Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22595

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,883,932	+				-1.1
4,883,932	+		DZA65_RS22590	0.35	-0.1
4,883,932	+		DZA65_RS22590	0.35	-0.1
4,883,933	-		DZA65_RS22590	0.35	-1.1
4,883,933	-		DZA65_RS22590	0.35	-0.1
4,883,938	+		DZA65_RS22590	0.35	-2.0
4,883,938	+		DZA65_RS22590	0.35	-0.4
4,883,938	+		DZA65_RS22590	0.35	+0.6
4,883,938	+		DZA65_RS22590	0.35	-1.1
4,883,938	+		DZA65_RS22590	0.35	-1.1
4,883,939	-		DZA65_RS22590	0.35	-0.9
4,883,939	-		DZA65_RS22590	0.35	-1.5
4,883,939	-		DZA65_RS22590	0.35	-0.8
4,884,179	-		DZA65_RS22590	0.53	+2.8
4,884,179	-		DZA65_RS22590	0.53	-1.5
4,884,226	-		DZA65_RS22590	0.57	-0.1
4,884,226	-		DZA65_RS22590	0.57	-0.8
4,884,353	+		DZA65_RS22590	0.66	-1.7
4,884,353	+		DZA65_RS22590	0.66	-1.1
4,884,353	+		DZA65_RS22590	0.66	-0.8
4,884,353	+		DZA65_RS22590	0.66	-0.1
4,884,353	+		DZA65_RS22590	0.66	-0.2
4,884,353	+		DZA65_RS22590	0.66	+0.6
4,884,353	+		DZA65_RS22590	0.66	-1.0
4,884,353	+		DZA65_RS22590	0.66	+0.2
4,884,353	+		DZA65_RS22590	0.66	-2.0
4,884,353	+		DZA65_RS22590	0.66	+0.6
4,884,353	+		DZA65_RS22590	0.66	+0.6
4,884,353	+		DZA65_RS22590	0.66	-0.8
4,884,353	+		DZA65_RS22590	0.66	-0.9
4,884,354	-		DZA65_RS22590	0.66	+0.2
4,884,354	-		DZA65_RS22590	0.66	-1.0
4,884,354	-		DZA65_RS22590	0.66	-0.1
4,884,354	-		DZA65_RS22590	0.66	-0.4
4,884,354	-		DZA65_RS22590	0.66	-0.9
4,884,354	-		DZA65_RS22590	0.66	-0.6
4,884,362	-		DZA65_RS22590	0.67	-0.8
4,884,413	+		DZA65_RS22590	0.71	-0.1
4,884,413	+		DZA65_RS22590	0.71	+0.6
4,884,413	+		DZA65_RS22590	0.71	-1.9
4,884,413	+		DZA65_RS22590	0.71	-0.6
4,884,413	+		DZA65_RS22590	0.71	-0.4
4,884,413	+		DZA65_RS22590	0.71	+0.4
4,884,413	+		DZA65_RS22590	0.71	+1.2
4,884,414	-		DZA65_RS22590	0.71	+0.2
4,884,414	-		DZA65_RS22590	0.71	-0.1
4,884,557	+		DZA65_RS22590	0.81	-0.2
4,884,558	-		DZA65_RS22590	0.81	+0.3
4,884,558	-		DZA65_RS22590	0.81	-1.5
4,884,558	-		DZA65_RS22590	0.81	+1.2
4,884,558	-		DZA65_RS22590	0.81	-0.8
4,884,558	-		DZA65_RS22590	0.81	-0.1
4,884,558	-		DZA65_RS22590	0.81	-0.1
4,884,595	+		DZA65_RS22590	0.84	+1.2
4,884,610	-		DZA65_RS22590	0.85	-1.4
4,884,804	-				+0.2
4,884,902	-				+0.4
4,884,902	-				-0.6
4,884,945	+				-0.6
4,884,945	+				+0.2
4,884,945	+				-0.8
4,884,945	+				-0.4
4,884,945	+				+0.9
4,884,945	+				-0.1
4,884,945	+				-2.5
4,884,946	-				-0.1
4,884,946	-				-0.9
4,884,953	+				+0.6
4,884,954	-				-0.4
4,884,954	-				-2.6
4,884,955	+				-2.4
4,884,955	+				-0.1
4,884,955	+				-0.4
4,884,955	+				-1.4
4,884,955	+				-0.1
4,884,955	+				-2.9
4,884,956	-				+1.2
4,884,956	-				-0.6
4,884,956	-				-0.1
4,885,010	-		DZA65_RS22595	0.15	-0.9
4,885,021	+		DZA65_RS22595	0.16	+0.2
4,885,021	+		DZA65_RS22595	0.16	-0.8
4,885,021	+		DZA65_RS22595	0.16	-2.0
4,885,021	+		DZA65_RS22595	0.16	-0.9
4,885,021	+		DZA65_RS22595	0.16	-1.5
4,885,021	+		DZA65_RS22595	0.16	-0.6
4,885,021	+		DZA65_RS22595	0.16	-0.1
4,885,021	+		DZA65_RS22595	0.16	-0.6
4,885,021	+		DZA65_RS22595	0.16	-1.3
4,885,021	+		DZA65_RS22595	0.16	-2.0
4,885,021	+		DZA65_RS22595	0.16	-3.3
4,885,021	+		DZA65_RS22595	0.16	+1.6
4,885,021	+		DZA65_RS22595	0.16	-0.1
4,885,021	+		DZA65_RS22595	0.16	-2.9
4,885,021	+		DZA65_RS22595	0.16	+0.4
4,885,022	-		DZA65_RS22595	0.16	-1.9
4,885,022	-		DZA65_RS22595	0.16	-2.3
4,885,022	-		DZA65_RS22595	0.16	-0.8
4,885,022	-		DZA65_RS22595	0.16	+1.8
4,885,022	-		DZA65_RS22595	0.16	-2.4
4,885,022	-		DZA65_RS22595	0.16	-1.1
4,885,022	-		DZA65_RS22595	0.16	-1.1
4,885,078	+		DZA65_RS22595	0.24	-1.5
4,885,079	-		DZA65_RS22595	0.24	-0.5
4,885,079	-		DZA65_RS22595	0.24	-0.6
4,885,115	+		DZA65_RS22595	0.29	-0.4
4,885,115	+		DZA65_RS22595	0.29	-2.6
4,885,115	+		DZA65_RS22595	0.29	-0.4
4,885,115	+		DZA65_RS22595	0.29	+2.2
4,885,179	-		DZA65_RS22595	0.38	-0.5
4,885,211	+		DZA65_RS22595	0.42	+0.6
4,885,211	+		DZA65_RS22595	0.42	-2.4
4,885,211	+		DZA65_RS22595	0.42	-1.2
4,885,212	-		DZA65_RS22595	0.42	-2.1
4,885,212	-		DZA65_RS22595	0.42	-0.8
4,885,218	+		DZA65_RS22595	0.43	-1.6
4,885,218	+		DZA65_RS22595	0.43	+1.2
4,885,218	+		DZA65_RS22595	0.43	-1.6
4,885,218	+		DZA65_RS22595	0.43	-0.1
4,885,219	-		DZA65_RS22595	0.43	-0.8
4,885,219	-		DZA65_RS22595	0.43	-1.0
4,885,219	-		DZA65_RS22595	0.43	-0.9
4,885,486	+		DZA65_RS22595	0.79	-2.1
4,885,486	+		DZA65_RS22595	0.79	-0.5
4,885,486	+				-0.9
4,885,486	+				+0.2
4,885,487	-		DZA65_RS22595	0.79	-0.9
4,885,487	-		DZA65_RS22595	0.79	-3.2
4,885,487	-		DZA65_RS22595	0.79	-1.2
4,885,569	+				-1.4
4,885,569	+				-1.1
4,885,569	+				+2.2
4,885,569	+				-1.9
4,885,569	+				+0.2
4,885,569	+				-1.4
4,885,570	-				-3.3
4,885,570	-				-0.1
4,885,570	-				+0.2
4,885,570	-				-2.2
4,885,570	-				-2.3
4,885,570	-				-0.5
4,885,640	+				-1.6
4,885,640	+				+0.6
4,885,640	+				-0.9
4,885,641	-				-1.8
4,885,684	+				-0.4
4,885,736	+				-0.4
4,885,736	+				-0.1
4,885,736	+				+0.6
4,885,763	+				-1.9
4,885,775	-				+1.6
4,885,778	+				-0.4
4,885,778	+				+0.2
4,885,779	-				+0.8
4,885,779	-				-0.8
4,885,797	+				-2.0
4,885,797	+				-0.5
4,885,797	+				-0.2
4,885,797	+				+1.2
4,885,797	+				-0.4
4,885,797	+				-1.9
4,885,798	-				+1.2
4,885,798	-				-1.6
4,885,798	-				+0.6
4,885,798	-				-1.0
4,885,798	-				-1.1
4,885,853	+				-0.4
4,885,853	+				+0.2
4,885,853	+				-1.7
4,885,854	-				-1.4
4,885,854	-				+0.7
4,885,854	-				-1.7
4,885,854	-				-0.1
4,886,053	+		DZA65_RS22600	0.21	-1.9
4,886,053	+		DZA65_RS22600	0.21	-1.6
4,886,053	+		DZA65_RS22600	0.21	-2.0
4,886,054	-		DZA65_RS22600	0.22	-1.8
4,886,097	+		DZA65_RS22600	0.30	-0.8
4,886,097	+		DZA65_RS22600	0.30	-0.1
4,886,097	+		DZA65_RS22600	0.30	-0.8
4,886,097	+		DZA65_RS22600	0.30	-1.1
4,886,097	+		DZA65_RS22600	0.30	-0.8
4,886,097	+		DZA65_RS22600	0.30	-1.9
4,886,098	-		DZA65_RS22600	0.30	-2.3
4,886,098	-		DZA65_RS22600	0.30	-1.0
4,886,185	+		DZA65_RS22600	0.46	-1.9
4,886,185	+		DZA65_RS22600	0.46	-1.2
4,886,185	+		DZA65_RS22600	0.46	-0.1
4,886,185	+		DZA65_RS22600	0.46	+1.2
4,886,185	+		DZA65_RS22600	0.46	+1.2
4,886,185	+		DZA65_RS22600	0.46	-2.1
4,886,185	+		DZA65_RS22600	0.46	-0.8
4,886,186	-		DZA65_RS22600	0.46	+1.1
4,886,186	-		DZA65_RS22600	0.46	+1.2
4,886,186	-		DZA65_RS22600	0.46	-1.6
4,886,186	-		DZA65_RS22600	0.46	-0.7
4,886,186	-		DZA65_RS22600	0.46	-1.4
4,886,186	-		DZA65_RS22600	0.46	-0.6
4,886,186	-		DZA65_RS22600	0.46	+0.6
4,886,186	-		DZA65_RS22600	0.46	+2.8
4,886,186	-		DZA65_RS22600	0.46	+0.0
4,886,188	+		DZA65_RS22600	0.47	+3.2
4,886,189	-		DZA65_RS22600	0.47	-0.8
4,886,189	-		DZA65_RS22600	0.47	-0.1
4,886,208	+		DZA65_RS22600	0.50	-1.4
4,886,208	+		DZA65_RS22600	0.50	-1.2
4,886,208	+		DZA65_RS22600	0.50	-1.7
4,886,208	+		DZA65_RS22600	0.50	-1.7
4,886,209	-		DZA65_RS22600	0.51	-1.1
4,886,209	-		DZA65_RS22600	0.51	-0.2
4,886,209	-		DZA65_RS22600	0.51	+1.4
4,886,241	+		DZA65_RS22600	0.57	-1.4
4,886,241	+		DZA65_RS22600	0.57	+0.1
4,886,241	+		DZA65_RS22600	0.57	-1.7
4,886,241	+		DZA65_RS22600	0.57	-0.6
4,886,241	+		DZA65_RS22600	0.57	-0.7
4,886,242	-		DZA65_RS22600	0.57	+0.1
4,886,242	-		DZA65_RS22600	0.57	-1.6
4,886,242	-		DZA65_RS22600	0.57	+1.2
4,886,308	+		DZA65_RS22600	0.69	-1.6
4,886,308	+		DZA65_RS22600	0.69	-1.1
4,886,309	-		DZA65_RS22600	0.69	+0.7
4,886,309	-		DZA65_RS22600	0.69	-0.9
4,886,309	-		DZA65_RS22600	0.69	-0.8
4,886,334	+		DZA65_RS22600	0.74	+0.2
4,886,334	+		DZA65_RS22600	0.74	+0.6
4,886,338	+		DZA65_RS22600	0.75	-0.8
4,886,339	-		DZA65_RS22600	0.75	-1.4
4,886,339	-		DZA65_RS22600	0.75	-1.2
4,886,343	+		DZA65_RS22600	0.76	-0.5
4,886,344	-		DZA65_RS22600	0.76	-0.4
4,886,344	-		DZA65_RS22600	0.76	-1.0
4,886,516	+				-1.4
4,886,516	+				-2.0
4,886,516	+				-0.2
4,886,517	-				+2.2
4,886,517	-				-0.7
4,886,517	-				-1.6
4,886,517	-				-0.2
4,886,517	-				+1.2
4,886,517	-				-0.9
4,886,517	-				+0.0
4,886,538	-				-0.1