Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22655

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,898,229	+		DZA65_RS22650	0.42	-0.3
4,898,268	+		DZA65_RS22650	0.45	-1.2
4,898,268	+		DZA65_RS22650	0.45	-1.6
4,898,268	+		DZA65_RS22650	0.45	+2.2
4,898,269	-		DZA65_RS22650	0.46	-0.1
4,898,325	-		DZA65_RS22650	0.51	+1.2
4,898,325	-		DZA65_RS22650	0.51	-0.4
4,898,325	-		DZA65_RS22650	0.51	+1.2
4,898,325	-		DZA65_RS22650	0.51	+0.6
4,898,364	+		DZA65_RS22650	0.54	+0.1
4,898,427	+		DZA65_RS22650	0.60	-0.4
4,898,469	-		DZA65_RS22650	0.64	-0.9
4,898,540	-		DZA65_RS22650	0.71	-1.4
4,898,551	+		DZA65_RS22650	0.72	-1.6
4,898,585	+		DZA65_RS22650	0.75	-1.7
4,898,585	+		DZA65_RS22650	0.75	-0.4
4,898,609	+		DZA65_RS22650	0.77	-0.1
4,898,609	+		DZA65_RS22650	0.77	-1.2
4,898,609	+		DZA65_RS22650	0.77	-0.1
4,898,610	-		DZA65_RS22650	0.77	-0.7
4,898,610	-		DZA65_RS22650	0.77	+0.9
4,898,648	-		DZA65_RS22650	0.80	-1.8
4,898,648	-		DZA65_RS22650	0.80	+0.6
4,898,676	+		DZA65_RS22650	0.83	+1.2
4,898,676	+		DZA65_RS22650	0.83	+0.6
4,898,677	-		DZA65_RS22650	0.83	+0.6
4,898,677	-		DZA65_RS22650	0.83	-1.1
4,898,677	-		DZA65_RS22650	0.83	-0.4
4,898,680	-		DZA65_RS22650	0.83	-0.9
4,898,722	-		DZA65_RS22650	0.87	-0.1
4,898,859	+				-0.4
4,898,863	-				-0.1
4,898,863	-				-0.9
4,898,909	+				+0.1
4,898,912	-				-1.3
4,898,992	+				-1.6
4,899,002	+				-0.9
4,899,013	-				+0.2
4,899,082	-				-0.1
4,899,087	+				+0.2
4,899,088	-				-0.6
4,899,088	-				-0.8
4,899,088	-				+0.5
4,899,217	+				-0.4
4,899,218	-				-2.4
4,899,322	-		DZA65_RS22655	0.18	-0.4
4,899,442	-		DZA65_RS22655	0.34	+0.2
4,899,442	-		DZA65_RS22655	0.34	-1.6
4,899,442	-		DZA65_RS22655	0.34	+0.6
4,899,442	-		DZA65_RS22655	0.34	+1.2
4,899,442	-		DZA65_RS22655	0.34	+0.6
4,899,445	+		DZA65_RS22655	0.34	-0.7
4,899,445	+		DZA65_RS22655	0.34	-1.4
4,899,446	-		DZA65_RS22655	0.34	+0.1
4,899,532	+		DZA65_RS22655	0.46	-0.4
4,899,544	+		DZA65_RS22655	0.47	+0.1
4,899,544	+		DZA65_RS22655	0.47	-0.4
4,899,544	+		DZA65_RS22655	0.47	-1.5
4,899,545	-		DZA65_RS22655	0.47	+1.2
4,899,545	-		DZA65_RS22655	0.47	-2.2
4,899,545	-		DZA65_RS22655	0.47	-2.4
4,899,545	-		DZA65_RS22655	0.47	+0.8
4,899,566	-		DZA65_RS22655	0.50	-0.4
4,899,566	-		DZA65_RS22655	0.50	-2.0
4,899,585	+		DZA65_RS22655	0.52	+0.4
4,899,586	-		DZA65_RS22655	0.53	-0.9
4,899,586	-		DZA65_RS22655	0.53	+0.1
4,899,586	-				-1.1
4,899,586	-		DZA65_RS22655	0.53	-0.9
4,899,618	+		DZA65_RS22655	0.57	-2.5
4,899,619	-		DZA65_RS22655	0.57	+0.2
4,899,650	+		DZA65_RS22655	0.61	+2.2
4,899,650	+		DZA65_RS22655	0.61	+0.4
4,899,650	+		DZA65_RS22655	0.61	+1.6
4,899,650	+		DZA65_RS22655	0.61	-0.1
4,899,650	+		DZA65_RS22655	0.61	+0.6
4,899,650	+		DZA65_RS22655	0.61	+0.2
4,899,650	+		DZA65_RS22655	0.61	-0.9
4,899,650	+		DZA65_RS22655	0.61	-0.6
4,899,650	+		DZA65_RS22655	0.61	-1.9
4,899,651	-		DZA65_RS22655	0.61	-1.5
4,899,651	-		DZA65_RS22655	0.61	-0.4
4,899,651	-		DZA65_RS22655	0.61	-0.1
4,899,651	-		DZA65_RS22655	0.61	-1.2
4,899,704	+		DZA65_RS22655	0.68	+2.2
4,899,704	+		DZA65_RS22655	0.68	+0.6
4,899,705	-		DZA65_RS22655	0.68	-0.6
4,899,705	-		DZA65_RS22655	0.68	+2.2
4,899,705	-		DZA65_RS22655	0.68	+0.9
4,899,705	-		DZA65_RS22655	0.68	-0.1
4,899,786	+		DZA65_RS22655	0.78	-1.9
4,899,786	+		DZA65_RS22655	0.78	-1.6
4,899,786	+		DZA65_RS22655	0.78	-0.1
4,899,786	+		DZA65_RS22655	0.78	-0.1
4,899,786	+		DZA65_RS22655	0.78	-1.1
4,899,786	+		DZA65_RS22655	0.78	-2.4
4,899,787	-		DZA65_RS22655	0.79	+1.8
4,899,787	-		DZA65_RS22655	0.79	-1.1
4,899,787	-		DZA65_RS22655	0.79	+1.8
4,899,787	-		DZA65_RS22655	0.79	-1.1
4,899,787	-		DZA65_RS22655	0.79	+2.1
4,899,787	-		DZA65_RS22655	0.79	-0.9
4,899,787	-		DZA65_RS22655	0.79	-0.7
4,899,943	+				-0.7
4,899,943	+				-0.1
4,899,943	+				+0.4
4,899,943	+				+1.5
4,899,943	+				-0.4
4,899,943	+				-1.6
4,899,944	-				-0.8
4,899,944	-				-0.6
4,899,944	-				-0.6
4,899,944	-				-1.9
4,899,944	-				-0.4
4,899,944	-				+0.8
4,899,944	-				-0.4
4,899,944	-				-2.5
4,899,951	-				-0.6
4,900,008	+				-0.1
4,900,008	+				-0.4
4,900,008	+				-2.3
4,900,008	+				-0.4
4,900,009	-				-2.0
4,900,009	-				-0.7
4,900,059	-				-0.9
4,900,286	-		DZA65_RS22660	0.30	+2.2
4,900,286	-		DZA65_RS22660	0.30	-0.8
4,900,286	-		DZA65_RS22660	0.30	-0.9
4,900,327	+		DZA65_RS22660	0.34	+1.2
4,900,327	+		DZA65_RS22660	0.34	-0.4
4,900,327	+		DZA65_RS22660	0.34	+0.4
4,900,327	+		DZA65_RS22660	0.34	+2.2
4,900,327	+		DZA65_RS22660	0.34	+0.0
4,900,327	+		DZA65_RS22660	0.34	-1.2
4,900,327	+		DZA65_RS22660	0.34	-2.2
4,900,327	+		DZA65_RS22660	0.34	-1.2
4,900,327	+		DZA65_RS22660	0.34	-1.9
4,900,327	+		DZA65_RS22660	0.34	+0.2
4,900,327	+		DZA65_RS22660	0.34	-1.5
4,900,327	+		DZA65_RS22660	0.34	-1.2
4,900,327	+		DZA65_RS22660	0.34	-0.2
4,900,327	+		DZA65_RS22660	0.34	+0.1
4,900,327	+		DZA65_RS22660	0.34	-2.7
4,900,327	+		DZA65_RS22660	0.34	-0.8
4,900,327	+		DZA65_RS22660	0.34	+1.2
4,900,327	+		DZA65_RS22660	0.34	+1.2
4,900,327	+		DZA65_RS22660	0.34	-0.1
4,900,327	+		DZA65_RS22660	0.34	-0.1
4,900,328	-		DZA65_RS22660	0.34	-0.6
4,900,328	-		DZA65_RS22660	0.34	+0.8
4,900,328	-		DZA65_RS22660	0.34	+1.0
4,900,328	-		DZA65_RS22660	0.34	+0.6
4,900,328	-		DZA65_RS22660	0.34	+1.8
4,900,328	-		DZA65_RS22660	0.34	+0.6
4,900,328	-		DZA65_RS22660	0.34	-0.7
4,900,328	-		DZA65_RS22660	0.34	-0.9
4,900,328	-		DZA65_RS22660	0.34	-0.6
4,900,328	-		DZA65_RS22660	0.34	-0.9
4,900,328	-		DZA65_RS22660	0.34	+1.0
4,900,328	-		DZA65_RS22660	0.34	-0.6
4,900,328	-		DZA65_RS22660	0.34	-0.1
4,900,328	-		DZA65_RS22660	0.34	-1.1
4,900,328	-		DZA65_RS22660	0.34	+1.2
4,900,328	-		DZA65_RS22660	0.34	-0.1
4,900,328	-		DZA65_RS22660	0.34	+0.6
4,900,353	+		DZA65_RS22660	0.36	+0.2
4,900,353	+		DZA65_RS22660	0.36	+0.2
4,900,354	-		DZA65_RS22660	0.37	-1.7
4,900,428	+		DZA65_RS22660	0.44	+0.6
4,900,428	+		DZA65_RS22660	0.44	-0.4
4,900,429	-		DZA65_RS22660	0.44	-0.6
4,900,429	-		DZA65_RS22660	0.44	-2.4
4,900,429	-		DZA65_RS22660	0.44	-0.6
4,900,440	-		DZA65_RS22660	0.45	-0.1
4,900,441	+		DZA65_RS22660	0.45	-0.2
4,900,441	+		DZA65_RS22660	0.45	-1.4
4,900,441	+		DZA65_RS22660	0.45	+2.2
4,900,441	+		DZA65_RS22660	0.45	-1.6
4,900,441	+		DZA65_RS22660	0.45	-0.1
4,900,441	+		DZA65_RS22660	0.45	-0.6
4,900,441	+		DZA65_RS22660	0.45	+0.6
4,900,441	+		DZA65_RS22660	0.45	-1.3
4,900,441	+		DZA65_RS22660	0.45	+0.6
4,900,442	-		DZA65_RS22660	0.46	-1.9
4,900,442	-		DZA65_RS22660	0.46	-2.3
4,900,442	-		DZA65_RS22660	0.46	+0.4
4,900,442	-		DZA65_RS22660	0.46	-1.2
4,900,442	-		DZA65_RS22660	0.46	-1.2
4,900,442	-		DZA65_RS22660	0.46	-0.9
4,900,442	-		DZA65_RS22660	0.46	+1.2
4,900,442	-		DZA65_RS22660	0.46	+0.2
4,900,442	-		DZA65_RS22660	0.46	-0.4
4,900,442	-		DZA65_RS22660	0.46	-0.1
4,900,442	-		DZA65_RS22660	0.46	+1.6
4,900,442	-		DZA65_RS22660	0.46	-1.2
4,900,442	-		DZA65_RS22660	0.46	-1.8
4,900,442	-		DZA65_RS22660	0.46	+0.0
4,900,442	-		DZA65_RS22660	0.46	-1.9
4,900,442	-		DZA65_RS22660	0.46	+0.6
4,900,442	-		DZA65_RS22660	0.46	-2.0
4,900,445	+		DZA65_RS22660	0.46	-0.8
4,900,445	+		DZA65_RS22660	0.46	-1.1
4,900,446	-		DZA65_RS22660	0.46	-0.1
4,900,446	-		DZA65_RS22660	0.46	-0.7
4,900,446	-		DZA65_RS22660	0.46	+0.6
4,900,446	-		DZA65_RS22660	0.46	-1.3
4,900,446	-		DZA65_RS22660	0.46	+0.9
4,900,446	-		DZA65_RS22660	0.46	-1.7
4,900,446	-		DZA65_RS22660	0.46	+0.4
4,900,446	-		DZA65_RS22660	0.46	-1.9
4,900,446	-		DZA65_RS22660	0.46	-1.0
4,900,519	+		DZA65_RS22660	0.53	-1.2
4,900,519	+		DZA65_RS22660	0.53	+0.8
4,900,520	-		DZA65_RS22660	0.53	-0.9
4,900,599	+		DZA65_RS22660	0.62	-0.4
4,900,599	+		DZA65_RS22660	0.62	-0.1
4,900,599	+		DZA65_RS22660	0.62	-1.9
4,900,599	+		DZA65_RS22660	0.62	+1.2
4,900,641	+		DZA65_RS22660	0.66	-0.6
4,900,641	+		DZA65_RS22660	0.66	-1.1
4,900,641	+		DZA65_RS22660	0.66	+0.6
4,900,641	+		DZA65_RS22660	0.66	+1.6
4,900,641	+		DZA65_RS22660	0.66	+0.6
4,900,641	+		DZA65_RS22660	0.66	+1.0
4,900,641	+		DZA65_RS22660	0.66	+0.2
4,900,642	-		DZA65_RS22660	0.66	+0.0
4,900,642	-		DZA65_RS22660	0.66	+0.9
4,900,642	-		DZA65_RS22660	0.66	+0.2
4,900,642	-		DZA65_RS22660	0.66	-1.2
4,900,642	-		DZA65_RS22660	0.66	-0.8
4,900,657	+		DZA65_RS22660	0.67	-0.6
4,900,657	+		DZA65_RS22660	0.67	-0.4
4,900,658	-		DZA65_RS22660	0.68	-0.1
4,900,762	-		DZA65_RS22660	0.78	-2.4
4,900,762	-		DZA65_RS22660	0.78	+0.6