.36	-2.2
1,840,754	+		DZA65_RS08690	0.38	-2.0
1,840,755	-				-1.7
1,840,755	-		DZA65_RS08690	0.38	+1.5
1,840,755	-		DZA65_RS08690	0.38	-0.2
1,840,755	-		DZA65_RS08690	0.38	+0.0
1,840,755	-		DZA65_RS08690	0.38	-0.4
1,840,792	+		DZA65_RS08690	0.42	-1.1
1,840,792	+		DZA65_RS08690	0.42	-1.8
1,840,792	+				-2.0
1,840,793	-		DZA65_RS08690	0.43	-2.5
1,840,793	-		DZA65_RS08690	0.43	-0.7
1,840,793	-		DZA65_RS08690	0.43	+2.3