Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20610

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,445,283	+				+1.1
4,445,283	+				-0.9
4,445,283	+				-0.5
4,445,283	+				+1.7
4,445,283	+				+1.1
4,445,283	+				-0.6
4,445,283	+				-2.4
4,445,283	+				+0.9
4,445,283	+				-1.2
4,445,284	-				-1.8
4,445,284	-				-1.0
4,445,284	-				+0.5
4,445,284	-				-1.5
4,445,284	-				-0.7
4,445,284	-				-1.1
4,445,438	+				+1.1
4,445,438	+				-2.1
4,445,438	+				+0.5
4,445,438	+				-1.5
4,445,438	+				-1.3
4,445,438	+				-0.5
4,445,438	+				-1.5
4,445,439	-				+0.5
4,445,439	-				-1.5
4,445,467	-				-0.2
4,445,506	+				+0.1
4,445,507	-				-0.2
4,445,578	-				+0.6
4,445,578	-				-0.5
4,445,596	-				-1.3
4,445,680	+		DZA65_RS20605	0.22	-0.5
4,445,680	+		DZA65_RS20605	0.22	-1.2
4,445,680	+		DZA65_RS20605	0.22	-0.9
4,445,680	+		DZA65_RS20605	0.22	-0.7
4,445,681	-		DZA65_RS20605	0.22	-2.6
4,445,681	-		DZA65_RS20605	0.22	-0.5
4,445,681	-		DZA65_RS20605	0.22	+0.8
4,445,681	-		DZA65_RS20605	0.22	-1.2
4,445,681	-		DZA65_RS20605	0.22	-2.3
4,445,681	-		DZA65_RS20605	0.22	+0.5
4,445,681	-		DZA65_RS20605	0.22	-1.4
4,445,681	-		DZA65_RS20605	0.22	-2.1
4,445,681	-		DZA65_RS20605	0.22	-1.1
4,445,681	-		DZA65_RS20605	0.22	-1.9
4,445,681	-		DZA65_RS20605	0.22	+1.1
4,445,785	+		DZA65_RS20605	0.40	-1.3
4,445,785	+		DZA65_RS20605	0.40	+0.1
4,445,785	+		DZA65_RS20605	0.40	-0.3
4,445,785	+		DZA65_RS20605	0.40	-3.1
4,445,786	-		DZA65_RS20605	0.40	-1.1
4,445,786	-		DZA65_RS20605	0.40	-1.3
4,445,786	-		DZA65_RS20605	0.40	-2.8
4,445,786	-		DZA65_RS20605	0.40	-2.3
4,445,866	+		DZA65_RS20605	0.54	-0.7
4,445,866	+		DZA65_RS20605	0.54	-1.5
4,445,866	+		DZA65_RS20605	0.54	-3.8
4,445,866	+		DZA65_RS20605	0.54	-0.5
4,445,867	-		DZA65_RS20605	0.54	-0.6
4,445,867	-		DZA65_RS20605	0.54	-0.9
4,445,867	-		DZA65_RS20605	0.54	-0.2
4,445,875	+		DZA65_RS20605	0.55	-0.9
4,445,876	-		DZA65_RS20605	0.56	-2.0
4,445,887	+		DZA65_RS20605	0.57	-0.9
4,445,887	+		DZA65_RS20605	0.57	-0.7
4,445,887	+		DZA65_RS20605	0.57	-1.3
4,445,887	+		DZA65_RS20605	0.57	-0.2
4,445,887	+		DZA65_RS20605	0.57	+4.1
4,445,887	+		DZA65_RS20605	0.57	-0.9
4,445,887	+		DZA65_RS20605	0.57	-0.1
4,445,887	+		DZA65_RS20605	0.57	-0.9
4,445,888	-		DZA65_RS20605	0.58	-0.7
4,445,888	-		DZA65_RS20605	0.58	-0.9
4,445,888	-		DZA65_RS20605	0.58	+0.1
4,445,888	-		DZA65_RS20605	0.58	-0.7
4,445,888	-		DZA65_RS20605	0.58	-1.5
4,445,888	-		DZA65_RS20605	0.58	+1.1
4,445,888	-		DZA65_RS20605	0.58	-2.6
4,445,888	-		DZA65_RS20605	0.58	-1.5
4,445,888	-		DZA65_RS20605	0.58	+0.5
4,445,924	+		DZA65_RS20605	0.64	-0.3
4,445,924	+		DZA65_RS20605	0.64	-0.9
4,445,924	+		DZA65_RS20605	0.64	-2.1
4,445,924	+		DZA65_RS20605	0.64	+0.5
4,445,924	+		DZA65_RS20605	0.64	-0.9
4,445,924	+		DZA65_RS20605	0.64	-1.9
4,445,925	-		DZA65_RS20605	0.64	+0.8
4,445,925	-		DZA65_RS20605	0.64	-0.6
4,445,933	+		DZA65_RS20605	0.65	-1.7
4,445,934	-		DZA65_RS20605	0.65	-0.1
4,445,934	-		DZA65_RS20605	0.65	+1.1
4,446,035	+		DZA65_RS20605	0.83	-2.3
4,446,035	+		DZA65_RS20605	0.83	+0.8
4,446,036	-		DZA65_RS20605	0.83	-1.1
4,446,073	+		DZA65_RS20605	0.89	+1.1
4,446,073	+		DZA65_RS20605	0.89	-0.5
4,446,073	+		DZA65_RS20605	0.89	-2.2
4,446,074	-		DZA65_RS20605	0.89	-1.2
4,446,074	-		DZA65_RS20605	0.89	+0.5
4,446,074	-		DZA65_RS20605	0.89	+1.1
4,446,074	-		DZA65_RS20605	0.89	-2.2
4,446,087	+				-1.6
4,446,087	+				-2.6
4,446,088	-				-0.5
4,446,088	-				-2.2
4,446,088	-				-1.1
4,446,091	+				-0.5
4,446,091	+				-1.2
4,446,091	+				+0.1
4,446,091	+				+1.1
4,446,091	+				+2.1
4,446,091	+				+1.4
4,446,091	+				-2.4
4,446,091	+				+0.5
4,446,091	+				+0.5
4,446,091	+				-0.8
4,446,091	+				-1.6
4,446,091	+				-0.7
4,446,091	+				+0.1
4,446,091	+				+0.1
4,446,091	+				+0.5
4,446,091	+				+1.2
4,446,092	-				-1.6
4,446,092	-				-0.2
4,446,092	-				+2.1
4,446,092	-				-3.0
4,446,092	-				-1.6
4,446,098	+				-1.1
4,446,099	-				+0.3
4,446,127	+				+0.5
4,446,128	-				-3.1
4,446,128	-				+0.5
4,446,138	+				-1.2
4,446,138	+				-2.1
4,446,138	+				-3.2
4,446,138	+				-1.2
4,446,138	+				+1.1
4,446,138	+				-1.1
4,446,139	-				-0.9
4,446,139	-				-1.1
4,446,139	-				+0.5
4,446,139	-				-1.2
4,446,139	-				-0.6
4,446,145	+				-1.5
4,446,146	-				-0.7
4,446,146	-				-0.3
4,446,196	+				-0.2
4,446,196	+				-1.1
4,446,196	+				-0.8
4,446,196	+				-1.3
4,446,196	+				+1.1
4,446,196	+				-0.7
4,446,197	-				-0.9
4,446,197	-				-0.9
4,446,197	-				-1.2
4,446,197	-				-0.3
4,446,197	-				-1.7
4,446,197	-				+0.1
4,446,197	-				+1.1
4,446,197	-				+1.7
4,446,238	+				-0.2
4,446,256	-				-0.5
4,446,434	-				-0.5
4,446,480	+				-0.9
4,446,480	+				-1.1
4,446,480	+				-0.2
4,446,480	+				+0.7
4,446,480	+				-1.6
4,446,480	+				-0.6
4,446,480	+				-0.9
4,446,480	+				-1.1
4,446,480	+				-1.3
4,446,480	+				-0.2
4,446,481	-				-2.1
4,446,481	-				-1.1
4,446,481	-				+0.9
4,446,481	-				-2.3
4,446,517	+				-2.2
4,446,575	+				-0.8
4,446,659	+				-2.1
4,446,659	+				-0.5
4,446,659	+				-3.8
4,446,659	+				-0.5
4,446,659	+				+0.5
4,446,660	-				-2.8
4,446,660	-				+0.8
4,446,660	-				-2.1
4,446,660	-				+2.1
4,446,660	-				+1.4
4,446,660	-				-1.1
4,446,660	-				-0.9
4,446,660	-				-0.5
4,446,906	-		DZA65_RS20615	0.22	+1.1
4,446,906	-		DZA65_RS20615	0.22	+0.7
4,446,911	+		DZA65_RS20615	0.22	+0.1
4,446,911	+		DZA65_RS20615	0.22	-0.7
4,446,911	+		DZA65_RS20615	0.22	+0.5
4,446,911	+		DZA65_RS20615	0.22	+0.1
4,446,911	+		DZA65_RS20615	0.22	-0.1
4,446,911	+		DZA65_RS20615	0.22	+0.1
4,446,911	+		DZA65_RS20615	0.22	-0.7
4,446,912	-				+0.5
4,446,912	-		DZA65_RS20615	0.22	-1.7
4,446,912	-		DZA65_RS20615	0.22	-0.7
4,446,912	-		DZA65_RS20615	0.22	-0.2
4,446,912	-		DZA65_RS20615	0.22	-0.5
4,446,912	-		DZA65_RS20615	0.22	+1.1
4,446,912	-		DZA65_RS20615	0.22	-1.3
4,446,979	+		DZA65_RS20615	0.26	+0.5
4,446,979	+		DZA65_RS20615	0.26	-1.2
4,446,982	+		DZA65_RS20615	0.26	-1.2
4,446,982	+		DZA65_RS20615	0.26	-1.0
4,446,982	+		DZA65_RS20615	0.26	-0.2
4,446,982	+		DZA65_RS20615	0.26	-1.9
4,446,982	+		DZA65_RS20615	0.26	-1.5
4,446,982	+		DZA65_RS20615	0.26	+0.2
4,446,982	+		DZA65_RS20615	0.26	-1.4
4,446,983	-		DZA65_RS20615	0.26	-0.2
4,446,983	-		DZA65_RS20615	0.26	-0.5
4,446,991	+		DZA65_RS20615	0.26	-1.7
4,447,055	+		DZA65_RS20615	0.30	+0.0
4,447,055	+		DZA65_RS20615	0.30	+1.1
4,447,055	+		DZA65_RS20615	0.30	-0.9
4,447,055	+		DZA65_RS20615	0.30	+0.1
4,447,055	+		DZA65_RS20615	0.30	-1.2
4,447,055	+		DZA65_RS20615	0.30	-2.3
4,447,055	+		DZA65_RS20615	0.30	-2.3
4,447,056	-		DZA65_RS20615	0.30	-1.4
4,447,056	-		DZA65_RS20615	0.30	-1.2
4,447,138	+		DZA65_RS20615	0.34	-1.3
4,447,138	+		DZA65_RS20615	0.34	-1.4
4,447,138	+		DZA65_RS20615	0.34	-0.5
4,447,139	-		DZA65_RS20615	0.34	-0.2
4,447,139	-		DZA65_RS20615	0.34	+1.7
4,447,139	-		DZA65_RS20615	0.34	-1.3
4,447,139	-		DZA65_RS20615	0.34	-2.2
4,447,187	+		DZA65_RS20615	0.37	+0.1
4,447,187	+		DZA65_RS20615	0.37	-0.2
4,447,187	+		DZA65_RS20615	0.37	-1.2
4,447,188	-		DZA65_RS20615	0.37	+0.1
4,447,188	-				-0.2
4,447,188	-		DZA65_RS20615	0.37	+1.1
4,447,188	-		DZA65_RS20615	0.37	-0.7
4,447,376	-		DZA65_RS20615	0.48	-0.7
4,447,376	-		DZA65_RS20615	0.48	+3.1
4,447,376	-		DZA65_RS20615	0.48	-1.0
4,447,393	+		DZA65_RS20615	0.49	-2.1
4,447,393	+		DZA65_RS20615	0.49	+1.1
4,447,394	-		DZA65_RS20615	0.49	-0.2
4,447,394	-		DZA65_RS20615	0.49	-0.7
4,447,394	-		DZA65_RS20615	0.49	-0.8
4,447,400	+		DZA65_RS20615	0.49	+0.1
4,447,400	+		DZA65_RS20615	0.49	-1.3
4,447,401	-		DZA65_RS20615	0.49	+1.1
4,447,401	-		DZA65_RS20615	0.49	-0.2
4,447,401	-		DZA65_RS20615	0.49	+0.1
4,447,401	-		DZA65_RS20615	0.49	-0.7
4,447,401	-		DZA65_RS20615	0.49	-2.8
4,447,401	-		DZA65_RS20615	0.49	-2.3