Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18815

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,053,310	+				-0.5
4,053,391	+				-1.1
4,053,391	+				+0.8
4,053,398	+				+1.1
4,053,430	+				-1.6
4,053,430	+				+0.8
4,053,430	+				-1.3
4,053,430	+				-1.2
4,053,430	+				-0.2
4,053,430	+				-3.3
4,053,430	+				+0.7
4,053,430	+				-2.1
4,053,430	+				-0.2
4,053,430	+				-1.1
4,053,430	+				+0.5
4,053,430	+				-0.8
4,053,430	+				-2.5
4,053,430	+				-0.4
4,053,430	+				-1.2
4,053,430	+				+0.3
4,053,430	+				-1.2
4,053,430	+				+0.8
4,053,430	+				-0.3
4,053,430	+				+0.1
4,053,430	+				+1.1
4,053,430	+				-0.2
4,053,430	+				+0.5
4,053,430	+				-1.5
4,053,430	+				+2.1
4,053,430	+				-2.4
4,053,430	+				+0.1
4,053,430	+				+0.1
4,053,430	+				+1.1
4,053,430	+				+1.4
4,053,430	+				-1.8
4,053,430	+				+1.8
4,053,430	+				-0.7
4,053,430	+				-1.9
4,053,430	+				-1.3
4,053,430	+				-0.5
4,053,430	+				+0.1
4,053,430	+				-0.5
4,053,430	+				+0.3
4,053,431	-				-0.2
4,053,431	-				-1.6
4,053,431	-				+1.1
4,053,431	-				+0.7
4,053,431	-				-1.2
4,053,431	-				-1.8
4,053,431	-				-1.2
4,053,431	-				+1.1
4,053,431	-				-0.5
4,053,431	-				+1.3
4,053,431	-				-1.5
4,053,431	-				-0.2
4,053,431	-				-1.1
4,053,431	-				-0.9
4,053,431	-				-0.5
4,053,431	-				+0.3
4,053,431	-				-0.9
4,053,431	-				-0.7
4,053,431	-				+0.1
4,053,431	-				+4.1
4,053,431	-				-0.7
4,053,431	-				-0.2
4,053,431	-				+2.7
4,053,431	-				+2.1
4,053,431	-				+0.5
4,053,431	-				-2.8
4,053,431	-				-0.8
4,053,431	-				-2.1
4,053,431	-				+0.4
4,053,431	-				-0.4
4,053,431	-				+0.5
4,053,431	-				-1.1
4,053,431	-				+0.1
4,053,431	-				-1.7
4,053,431	-				+2.1
4,053,431	-				+0.5
4,053,431	-				-0.9
4,053,436	+				+1.7
4,053,436	+				-0.2
4,053,436	+				-1.2
4,053,436	+				-1.7
4,053,436	+				-0.2
4,053,436	+				-0.8
4,053,436	+				-0.5
4,053,436	+				+0.5
4,053,436	+				-1.0
4,053,436	+				-0.5
4,053,437	-				-0.7
4,053,437	-				-2.3
4,053,437	-				-1.5
4,053,437	-				-0.2
4,053,437	-				-0.3
4,053,437	-				-0.7
4,053,437	-				+0.1
4,053,437	-				+1.5
4,053,437	-				-0.9
4,053,437	-				-0.2
4,053,437	-				-0.7
4,053,437	-				+0.1
4,053,437	-				-0.2
4,053,437	-				-1.1
4,053,437	-				+1.1
4,053,437	-				+2.6
4,053,437	-				+0.1
4,053,438	+				+0.1
4,053,475	+				-1.3
4,053,492	+				+0.5
4,053,492	+				-1.3
4,053,492	+				+0.5
4,053,492	+				-1.6
4,053,492	+				+0.5
4,053,492	+				-2.7
4,053,492	+				-0.2
4,053,493	-				+1.5
4,053,493	-				-0.5
4,053,493	-				+0.1
4,053,493	-				+0.5
4,053,493	-				-1.9
4,053,496	+				-0.8
4,053,496	+				-1.3
4,053,496	+				-1.9
4,053,496	+				-1.5
4,053,497	-				-0.9
4,053,497	-				+0.1
4,053,497	-				-1.1
4,053,525	+				+0.9
4,053,525	+				+0.5
4,053,526	-				+0.5
4,053,526	-				-0.2
4,053,526	-				-3.2
4,053,526	-				-0.3
4,053,526	-				+2.1
4,053,786	+				-0.2
4,053,786	+				-0.7
4,053,787	-				-0.2
4,053,787	-				+1.5
4,053,795	-				+1.5
4,053,795	-				-0.3
4,053,804	-				-0.5
4,053,810	-				-1.1
4,053,810	-				-1.6
4,053,960	+		DZA65_RS18810	0.39	-0.9
4,053,960	+		DZA65_RS18810	0.39	-0.1
4,053,961	-		DZA65_RS18810	0.39	-1.2
4,053,961	-		DZA65_RS18810	0.39	-1.3
4,053,962	-		DZA65_RS18810	0.39	-0.4
4,053,971	+		DZA65_RS18810	0.41	+0.3
4,053,972	-		DZA65_RS18810	0.41	-0.5
4,054,135	-		DZA65_RS18810	0.80	-0.3
4,054,135	-		DZA65_RS18810	0.80	+0.1
4,054,135	-		DZA65_RS18810	0.80	+1.7
4,054,135	-		DZA65_RS18810	0.80	+1.1
4,054,182	+				+0.1
4,054,182	+				-1.1
4,054,182	+				-0.1
4,054,183	-				+1.7
4,054,183	-				-1.2
4,054,183	-				-0.8
4,054,183	-				-0.7
4,054,183	-				-0.1
4,054,292	+				-2.1
4,054,305	-				-2.4
4,054,613	+				+0.1
4,054,626	+				-2.1
4,054,641	+				+2.1
4,054,642	-				-0.7
4,054,674	-				-0.2
4,054,726	+		DZA65_RS18815	0.11	-1.4
4,054,759	-		DZA65_RS18815	0.11	-0.6
4,054,759	-		DZA65_RS18815	0.11	-2.4
4,054,759	-		DZA65_RS18815	0.11	-1.1
4,054,759	-		DZA65_RS18815	0.11	-0.9
4,054,759	-		DZA65_RS18815	0.11	-1.7
4,054,854	+		DZA65_RS18815	0.14	-2.8
4,054,939	+		DZA65_RS18815	0.16	-0.2
4,054,939	+		DZA65_RS18815	0.16	-2.0
4,054,939	+		DZA65_RS18815	0.16	-0.2
4,054,939	+		DZA65_RS18815	0.16	-0.2
4,054,939	+		DZA65_RS18815	0.16	-0.7
4,054,939	+		DZA65_RS18815	0.16	+0.1
4,054,940	-		DZA65_RS18815	0.16	-1.2
4,054,940	-		DZA65_RS18815	0.16	-1.2
4,054,940	-		DZA65_RS18815	0.16	-2.1
4,054,940	-		DZA65_RS18815	0.16	-0.2
4,054,940	-		DZA65_RS18815	0.16	+0.5
4,054,940	-		DZA65_RS18815	0.16	-1.1
4,054,940	-		DZA65_RS18815	0.16	-0.6
4,055,052	+		DZA65_RS18815	0.19	-2.0
4,055,052	+		DZA65_RS18815	0.19	+0.4
4,055,053	-		DZA65_RS18815	0.19	+0.1
4,055,065	+		DZA65_RS18815	0.19	-2.9
4,055,066	-		DZA65_RS18815	0.19	+0.5
4,055,066	-		DZA65_RS18815	0.19	-0.1
4,055,071	+		DZA65_RS18815	0.19	-0.6
4,055,071	+		DZA65_RS18815	0.19	-0.1
4,055,071	+		DZA65_RS18815	0.19	+0.3
4,055,071	+		DZA65_RS18815	0.19	+0.7
4,055,071	+		DZA65_RS18815	0.19	+1.1
4,055,071	+		DZA65_RS18815	0.19	-2.4
4,055,071	+		DZA65_RS18815	0.19	+1.7
4,055,071	+		DZA65_RS18815	0.19	-0.5
4,055,071	+		DZA65_RS18815	0.19	-0.2
4,055,071	+		DZA65_RS18815	0.19	-1.3
4,055,072	-		DZA65_RS18815	0.19	-2.3
4,055,072	-		DZA65_RS18815	0.19	-1.0
4,055,072	-		DZA65_RS18815	0.19	+0.1
4,055,072	-		DZA65_RS18815	0.19	-2.5
4,055,072	-		DZA65_RS18815	0.19	-1.2
4,055,072	-		DZA65_RS18815	0.19	+1.3
4,055,127	+		DZA65_RS18815	0.20	-1.3
4,055,128	-		DZA65_RS18815	0.20	-0.3
4,055,128	-		DZA65_RS18815	0.20	-1.2
4,055,128	-		DZA65_RS18815	0.20	-0.7
4,055,130	+		DZA65_RS18815	0.20	+0.3
4,055,131	-		DZA65_RS18815	0.20	-0.2
4,055,334	+		DZA65_RS18815	0.25	+0.1
4,055,334	+		DZA65_RS18815	0.25	-0.5
4,055,334	+		DZA65_RS18815	0.25	+0.1
4,055,335	-		DZA65_RS18815	0.25	-2.8
4,055,335	-		DZA65_RS18815	0.25	+1.9
4,055,335	-				+0.1
4,055,335	-		DZA65_RS18815	0.25	-0.3
4,055,541	+		DZA65_RS18815	0.30	-0.5
4,055,541	+		DZA65_RS18815	0.30	+0.8
4,055,541	+		DZA65_RS18815	0.30	+1.5
4,055,541	+		DZA65_RS18815	0.30	-0.7
4,055,541	+		DZA65_RS18815	0.30	-0.2
4,055,542	-		DZA65_RS18815	0.30	-0.5
4,055,542	-		DZA65_RS18815	0.30	+1.8
4,055,542	-		DZA65_RS18815	0.30	+1.3
4,055,542	-		DZA65_RS18815	0.30	+0.8
4,055,823	+		DZA65_RS18815	0.37	-1.3
4,055,823	+		DZA65_RS18815	0.37	+0.1
4,055,823	+		DZA65_RS18815	0.37	-0.4
4,055,823	+		DZA65_RS18815	0.37	+0.3
4,055,824	-		DZA65_RS18815	0.37	-1.2
4,055,824	-		DZA65_RS18815	0.37	-1.3
4,055,829	+		DZA65_RS18815	0.37	-1.3
4,055,829	+		DZA65_RS18815	0.37	-2.1
4,055,830	-		DZA65_RS18815	0.37	-1.6
4,055,830	-		DZA65_RS18815	0.37	-0.9
4,055,830	-		DZA65_RS18815	0.37	-0.2
4,056,065	+		DZA65_RS18815	0.43	-0.1
4,056,065	+		DZA65_RS18815	0.43	-2.3
4,056,066	-		DZA65_RS18815	0.43	-1.8
4,056,116	+		DZA65_RS18815	0.44	-1.6
4,056,367	+		DZA65_RS18815	0.50	-2.5
4,056,367	+		DZA65_RS18815	0.50	-1.7
4,056,367	+		DZA65_RS18815	0.50	-0.5
4,056,367	+		DZA65_RS18815	0.50	-1.1
4,056,368	-		DZA65_RS18815	0.50	-0.5
4,056,368	-		DZA65_RS18815	0.50	-2.0
4,056,408	+		DZA65_RS18815	0.51	-0.5
4,056,409	-		DZA65_RS18815	0.51	+0.3
4,056,549	+		DZA65_RS18815	0.55	-1.1
4,056,549	+		DZA65_RS18815	0.55	-1.8
4,056,558	+		DZA65_RS18815	0.55	+0.7
4,056,571	-		DZA65_RS18815	0.55	-1.3
4,056,599	-		DZA65_RS18815	0.56	+2.1
4,056,599	-		DZA65_RS18815	0.56	-0.3
4,056,599	-		DZA65_RS18815	0.56	-0.2
4,056,912	+		DZA65_RS18815	0.64	-0.3
4,056,912	+		DZA65_RS18815	0.64	-0.5
4,057,098	+		DZA65_RS18815	0.68	+0.1
4,057,098	+		DZA65_RS18815	0.68	-1.5
4,057,098	+		DZA65_RS18815	0.68	-1.1
4,057,099	-		DZA65_RS18815	0.68	-2.0
4,057,099	-		DZA65_RS18815	0.68	-1.1
4,057,099	-		DZA65_RS18815	0.68	-1.9
4,057,129	+		DZA65_RS18815	0.69	-2.7
4,057,290	+		DZA65_RS18815	0.73	+1.1
4,057,291	-		DZA65_RS18815	0.73	-0.2
4,057,291	-		DZA65_RS18815	0.73	+0.5
4,057,291	-		DZA65_RS18815	0.73	-0.6
4,057,298	+		DZA65_RS18815	0.73	-1.5
4,057,298	+		DZA65_RS18815	0.73	-0.5
4,057,299	-		DZA65_RS18815	0.73	-0.5
4,057,299	-		DZA65_RS18815	0.73	+0.1
4,057,375	-		DZA65_RS18815	0.75	-0.7
4,057,413	+		DZA65_RS18815	0.76	+0.3
4,057,414	-		DZA65_RS18815	0.76	-0.2
4,057,671	+		DZA65_RS18815	0.82	+0.5
4,057,672	-		DZA65_RS18815	0.82	-2.1
4,057,855	+		DZA65_RS18815	0.87	-0.5
4,057,917	+		DZA65_RS18815	0.88	+2.1
4,057,941	-		DZA65_RS18815	0.89	-1.2
4,058,000	+				+0.1
4,058,011	-				+1.1
4,058,011	-				+1.1
4,058,011	-				-0.5
4,058,103	+				-0.4
4,058,103	+				-2.1
4,058,288	+				-2.7
4,058,289	-				+0.6
4,058,289	-				+0.5
4,058,289	-				+0.5
4,058,289	-				-0.5
4,058,291	+				+2.7
4,058,501	+				-0.3
4,058,501	+				-0.9
4,058,501	+				+0.3
4,058,501	+				-1.1
4,058,501	+				-0.5
4,058,501	+				-1.2
4,058,501	+				-2.0
4,058,501	+				-0.7
4,058,501	+				+0.1
4,058,501	+				+1.3
4,058,501	+				+0.1
4,058,501	+				-2.3
4,058,501	+				-0.2
4,058,502	-				-0.5
4,058,502	-				-0.7
4,058,502	-				-0.5
4,058,502	-				+0.5
4,058,502	-				+0.1
4,058,502	-				+1.4
4,058,502	-				+0.1
4,058,502	-				-2.4
4,058,502	-				+1.5
4,058,541	+				-0.7
4,058,541	+				-0.9
4,058,604	-		DZA65_RS18820	0.12	+0.5
4,059,059	+		DZA65_RS18820	0.67	+1.1
4,059,059	+		DZA65_RS18820	0.67	-2.7
4,059,059	+		DZA65_RS18820	0.67	-0.2
4,059,060	-		DZA65_RS18820	0.67	-1.2
4,059,060	-		DZA65_RS18820	0.67	-1.3
4,059,060	-		DZA65_RS18820	0.67	+0.0
4,059,129	+		DZA65_RS18820	0.75	-1.0
4,059,129	+		DZA65_RS18820	0.75	-0.5
4,059,130	-		DZA65_RS18820	0.75	+0.7
4,059,130	-		DZA65_RS18820	0.75	+1.3
4,059,132	+		DZA65_RS18820	0.75	-0.3
4,059,132	+		DZA65_RS18820	0.75	+0.1
4,059,132	+		DZA65_RS18820	0.75	-1.1
4,059,133	-		DZA65_RS18820	0.75	-0.1
4,059,133	-		DZA65_RS18820	0.75	-1.0
4,059,133	-		DZA65_RS18820	0.75	-0.5
4,059,133	-		DZA65_RS18820	0.75	-0.9
4,059,133	-		DZA65_RS18820	0.75	-0.9
4,059,133	-		DZA65_RS18820	0.75	-2.0
4,059,133	-		DZA65_RS18820	0.75	-0.9
4,059,268	-				-0.7
4,059,297	+				-1.6
4,059,297	+				-0.7
4,059,297	+				-1.8
4,059,298	-				-0.3
4,059,298	-				+0.1
4,059,298	-				+0.1
4,059,298	-				-0.2
4,059,298	-				-0.5
4,059,298	-				+0.2
4,059,356	-				+0.1