Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16435

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,560,205	-		DZA65_RS16420	0.77	-2.0
3,560,205	-		DZA65_RS16420	0.77	-0.1
3,560,227	-		DZA65_RS16420	0.83	+0.3
3,560,227	-		DZA65_RS16420	0.83	+0.3
3,560,243	+		DZA65_RS16420	0.88	-0.5
3,560,243	+		DZA65_RS16420	0.88	+0.9
3,560,243	+		DZA65_RS16420	0.88	+0.4
3,560,243	+		DZA65_RS16420	0.88	-0.1
3,560,243	+		DZA65_RS16420	0.88	-0.5
3,560,243	+		DZA65_RS16420	0.88	-0.9
3,560,243	+		DZA65_RS16420	0.88	+1.3
3,560,243	+		DZA65_RS16420	0.88	-0.7
3,560,243	+		DZA65_RS16420	0.88	+0.4
3,560,243	+		DZA65_RS16420	0.88	+1.9
3,560,244	-		DZA65_RS16420	0.89	-1.1
3,560,244	-		DZA65_RS16420	0.89	-2.1
3,560,244	-		DZA65_RS16420	0.89	+0.9
3,560,244	-		DZA65_RS16420	0.89	-1.1
3,560,244	-		DZA65_RS16420	0.89	-0.7
3,560,244	-		DZA65_RS16420	0.89	-2.7
3,560,244	-		DZA65_RS16420	0.89	+1.4
3,560,244	-		DZA65_RS16420	0.89	+0.1
3,560,244	-		DZA65_RS16420	0.89	-0.9
3,560,244	-		DZA65_RS16420	0.89	+0.9
3,560,247	+		DZA65_RS16420	0.90	-1.3
3,560,247	+		DZA65_RS16420	0.90	-2.8
3,560,247	+		DZA65_RS16420	0.90	-1.6
3,560,247	+		DZA65_RS16420	0.90	-1.7
3,560,247	+		DZA65_RS16420	0.90	+0.9
3,560,248	-				-0.7
3,560,248	-				-0.9
3,560,269	+				-0.9
3,560,270	-				-0.7
3,560,280	+				+1.9
3,560,280	+				-1.1
3,560,280	+				-1.8
3,560,294	+				+0.3
3,560,295	-				-0.4
3,560,327	+				-0.1
3,560,328	-				+0.3
3,560,350	-				+0.6
3,560,417	+		DZA65_RS16425	0.25	-0.7
3,560,497	-		DZA65_RS16425	0.46	-0.5
3,560,497	-		DZA65_RS16425	0.46	+0.9
3,560,609	+		DZA65_RS16425	0.77	-0.1
3,560,609	+		DZA65_RS16425	0.77	-0.7
3,560,610	-		DZA65_RS16425	0.77	+0.9
3,560,610	-		DZA65_RS16425	0.77	-1.2
3,560,635	+		DZA65_RS16425	0.84	-0.2
3,560,635	+		DZA65_RS16425	0.84	-1.1
3,560,636	-		DZA65_RS16425	0.84	-1.7
3,560,673	-				-1.8
3,560,673	-				-1.1
3,560,696	+				+0.6
3,560,696	+				-1.5
3,560,696	+				-1.3
3,560,696	+				-1.0
3,560,697	-				-1.1
3,560,697	-				-0.0
3,560,733	+				-1.6
3,560,736	+				-0.1
3,560,737	-				-0.5
3,560,737	-				-0.1
3,560,765	-		DZA65_RS16430	0.14	-0.1
3,560,765	-		DZA65_RS16430	0.14	-1.7
3,560,776	+		DZA65_RS16430	0.16	-0.9
3,560,776	+		DZA65_RS16430	0.16	-0.5
3,560,776	+		DZA65_RS16430	0.16	-0.5
3,560,776	+		DZA65_RS16430	0.16	+2.9
3,560,776	+		DZA65_RS16430	0.16	-0.7
3,560,776	+		DZA65_RS16430	0.16	+1.9
3,560,777	-		DZA65_RS16430	0.16	-0.1
3,560,777	-		DZA65_RS16430	0.16	-0.6
3,560,777	-				+0.1
3,560,814	+		DZA65_RS16430	0.25	-0.4
3,560,814	+		DZA65_RS16430	0.25	+0.3
3,560,815	-				-0.1
3,560,815	-		DZA65_RS16430	0.25	-3.3
3,560,818	+		DZA65_RS16430	0.26	+0.3
3,560,818	+		DZA65_RS16430	0.26	-0.6
3,560,819	-		DZA65_RS16430	0.26	-0.1
3,560,819	-		DZA65_RS16430	0.26	-2.0
3,560,819	-		DZA65_RS16430	0.26	-2.5
3,560,862	-		DZA65_RS16430	0.36	+0.9
3,560,862	-		DZA65_RS16430	0.36	+1.9
3,560,913	+		DZA65_RS16430	0.47	-1.6
3,560,913	+		DZA65_RS16430	0.47	+0.1
3,560,913	+		DZA65_RS16430	0.47	+1.4
3,560,913	+		DZA65_RS16430	0.47	-0.3
3,560,913	+		DZA65_RS16430	0.47	-3.1
3,560,914	-		DZA65_RS16430	0.47	-2.7
3,560,914	-		DZA65_RS16430	0.47	-0.3
3,560,914	-		DZA65_RS16430	0.47	-0.7
3,560,935	+		DZA65_RS16430	0.52	-1.0
3,560,964	-		DZA65_RS16430	0.59	-1.4
3,560,995	+		DZA65_RS16430	0.66	-0.7
3,560,995	+		DZA65_RS16430	0.66	-0.7
3,561,162	-				-0.1
3,561,162	-				-0.6
3,561,162	-				+1.3
3,561,187	+				-0.1
3,561,189	+				-1.6
3,561,190	-				-2.0
3,561,359	+		DZA65_RS16435	0.17	-2.8
3,561,359	+		DZA65_RS16435	0.17	+0.3
3,561,359	+		DZA65_RS16435	0.17	+0.9
3,561,359	+		DZA65_RS16435	0.17	+0.3
3,561,359	+		DZA65_RS16435	0.17	-0.5
3,561,359	+		DZA65_RS16435	0.17	+0.9
3,561,359	+		DZA65_RS16435	0.17	-1.5
3,561,359	+		DZA65_RS16435	0.17	+0.3
3,561,359	+		DZA65_RS16435	0.17	+0.3
3,561,359	+		DZA65_RS16435	0.17	-0.9
3,561,360	-		DZA65_RS16435	0.17	-1.3
3,561,360	-		DZA65_RS16435	0.17	-0.7
3,561,360	-		DZA65_RS16435	0.17	-0.7
3,561,408	+		DZA65_RS16435	0.21	-0.9
3,561,408	+		DZA65_RS16435	0.21	-2.3
3,561,408	+		DZA65_RS16435	0.21	+0.4
3,561,488	+		DZA65_RS16435	0.30	+0.6
3,561,488	+		DZA65_RS16435	0.30	-1.1
3,561,488	+		DZA65_RS16435	0.30	-1.8
3,561,489	-		DZA65_RS16435	0.30	-0.5
3,561,508	+		DZA65_RS16435	0.32	+0.9
3,561,527	+		DZA65_RS16435	0.34	+0.3
3,561,528	-		DZA65_RS16435	0.34	-0.9
3,561,535	-		DZA65_RS16435	0.34	+0.9
3,561,535	-		DZA65_RS16435	0.34	-1.3
3,561,549	-				+0.4
3,561,588	+		DZA65_RS16435	0.40	-1.0
3,561,589	-		DZA65_RS16435	0.40	-0.1
3,561,589	-		DZA65_RS16435	0.40	+0.3
3,561,589	-		DZA65_RS16435	0.40	-1.3
3,561,637	+		DZA65_RS16435	0.45	-1.5
3,561,637	+		DZA65_RS16435	0.45	-0.9
3,561,637	+		DZA65_RS16435	0.45	-1.2
3,561,637	+		DZA65_RS16435	0.45	-0.1
3,561,637	+		DZA65_RS16435	0.45	-0.7
3,561,637	+		DZA65_RS16435	0.45	-1.1
3,561,637	+		DZA65_RS16435	0.45	+1.1
3,561,637	+		DZA65_RS16435	0.45	-0.5
3,561,637	+		DZA65_RS16435	0.45	+1.2
3,561,638	-		DZA65_RS16435	0.45	-1.1
3,561,638	-		DZA65_RS16435	0.45	-1.2
3,561,638	-		DZA65_RS16435	0.45	+2.3
3,561,638	-		DZA65_RS16435	0.45	+0.5
3,561,638	-		DZA65_RS16435	0.45	-0.8
3,561,638	-		DZA65_RS16435	0.45	-2.3
3,561,638	-		DZA65_RS16435	0.45	+0.4
3,561,638	-		DZA65_RS16435	0.45	-1.8
3,561,638	-		DZA65_RS16435	0.45	-2.1
3,561,638	-		DZA65_RS16435	0.45	-1.3
3,561,638	-		DZA65_RS16435	0.45	+2.7
3,561,638	-		DZA65_RS16435	0.45	+3.4
3,561,638	-		DZA65_RS16435	0.45	-1.3
3,561,638	-				-0.1
3,561,638	-		DZA65_RS16435	0.45	-0.1
3,561,638	-		DZA65_RS16435	0.45	-0.9
3,561,638	-		DZA65_RS16435	0.45	+2.2
3,561,638	-		DZA65_RS16435	0.45	+0.3
3,561,638	-		DZA65_RS16435	0.45	-0.8
3,561,638	-		DZA65_RS16435	0.45	+1.1
3,561,655	+		DZA65_RS16435	0.47	-0.1
3,561,656	-		DZA65_RS16435	0.47	-1.2
3,561,791	+		DZA65_RS16435	0.60	-1.3
3,561,791	+		DZA65_RS16435	0.60	-1.6
3,561,792	-		DZA65_RS16435	0.60	+0.1
3,561,792	-		DZA65_RS16435	0.60	-0.1
3,561,792	-		DZA65_RS16435	0.60	-0.9
3,561,796	+		DZA65_RS16435	0.61	+1.3
3,561,796	+		DZA65_RS16435	0.61	-1.2
3,561,867	+		DZA65_RS16435	0.68	+0.6
3,561,870	+		DZA65_RS16435	0.68	-1.1
3,561,870	+		DZA65_RS16435	0.68	-1.6
3,561,870	+		DZA65_RS16435	0.68	+0.5
3,561,871	-		DZA65_RS16435	0.68	-1.1
3,561,871	-		DZA65_RS16435	0.68	-0.9
3,561,908	+		DZA65_RS16435	0.72	-0.7
3,561,908	+		DZA65_RS16435	0.72	-0.9
3,561,908	+		DZA65_RS16435	0.72	+0.5
3,561,909	-		DZA65_RS16435	0.72	-1.1
3,561,909	-		DZA65_RS16435	0.72	-2.2
3,561,974	+		DZA65_RS16435	0.79	-0.5
3,561,974	+		DZA65_RS16435	0.79	-0.1
3,561,974	+		DZA65_RS16435	0.79	+0.3
3,561,975	-		DZA65_RS16435	0.79	+1.9
3,562,080	+		DZA65_RS16435	0.90	+1.1
3,562,081	-		DZA65_RS16435	0.90	+0.5
3,562,116	+				-1.5
3,562,130	-				+0.9
3,562,165	-				-0.1
3,562,198	+				+0.6
3,562,198	+				-0.3
3,562,198	+				-1.9
3,562,198	+				-1.1
3,562,198	+				+1.9
3,562,199	-				-0.9
3,562,199	-				+0.3
3,562,207	+				-1.3
3,562,209	+				-0.5
3,562,210	-				-0.7
3,562,210	-				+1.3
3,562,210	-				+0.3
3,562,210	-				-1.1
3,562,210	-				-0.5
3,562,210	-				-0.5
3,562,227	-				+2.4
3,562,227	-				+1.3
3,562,250	+				-0.6
3,562,251	-				-2.2
3,562,339	+		DZA65_RS16440	0.21	+1.9
3,562,394	+		DZA65_RS16440	0.30	-0.3
3,562,394	+		DZA65_RS16440	0.30	-0.9
3,562,395	-		DZA65_RS16440	0.30	+0.5
3,562,395	-		DZA65_RS16440	0.30	-0.1
3,562,395	-		DZA65_RS16440	0.30	-0.1
3,562,395	-		DZA65_RS16440	0.30	+0.6
3,562,587	+		DZA65_RS16440	0.59	+0.2
3,562,634	-		DZA65_RS16440	0.66	-1.3
3,562,634	-		DZA65_RS16440	0.66	+0.3
3,562,862	+				+0.9
3,562,862	+				-1.3
3,562,862	+				-0.4
3,562,862	+				-0.2
3,562,862	+				+0.9
3,562,863	-				+0.9
3,562,863	-				+0.9
3,562,863	-				-0.5
3,562,863	-				-0.7
3,562,864	+				-1.3
3,562,864	+				+1.3
3,562,864	+				-0.7
3,562,864	+				-0.1
3,562,864	+				-0.1
3,562,864	+				-1.9
3,562,864	+				+0.9
3,562,864	+				-1.8
3,562,865	-				-1.3
3,562,865	-				+0.5
3,562,865	-				-0.5
3,562,865	-				-1.8
3,562,865	-				-1.3
3,562,865	-				+0.3
3,562,865	-				-0.1
3,562,865	-				-1.5
3,562,899	-				-0.9
3,562,904	+				-1.2
3,562,948	+				-2.7
3,562,976	+				-1.4
3,562,976	+				-0.6
3,562,977	-				-0.9
3,562,977	-				-0.3
3,562,992	-				-0.2
3,563,009	+		DZA65_RS16445	0.11	-2.5
3,563,043	-		DZA65_RS16445	0.16	-0.0
3,563,099	-		DZA65_RS16445	0.22	-1.8
3,563,099	-		DZA65_RS16445	0.22	-2.3
3,563,099	-		DZA65_RS16445	0.22	+0.3
3,563,165	-		DZA65_RS16445	0.31	+0.3