Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16945

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,659,728	+				-1.1
3,659,735	+				+0.6
3,659,736	-				+0.9
3,659,736	-				-1.3
3,659,736	-				+1.4
3,659,739	+				+1.9
3,659,740	-				-1.4
3,659,750	+				+0.3
3,659,759	-				+0.7
3,659,762	-				-1.3
3,659,769	+				+0.9
3,659,770	-				-1.6
3,659,773	+				-0.4
3,659,778	-				+0.3
3,659,813	+				-0.6
3,660,001	+		DZA65_RS16940	0.32	-0.1
3,660,001	+		DZA65_RS16940	0.32	+0.3
3,660,002	-		DZA65_RS16940	0.32	-0.7
3,660,075	+		DZA65_RS16940	0.42	+0.3
3,660,076	-		DZA65_RS16940	0.42	+0.9
3,660,076	-		DZA65_RS16940	0.42	-0.6
3,660,078	-		DZA65_RS16940	0.42	-0.3
3,660,128	+		DZA65_RS16940	0.49	-2.5
3,660,128	+		DZA65_RS16940	0.49	-1.6
3,660,129	-		DZA65_RS16940	0.49	-0.8
3,660,129	-		DZA65_RS16940	0.49	-0.4
3,660,129	-		DZA65_RS16940	0.49	-0.7
3,660,138	+		DZA65_RS16940	0.50	-0.5
3,660,163	+		DZA65_RS16940	0.54	+0.3
3,660,179	+		DZA65_RS16940	0.56	-0.9
3,660,179	+		DZA65_RS16940	0.56	-0.1
3,660,180	-		DZA65_RS16940	0.56	-0.3
3,660,189	+		DZA65_RS16940	0.57	-2.0
3,660,240	+		DZA65_RS16940	0.64	+1.0
3,660,240	+		DZA65_RS16940	0.64	-0.9
3,660,240	+		DZA65_RS16940	0.64	-1.5
3,660,240	+		DZA65_RS16940	0.64	+1.3
3,660,241	-		DZA65_RS16940	0.64	-0.8
3,660,241	-		DZA65_RS16940	0.64	-0.7
3,660,241	-		DZA65_RS16940	0.64	-1.8
3,660,463	-				+0.7
3,660,463	-				-0.1
3,660,489	+				-0.9
3,660,489	+				-1.4
3,660,489	+				-0.4
3,660,489	+				-0.4
3,660,490	-				-0.4
3,660,490	-				-0.9
3,660,490	-				-0.4
3,660,490	-				+0.9
3,660,490	-				+1.9
3,660,490	-				+0.6
3,660,520	+				-0.9
3,660,521	-				-0.9
3,660,521	-				-0.6
3,660,521	-				+0.6
3,660,521	-				-0.4
3,660,537	+				-0.4
3,660,542	+				-0.4
3,660,542	+				-1.6
3,660,542	+				-1.6
3,660,542	+				-0.9
3,660,542	+				+0.3
3,660,542	+				-0.9
3,660,542	+				-0.6
3,660,543	-				-1.8
3,660,543	-				+1.9
3,660,543	-				-0.3
3,660,543	-				+0.3
3,660,543	-				-0.9
3,660,543	-				-1.1
3,660,543	-				-0.4
3,660,612	+				+0.6
3,660,612	+				-0.4
3,660,613	-				-0.4
3,660,613	-				+0.3
3,660,613	-				+1.5
3,660,613	-				+0.0
3,660,614	+				-0.1
3,660,615	-				-1.8
3,660,615	-				+0.9
3,660,615	-				-0.7
3,660,636	+				-0.1
3,660,636	+				+0.3
3,660,636	+				+0.3
3,660,637	-				-1.9
3,660,637	-				-1.9
3,660,637	-				-2.4
3,660,637	-				-3.0
3,660,637	-				-1.6
3,660,637	-				-0.4
3,660,637	-				-3.2
3,660,637	-				-1.4
3,660,772	+				-1.2
3,660,773	-				-2.1
3,660,814	-		DZA65_RS16945	0.13	-0.9
3,660,987	+		DZA65_RS16945	0.25	-0.4
3,660,987	+		DZA65_RS16945	0.25	-0.4
3,660,988	-		DZA65_RS16945	0.26	-1.7
3,660,988	-		DZA65_RS16945	0.26	-2.3
3,660,988	-		DZA65_RS16945	0.26	-0.7
3,660,988	-		DZA65_RS16945	0.26	-0.9
3,660,988	-		DZA65_RS16945	0.26	+0.3
3,661,059	+		DZA65_RS16945	0.31	-0.7
3,661,059	+		DZA65_RS16945	0.31	-1.1
3,661,059	+		DZA65_RS16945	0.31	-1.9
3,661,059	+		DZA65_RS16945	0.31	+0.3
3,661,059	+		DZA65_RS16945	0.31	-2.4
3,661,059	+		DZA65_RS16945	0.31	-0.1
3,661,060	-		DZA65_RS16945	0.31	-0.7
3,661,060	-		DZA65_RS16945	0.31	-0.4
3,661,124	+		DZA65_RS16945	0.36	-2.4
3,661,124	+		DZA65_RS16945	0.36	-2.9
3,661,124	+		DZA65_RS16945	0.36	-1.5
3,661,124	+		DZA65_RS16945	0.36	-1.5
3,661,125	-		DZA65_RS16945	0.36	+0.3
3,661,125	-		DZA65_RS16945	0.36	-2.5
3,661,160	+		DZA65_RS16945	0.38	-0.1
3,661,161	-		DZA65_RS16945	0.38	-2.9
3,661,227	-		DZA65_RS16945	0.43	-0.4
3,661,270	+		DZA65_RS16945	0.46	-2.4
3,661,270	+		DZA65_RS16945	0.46	-1.4
3,661,270	+		DZA65_RS16945	0.46	-1.9
3,661,270	+		DZA65_RS16945	0.46	-0.7
3,661,271	-		DZA65_RS16945	0.46	-0.4
3,661,271	-		DZA65_RS16945	0.46	-1.8
3,661,271	-		DZA65_RS16945	0.46	-2.2
3,661,271	-		DZA65_RS16945	0.46	-1.4
3,661,271	-		DZA65_RS16945	0.46	-0.9
3,661,271	-		DZA65_RS16945	0.46	-1.3
3,661,317	+		DZA65_RS16945	0.50	-1.7
3,661,317	+		DZA65_RS16945	0.50	-1.2
3,661,318	-		DZA65_RS16945	0.50	-1.1
3,661,366	+		DZA65_RS16945	0.54	-0.7
3,661,366	+		DZA65_RS16945	0.54	-2.1
3,661,367	-		DZA65_RS16945	0.54	-1.1
3,661,367	-		DZA65_RS16945	0.54	+1.5
3,661,367	-		DZA65_RS16945	0.54	-2.7
3,661,384	+		DZA65_RS16945	0.55	-1.1
3,661,384	+		DZA65_RS16945	0.55	-0.1
3,661,385	-		DZA65_RS16945	0.55	-1.4
3,661,394	+		DZA65_RS16945	0.56	-1.4
3,661,394	+		DZA65_RS16945	0.56	-0.7
3,661,409	+		DZA65_RS16945	0.57	-0.4
3,661,410	-		DZA65_RS16945	0.57	-2.2
3,661,410	-		DZA65_RS16945	0.57	-0.7
3,661,470	+		DZA65_RS16945	0.61	-2.6
3,661,470	+		DZA65_RS16945	0.61	-1.8
3,661,470	+		DZA65_RS16945	0.61	-0.9
3,661,470	+		DZA65_RS16945	0.61	+1.9
3,661,470	+		DZA65_RS16945	0.61	-1.8
3,661,502	+		DZA65_RS16945	0.64	-1.1
3,661,502	+		DZA65_RS16945	0.64	-3.1
3,661,503	-		DZA65_RS16945	0.64	-2.2
3,661,543	+		DZA65_RS16945	0.67	-0.9
3,661,544	-		DZA65_RS16945	0.67	-1.9
3,661,544	-		DZA65_RS16945	0.67	-1.0
3,661,580	+		DZA65_RS16945	0.69	-0.4
3,661,635	+		DZA65_RS16945	0.73	-1.9
3,661,710	+		DZA65_RS16945	0.79	-0.7
3,661,710	+		DZA65_RS16945	0.79	-1.4
3,661,710	+		DZA65_RS16945	0.79	-0.6
3,661,710	+		DZA65_RS16945	0.79	-0.1
3,661,710	+		DZA65_RS16945	0.79	-0.4
3,661,710	+		DZA65_RS16945	0.79	-0.1
3,661,711	-		DZA65_RS16945	0.79	-0.1
3,661,711	-		DZA65_RS16945	0.79	-2.0
3,661,711	-		DZA65_RS16945	0.79	+0.9
3,661,711	-		DZA65_RS16945	0.79	-1.6
3,661,711	-		DZA65_RS16945	0.79	+1.1
3,661,711	-		DZA65_RS16945	0.79	-2.1
3,661,711	-		DZA65_RS16945	0.79	-2.0
3,661,711	-		DZA65_RS16945	0.79	+0.3
3,661,711	-		DZA65_RS16945	0.79	-0.4
3,661,765	+		DZA65_RS16945	0.83	-0.4
3,661,765	+		DZA65_RS16945	0.83	-0.0
3,661,855	+		DZA65_RS16945	0.90	-0.7
3,661,856	-		DZA65_RS16945	0.90	-0.7
3,662,038	+				-1.1
3,662,038	+				-0.1
3,662,038	+				-0.4
3,662,039	-				-0.2
3,662,039	-				+0.1
3,662,044	-				-0.3
3,662,084	+				-0.6
3,662,084	+				-1.3
3,662,085	-				-1.4
3,662,137	+				-0.9
3,662,137	+				-0.7
3,662,137	+				-1.4
3,662,137	+				-3.8
3,662,137	+				+1.1
3,662,137	+				-1.4
3,662,137	+				-0.4
3,662,137	+				-0.6
3,662,137	+				-1.1
3,662,138	-				-2.9
3,662,138	-				-1.0
3,662,138	-				+0.5
3,662,138	-				-1.8
3,662,186	+				+0.3
3,662,186	+				-1.6
3,662,187	-				-0.4
3,662,200	-				-0.4
3,662,205	+				+0.9
3,662,205	+				-0.7
3,662,206	-				-0.7
3,662,206	-				-0.8
3,662,261	+		DZA65_RS16950	0.20	+0.5
3,662,262	-		DZA65_RS16950	0.20	+1.2
3,662,291	+		DZA65_RS16950	0.28	+0.9
3,662,292	-		DZA65_RS16950	0.28	-1.0
3,662,307	+		DZA65_RS16950	0.32	-0.7
3,662,374	+		DZA65_RS16950	0.49	-0.3
3,662,374	+		DZA65_RS16950	0.49	-1.6
3,662,374	+		DZA65_RS16950	0.49	-1.3
3,662,374	+		DZA65_RS16950	0.49	+0.3
3,662,375	-		DZA65_RS16950	0.49	-0.2
3,662,375	-		DZA65_RS16950	0.49	-0.7
3,662,375	-		DZA65_RS16950	0.49	+0.9
3,662,375	-		DZA65_RS16950	0.49	-0.9
3,662,473	+		DZA65_RS16950	0.75	+0.2
3,662,473	+		DZA65_RS16950	0.75	-2.0
3,662,473	+		DZA65_RS16950	0.75	-1.0
3,662,473	+		DZA65_RS16950	0.75	-2.2
3,662,473	+		DZA65_RS16950	0.75	-1.6
3,662,473	+		DZA65_RS16950	0.75	-1.9
3,662,474	-		DZA65_RS16950	0.75	-1.1
3,662,474	-		DZA65_RS16950	0.75	-1.7
3,662,474	-		DZA65_RS16950	0.75	+0.4
3,662,474	-		DZA65_RS16950	0.75	-0.1
3,662,474	-		DZA65_RS16950	0.75	-0.8
3,662,520	+		DZA65_RS16950	0.87	+1.6
3,662,535	+				-0.7
3,662,535	+				-0.4
3,662,536	-				+0.3
3,662,536	-				-1.6
3,662,557	-				+0.9
3,662,563	-				+0.9
3,662,593	+				-0.6
3,662,594	-				-1.6
3,662,594	-				+0.9
3,662,680	+				+0.6
3,662,680	+				-1.6
3,662,680	+				-0.4
3,662,681	-				+0.7
3,662,681	-				-1.6
3,662,681	-				-0.4
3,662,683	-				-0.4
3,662,683	-				-0.7
3,662,713	-				-2.4
3,662,893	+				+0.3
3,662,910	+				-0.6
3,662,910	+				+0.9
3,662,911	-				-0.4
3,662,911	-				-1.3
3,662,937	+				-0.9
3,662,937	+				+0.4
3,662,937	+				+1.9
3,662,974	-				-0.6
3,662,978	+				-0.2
3,662,990	+				-1.8