Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17895

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,851,706	+				-0.3
3,851,715	-				+1.7
3,851,718	-				-0.3
3,851,753	+				-0.8
3,851,754	-				-3.4
3,851,754	-				-1.2
3,851,763	+				-0.2
3,851,763	+				+1.0
3,851,763	+				-1.4
3,851,763	+				-1.4
3,851,763	+				+0.0
3,851,763	+				-0.6
3,851,763	+				-0.3
3,851,763	+				-1.0
3,851,763	+				-1.3
3,851,763	+				-0.3
3,851,763	+				-1.6
3,851,763	+				+1.0
3,851,764	-				+1.0
3,851,764	-				-0.3
3,851,764	-				-1.4
3,851,764	-				-0.3
3,851,764	-				-1.2
3,851,764	-				-0.3
3,851,764	-				+1.0
3,851,764	-				-2.2
3,851,764	-				-0.9
3,851,764	-				-2.1
3,851,764	-				-1.3
3,851,882	+				-0.6
3,851,906	-				+2.0
3,851,923	-				+0.4
3,852,014	+				-0.3
3,852,014	+				-1.8
3,852,123	+		DZA65_RS17890	0.17	-0.6
3,852,123	+		DZA65_RS17890	0.17	-2.0
3,852,123	+		DZA65_RS17890	0.17	+0.4
3,852,176	+		DZA65_RS17890	0.25	-1.2
3,852,176	+		DZA65_RS17890	0.25	-0.6
3,852,176	+		DZA65_RS17890	0.25	-1.4
3,852,176	+		DZA65_RS17890	0.25	-0.3
3,852,176	+		DZA65_RS17890	0.25	-2.7
3,852,177	-		DZA65_RS17890	0.25	-0.9
3,852,177	-		DZA65_RS17890	0.25	-0.6
3,852,214	+		DZA65_RS17890	0.31	+1.8
3,852,214	+		DZA65_RS17890	0.31	-1.7
3,852,214	+		DZA65_RS17890	0.31	+1.0
3,852,214	+		DZA65_RS17890	0.31	-0.3
3,852,214	+		DZA65_RS17890	0.31	+0.0
3,852,214	+				+0.0
3,852,215	-		DZA65_RS17890	0.31	+0.4
3,852,215	-		DZA65_RS17890	0.31	+1.0
3,852,215	-		DZA65_RS17890	0.31	+1.0
3,852,229	-		DZA65_RS17890	0.33	-1.1
3,852,276	-		DZA65_RS17890	0.40	-1.3
3,852,433	+		DZA65_RS17890	0.63	+1.0
3,852,440	+		DZA65_RS17890	0.64	-0.5
3,852,459	+		DZA65_RS17890	0.67	+0.4
3,852,488	+		DZA65_RS17890	0.71	+1.0
3,852,488	+		DZA65_RS17890	0.71	-1.2
3,852,488	+		DZA65_RS17890	0.71	-0.3
3,852,489	-		DZA65_RS17890	0.71	-1.1
3,852,502	+		DZA65_RS17890	0.73	+0.4
3,852,667	+				+0.6
3,852,689	-				+0.3
3,852,689	-				-0.5
3,852,696	+				-1.0
3,852,699	+				-2.4
3,852,743	+		DZA65_RS17895	0.18	+1.2
3,852,744	-		DZA65_RS17895	0.18	+0.3
3,852,957	+		DZA65_RS17895	0.80	-0.8
3,852,957	+		DZA65_RS17895	0.80	+0.4
3,852,958	-		DZA65_RS17895	0.80	-0.1
3,852,986	+		DZA65_RS17895	0.89	-1.2
3,852,996	+				-2.3
3,852,997	-				-1.3
3,853,000	+				-1.4
3,853,000	+				-0.2
3,853,000	+				+1.0
3,853,000	+				+0.4
3,853,001	-				-0.6
3,853,048	+				-0.2
3,853,048	+				+0.4
3,853,049	-				+1.0
3,853,049	-				-1.2
3,853,049	-				-0.2
3,853,049	-				-0.3
3,853,062	-				-0.7
3,853,064	+				+2.0
3,853,064	+				-1.0
3,853,064	+				-1.4
3,853,064	+				-1.4
3,853,065	-				+0.1
3,853,065	-				-0.7
3,853,081	+				-0.4
3,853,082	-				-0.6
3,853,082	-				-1.7
3,853,094	+				-1.1
3,853,094	+				-1.4
3,853,094	+				+1.0
3,853,094	+				+0.2
3,853,094	+				-2.2
3,853,095	-				+0.0
3,853,095	-				-1.3
3,853,095	-				+1.2
3,853,095	-				-2.0
3,853,113	+				-2.3
3,853,113	+				-2.3
3,853,113	+				+0.6
3,853,113	+				+0.7
3,853,113	+				-1.3
3,853,113	+				+1.4
3,853,113	+				-0.6
3,853,113	+				+1.0
3,853,120	+				-2.4
3,853,121	-				-0.8
3,853,121	-				+0.9
3,853,142	+				+2.6
3,853,146	+				+1.0
3,853,146	+				-1.3
3,853,150	+				+1.0
3,853,150	+				-1.4
3,853,150	+				-0.3
3,853,166	+				+0.2
3,853,167	-				-1.2
3,853,184	+				+0.1
3,853,184	+				+0.4
3,853,185	-				+1.0
3,853,197	+				+0.5
3,853,197	+				-0.6
3,853,198	-				-1.6
3,853,236	+				-0.2
3,853,236	+				-2.0
3,853,236	+				-0.3
3,853,237	-				-0.3
3,853,292	+		DZA65_RS17900	0.18	+0.1
3,853,293	-		DZA65_RS17900	0.19	+1.5
3,853,302	+		DZA65_RS17900	0.20	+0.1
3,853,302	+		DZA65_RS17900	0.20	-3.6
3,853,302	+		DZA65_RS17900	0.20	-1.4
3,853,302	+		DZA65_RS17900	0.20	-0.3
3,853,302	+		DZA65_RS17900	0.20	-1.0
3,853,303	-		DZA65_RS17900	0.20	-1.0
3,853,303	-		DZA65_RS17900	0.20	-3.1
3,853,303	-		DZA65_RS17900	0.20	-3.2
3,853,316	+		DZA65_RS17900	0.23	-0.6
3,853,316	+		DZA65_RS17900	0.23	-0.2
3,853,317	-		DZA65_RS17900	0.23	+0.1
3,853,317	-		DZA65_RS17900	0.23	+0.8
3,853,335	+		DZA65_RS17900	0.27	+3.8
3,853,335	+		DZA65_RS17900	0.27	-1.0
3,853,335	+		DZA65_RS17900	0.27	-1.2
3,853,335	+		DZA65_RS17900	0.27	-2.8
3,853,336	-		DZA65_RS17900	0.27	+2.0
3,853,336	-		DZA65_RS17900	0.27	-0.3
3,853,383	+		DZA65_RS17900	0.36	-1.3
3,853,383	+		DZA65_RS17900	0.36	-0.2
3,853,384	-		DZA65_RS17900	0.36	-0.3
3,853,405	+		DZA65_RS17900	0.40	-1.2
3,853,406	-		DZA65_RS17900	0.41	-0.2
3,853,537	+		DZA65_RS17900	0.66	-1.2
3,853,537	+		DZA65_RS17900	0.66	-0.3
3,853,537	+		DZA65_RS17900	0.66	-0.2
3,853,537	+		DZA65_RS17900	0.66	-0.6
3,853,538	-		DZA65_RS17900	0.66	-0.4
3,853,538	-		DZA65_RS17900	0.66	-1.1
3,853,538	-		DZA65_RS17900	0.66	+0.4
3,853,543	+		DZA65_RS17900	0.67	+0.1
3,853,543	+		DZA65_RS17900	0.67	+0.2
3,853,543	+		DZA65_RS17900	0.67	+0.4
3,853,543	+		DZA65_RS17900	0.67	-1.4
3,853,543	+		DZA65_RS17900	0.67	+1.3
3,853,543	+		DZA65_RS17900	0.67	+1.2
3,853,543	+		DZA65_RS17900	0.67	+0.3
3,853,543	+		DZA65_RS17900	0.67	-1.1
3,853,543	+		DZA65_RS17900	0.67	-0.7
3,853,543	+		DZA65_RS17900	0.67	+0.4
3,853,543	+		DZA65_RS17900	0.67	+0.2
3,853,543	+		DZA65_RS17900	0.67	+0.4
3,853,543	+		DZA65_RS17900	0.67	+0.4
3,853,543	+		DZA65_RS17900	0.67	-1.5
3,853,543	+		DZA65_RS17900	0.67	+0.2
3,853,544	-		DZA65_RS17900	0.67	-1.8
3,853,544	-		DZA65_RS17900	0.67	-0.7
3,853,544	-		DZA65_RS17900	0.67	-0.4
3,853,544	-		DZA65_RS17900	0.67	-1.0
3,853,544	-		DZA65_RS17900	0.67	+0.0
3,853,544	-		DZA65_RS17900	0.67	+0.6
3,853,544	-		DZA65_RS17900	0.67	-0.6
3,853,544	-		DZA65_RS17900	0.67	+0.2
3,853,544	-		DZA65_RS17900	0.67	+0.0
3,853,544	-		DZA65_RS17900	0.67	-0.8
3,853,544	-		DZA65_RS17900	0.67	-1.2
3,853,544	-		DZA65_RS17900	0.67	-0.4
3,853,544	-		DZA65_RS17900	0.67	+1.1
3,853,544	-		DZA65_RS17900	0.67	-0.3
3,853,544	-		DZA65_RS17900	0.67	-1.2
3,853,544	-		DZA65_RS17900	0.67	+1.0
3,853,608	+		DZA65_RS17900	0.80	-0.3
3,853,608	+		DZA65_RS17900	0.80	-0.8
3,853,609	-		DZA65_RS17900	0.80	+0.2
3,853,674	-				+1.0
3,853,674	-				+0.4
3,853,708	+				+2.0
3,853,708	+				-1.0
3,853,709	-				+0.8
3,853,709	-				-1.0
3,853,709	-				-0.6
3,853,709	-				+0.4
3,853,754	+		DZA65_RS22975	0.27	-0.6
3,853,754	+		DZA65_RS22975	0.27	-1.6
3,853,754	+		DZA65_RS22975	0.27	+1.4
3,853,755	-		DZA65_RS22975	0.27	-0.3
3,853,755	-		DZA65_RS22975	0.27	-1.7
3,853,755	-		DZA65_RS22975	0.27	-0.3
3,853,774	-				-1.0
3,853,814	+		DZA65_RS22975	0.60	-2.6
3,853,866	+				+0.6
3,853,867	-				-0.9
3,853,867	-				-2.3
3,853,917	+				-1.4
3,853,917	+				-0.3
3,853,918	-				-1.0
3,853,944	+				-0.3
3,853,944	+				+1.0
3,854,011	+		DZA65_RS17905	0.11	-0.3
3,854,011	+		DZA65_RS17905	0.11	-1.3
3,854,011	+		DZA65_RS17905	0.11	+0.0
3,854,011	+		DZA65_RS17905	0.11	-0.8
3,854,012	-		DZA65_RS17905	0.11	-1.2