Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15905

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,451,744	-		DZA65_RS15895	0.60	-1.1
3,451,764	-		DZA65_RS15895	0.63	-0.2
3,451,766	+		DZA65_RS15895	0.63	-1.3
3,451,766	+		DZA65_RS15895	0.63	+1.8
3,451,766	+		DZA65_RS15895	0.63	-1.2
3,451,766	+		DZA65_RS15895	0.63	-2.3
3,451,766	+		DZA65_RS15895	0.63	-2.4
3,451,767	-		DZA65_RS15895	0.63	-1.3
3,451,767	-		DZA65_RS15895	0.63	-0.3
3,451,767	-		DZA65_RS15895	0.63	-1.0
3,451,767	-		DZA65_RS15895	0.63	+1.0
3,451,767	-		DZA65_RS15895	0.63	+0.3
3,451,767	-		DZA65_RS15895	0.63	-1.2
3,451,767	-		DZA65_RS15895	0.63	-0.7
3,451,767	-		DZA65_RS15895	0.63	-1.9
3,451,767	-		DZA65_RS15895	0.63	-0.3
3,451,770	+		DZA65_RS15895	0.64	-1.3
3,451,770	+		DZA65_RS15895	0.64	-0.7
3,451,770	+		DZA65_RS15895	0.64	+1.4
3,451,770	+		DZA65_RS15895	0.64	+1.3
3,451,770	+		DZA65_RS15895	0.64	+0.3
3,451,771	-		DZA65_RS15895	0.64	+1.1
3,451,771	-		DZA65_RS15895	0.64	-0.2
3,451,771	-		DZA65_RS15895	0.64	-0.2
3,451,776	+		DZA65_RS15895	0.65	+0.3
3,451,776	+		DZA65_RS15895	0.65	+0.3
3,451,776	+		DZA65_RS15895	0.65	-2.3
3,451,776	+		DZA65_RS15895	0.65	-1.2
3,451,776	+		DZA65_RS15895	0.65	-0.3
3,451,777	-		DZA65_RS15895	0.65	+0.3
3,451,777	-		DZA65_RS15895	0.65	-0.9
3,451,777	-		DZA65_RS15895	0.65	-1.0
3,451,777	-		DZA65_RS15895	0.65	-0.5
3,451,777	-		DZA65_RS15895	0.65	-0.5
3,451,777	-		DZA65_RS15895	0.65	-0.7
3,451,810	+		DZA65_RS15895	0.69	-1.7
3,451,810	+		DZA65_RS15895	0.69	-2.0
3,451,810	+		DZA65_RS15895	0.69	-2.2
3,451,811	-		DZA65_RS15895	0.69	+0.6
3,451,837	-		DZA65_RS15895	0.73	-0.5
3,451,837	-		DZA65_RS15895	0.73	+0.3
3,451,837	-		DZA65_RS15895	0.73	+0.5
3,451,837	-		DZA65_RS15895	0.73	+1.3
3,451,857	+		DZA65_RS15895	0.75	-0.9
3,451,860	+		DZA65_RS15895	0.76	-1.1
3,451,860	+				-1.0
3,451,860	+		DZA65_RS15895	0.76	-0.7
3,451,860	+		DZA65_RS15895	0.76	+0.3
3,451,860	+		DZA65_RS15895	0.76	+0.3
3,451,860	+		DZA65_RS15895	0.76	+0.0
3,451,861	-		DZA65_RS15895	0.76	-1.0
3,451,861	-		DZA65_RS15895	0.76	-1.3
3,451,861	-		DZA65_RS15895	0.76	-0.7
3,451,861	-		DZA65_RS15895	0.76	-0.4
3,451,861	-		DZA65_RS15895	0.76	-1.0
3,451,861	-		DZA65_RS15895	0.76	+0.8
3,451,966	+				-1.9
3,451,966	+				-2.2
3,451,966	+				+0.4
3,451,966	+				-1.3
3,451,966	+				-1.3
3,451,966	+				-1.2
3,451,966	+				-1.7
3,451,967	-				+0.3
3,451,967	-				-1.2
3,451,967	-				-0.7
3,451,967	-				-2.2
3,451,967	-				-0.2
3,451,967	-				-2.0
3,451,967	-				+0.8
3,451,967	-				-1.6
3,452,032	+				-0.2
3,452,033	-				+0.3
3,452,042	+				-2.3
3,452,042	+				-1.5
3,452,042	+				-0.5
3,452,042	+				-0.7
3,452,042	+				-1.4
3,452,043	-				+1.3
3,452,046	+				-2.1
3,452,047	-				-0.2
3,452,047	-				-0.7
3,452,047	-				-0.7
3,452,047	-				+0.3
3,452,047	-				-3.0
3,452,047	-				+0.5
3,452,047	-				-0.2
3,452,071	+				-0.5
3,452,072	-				-1.3
3,452,072	-				-0.6
3,452,072	-				+0.0
3,452,112	+		DZA65_RS15900	0.11	+1.1
3,452,112	+		DZA65_RS15900	0.11	-0.2
3,452,113	-		DZA65_RS15900	0.12	-0.2
3,452,214	-		DZA65_RS15900	0.39	-0.5
3,452,237	+		DZA65_RS15900	0.46	+0.8
3,452,380	+		DZA65_RS15900	0.85	-1.2
3,452,381	-		DZA65_RS15900	0.85	+1.8
3,452,381	-		DZA65_RS15900	0.85	-1.9
3,452,420	+				-1.0
3,452,420	+				+0.5
3,452,420	+				-0.7
3,452,421	-				-1.3
3,452,421	-				-1.2
3,452,421	-				-0.2
3,452,456	+				-1.2
3,452,456	+				-2.3
3,452,457	-				-1.2
3,452,458	+				-0.7
3,452,459	-				+0.8
3,452,459	-				+1.3
3,452,459	-				-1.5
3,452,459	-				-0.7
3,452,459	-				-1.0
3,452,483	-				+0.3
3,452,502	+				-1.6
3,452,508	+				-0.7
3,452,509	-				-0.6
3,452,509	-				-1.5
3,452,509	-				-0.5
3,452,509	-				-1.2
3,452,510	+				-0.8
3,452,510	+				-2.0
3,452,561	-				+1.7
3,452,561	-				-1.2
3,452,582	-				-1.6
3,452,599	+				+0.7
3,452,623	+				-1.0
3,452,623	+				-1.0
3,452,623	+				+0.3
3,452,624	-				-1.3
3,452,624	-				-0.2
3,452,624	-				-1.1
3,452,627	+				+0.0
3,452,627	+				-0.7
3,452,627	+				+0.1
3,452,627	+				-0.2
3,452,627	+				-1.3
3,452,628	-				+1.8
3,452,628	-				+0.5
3,452,662	+				-0.7
3,452,668	+				-1.7
3,452,669	-				-0.7
3,452,682	+				+0.8
3,452,718	-				-0.5
3,452,718	-				+1.8
3,452,774	+				+0.3
3,452,774	+				+0.3
3,452,775	-				-2.1
3,452,828	+				+0.3
3,452,828	+				-0.2
3,452,828	+				+0.0
3,452,829	-				-1.5
3,452,829	-				-1.0
3,452,829	-				-1.3
3,452,872	+		DZA65_RS15905	0.14	-1.3
3,452,872	+		DZA65_RS15905	0.14	+0.3
3,452,873	-		DZA65_RS15905	0.14	+1.8
3,452,873	-		DZA65_RS15905	0.14	-1.3
3,452,922	-		DZA65_RS15905	0.19	-1.3
3,452,922	-		DZA65_RS15905	0.19	-1.2
3,452,945	-		DZA65_RS15905	0.22	-0.7
3,452,945	-		DZA65_RS15905	0.22	-1.4
3,452,963	+		DZA65_RS15905	0.24	+1.0
3,452,963	+		DZA65_RS15905	0.24	+0.1
3,452,963	+		DZA65_RS15905	0.24	-0.8
3,452,964	-		DZA65_RS15905	0.24	-1.7
3,452,964	-		DZA65_RS15905	0.24	+0.5
3,452,964	-		DZA65_RS15905	0.24	+0.3
3,452,964	-		DZA65_RS15905	0.24	-2.0
3,452,964	-		DZA65_RS15905	0.24	+0.3
3,452,964	-		DZA65_RS15905	0.24	-1.1
3,453,008	+		DZA65_RS15905	0.28	-0.3
3,453,008	+		DZA65_RS15905	0.28	-2.2
3,453,009	-		DZA65_RS15905	0.29	-1.0
3,453,133	-		DZA65_RS15905	0.42	-0.3
3,453,140	+		DZA65_RS15905	0.43	+0.0
3,453,140	+		DZA65_RS15905	0.43	-2.0
3,453,140	+		DZA65_RS15905	0.43	-0.0
3,453,140	+		DZA65_RS15905	0.43	-1.9
3,453,140	+		DZA65_RS15905	0.43	-0.7
3,453,140	+		DZA65_RS15905	0.43	-1.5
3,453,140	+		DZA65_RS15905	0.43	+1.3
3,453,140	+		DZA65_RS15905	0.43	-1.6
3,453,140	+		DZA65_RS15905	0.43	-0.7
3,453,140	+		DZA65_RS15905	0.43	-0.2
3,453,141	-		DZA65_RS15905	0.43	-1.2
3,453,141	-		DZA65_RS15905	0.43	-0.5
3,453,141	-				+0.0
3,453,141	-		DZA65_RS15905	0.43	-1.0
3,453,141	-		DZA65_RS15905	0.43	-1.6
3,453,141	-		DZA65_RS15905	0.43	-2.4
3,453,171	+		DZA65_RS15905	0.46	-1.3
3,453,172	-		DZA65_RS15905	0.46	-0.6
3,453,172	-		DZA65_RS15905	0.46	+0.8
3,453,210	+		DZA65_RS15905	0.50	-2.7
3,453,210	+		DZA65_RS15905	0.50	-0.5
3,453,210	+		DZA65_RS15905	0.50	-0.7
3,453,210	+		DZA65_RS15905	0.50	-1.0
3,453,210	+		DZA65_RS15905	0.50	-0.3
3,453,211	-		DZA65_RS15905	0.50	-0.7
3,453,211	-		DZA65_RS15905	0.50	-0.5
3,453,211	-				-0.7
3,453,213	+		DZA65_RS15905	0.51	-0.8
3,453,213	+		DZA65_RS15905	0.51	-1.2
3,453,214	-		DZA65_RS15905	0.51	-0.5
3,453,214	-		DZA65_RS15905	0.51	-1.0
3,453,214	-		DZA65_RS15905	0.51	+0.3
3,453,222	-		DZA65_RS15905	0.52	+0.1
3,453,266	+		DZA65_RS15905	0.56	+0.8
3,453,266	+		DZA65_RS15905	0.56	+0.0
3,453,266	+		DZA65_RS15905	0.56	-0.7
3,453,266	+		DZA65_RS15905	0.56	-2.3
3,453,266	+		DZA65_RS15905	0.56	-0.2
3,453,266	+		DZA65_RS15905	0.56	-1.4
3,453,266	+		DZA65_RS15905	0.56	-2.4
3,453,266	+		DZA65_RS15905	0.56	-2.2
3,453,266	+		DZA65_RS15905	0.56	-0.3
3,453,267	-		DZA65_RS15905	0.56	-0.5
3,453,267	-		DZA65_RS15905	0.56	+0.3
3,453,267	-		DZA65_RS15905	0.56	+0.8
3,453,267	-		DZA65_RS15905	0.56	+0.6
3,453,267	-		DZA65_RS15905	0.56	+1.4
3,453,267	-		DZA65_RS15905	0.56	-1.2
3,453,267	-		DZA65_RS15905	0.56	-0.7
3,453,267	-		DZA65_RS15905	0.56	-1.5
3,453,267	-		DZA65_RS15905	0.56	-0.2
3,453,267	-		DZA65_RS15905	0.56	-1.0
3,453,267	-		DZA65_RS15905	0.56	-0.9
3,453,267	-		DZA65_RS15905	0.56	-0.5
3,453,267	-		DZA65_RS15905	0.56	+0.7
3,453,278	+		DZA65_RS15905	0.58	-0.2
3,453,278	+		DZA65_RS15905	0.58	+0.1
3,453,279	-		DZA65_RS15905	0.58	-0.7
3,453,279	-		DZA65_RS15905	0.58	-0.2
3,453,320	-		DZA65_RS15905	0.62	-0.3
3,453,406	+		DZA65_RS15905	0.71	-0.5
3,453,406	+		DZA65_RS15905	0.71	-2.5
3,453,407	-		DZA65_RS15905	0.72	-0.2
3,453,424	+		DZA65_RS15905	0.73	-0.7
3,453,426	+		DZA65_RS15905	0.74	-0.4
3,453,426	+		DZA65_RS15905	0.74	+0.3
3,453,426	+		DZA65_RS15905	0.74	-0.5
3,453,426	+		DZA65_RS15905	0.74	+0.8
3,453,426	+		DZA65_RS15905	0.74	+0.0
3,453,426	+		DZA65_RS15905	0.74	+0.6
3,453,426	+				+0.3
3,453,427	-		DZA65_RS15905	0.74	-0.2
3,453,427	-		DZA65_RS15905	0.74	-1.6
3,453,427	-		DZA65_RS15905	0.74	-0.5
3,453,427	-		DZA65_RS15905	0.74	-1.2
3,453,427	-		DZA65_RS15905	0.74	-1.1
3,453,427	-		DZA65_RS15905	0.74	-0.7
3,453,427	-		DZA65_RS15905	0.74	-1.2
3,453,427	-		DZA65_RS15905	0.74	-2.3
3,453,427	-		DZA65_RS15905	0.74	-2.4
3,453,576	+		DZA65_RS15905	0.90	-1.9
3,453,576	+		DZA65_RS15905	0.90	+2.8
3,453,576	+		DZA65_RS15905	0.90	-2.0
3,453,577	-		DZA65_RS15905	0.90	-0.7
3,453,577	-		DZA65_RS15905	0.90	+1.5
3,453,581	+				+0.3
3,453,582	-				-0.6
3,453,644	+				+0.3
3,453,692	+				-0.6
3,453,692	+				-1.2
3,453,693	-				-0.2
3,453,695	+				-1.6
3,453,704	+				-1.2
3,453,707	+				-1.6
3,453,707	+				+0.1
3,453,707	+				-0.7
3,453,707	+				-0.7
3,453,707	+				-0.9
3,453,707	+				-1.2
3,453,708	-				-1.1
3,453,708	-				-1.2
3,453,715	+				-1.9
3,453,715	+				-1.9
3,453,715	+				-1.5
3,453,716	-				-1.2
3,453,716	-				-2.7
3,453,716	-				+3.4
3,453,716	-				-0.5
3,453,724	-				-2.4
3,453,813	+				-1.7
3,453,813	+				-0.2
3,453,813	+				+1.0
3,453,813	+				-1.0
3,453,813	+				-2.1
3,453,813	+				-0.2
3,453,814	-				+0.3
3,453,814	-				-1.8
3,453,814	-				+0.3
3,453,814	-				-0.5
3,453,814	-				+1.8
3,453,814	-				-1.3
3,453,814	-				+1.3
3,453,818	+				-2.2
3,453,818	+				-0.3
3,453,818	+				-0.5
3,453,818	+				-2.2
3,453,819	-				-1.3
3,453,825	+				-0.3
3,453,825	+				-0.3
3,453,826	-				-0.0
3,453,826	-				-1.7
3,453,826	-				-0.7
3,453,858	+				+0.5
3,453,858	+				-1.5
3,453,858	+				+0.0
3,453,858	+				-2.1
3,453,872	+				-1.7
3,453,873	-				+0.6
3,453,873	-				-1.2
3,453,873	-				-1.6
3,453,873	-				-2.7
3,453,879	+				-0.2
3,453,879	+				-1.5
3,453,879	+				+0.3
3,453,880	-				-1.5
3,453,880	-				-1.5
3,453,882	+				-0.5
3,453,883	-				-0.5
3,453,883	-				-1.3
3,453,883	-				-0.2
3,453,913	+				-0.5
3,453,913	+				-2.9
3,453,913	+				-3.0
3,453,913	+				-1.3
3,453,913	+				-2.0
3,453,913	+				-1.2
3,453,913	+				-1.2
3,453,914	-				-1.3
3,453,914	-				+0.5
3,453,914	-				-0.0
3,453,914	-				+1.8
3,453,914	-				-0.3
3,453,971	+		DZA65_RS15910	0.10	-2.3
3,453,971	+		DZA65_RS15910	0.10	-0.5
3,453,971	+		DZA65_RS15910	0.10	-0.7
3,453,971	+		DZA65_RS15910	0.10	-0.7
3,453,971	+		DZA65_RS15910	0.10	-1.0
3,453,971	+		DZA65_RS15910	0.10	-0.2
3,453,971	+		DZA65_RS15910	0.10	-1.5
3,453,972	-		DZA65_RS15910	0.10	-2.0
3,453,972	-		DZA65_RS15910	0.10	-1.5
3,453,972	-		DZA65_RS15910	0.10	-1.0
3,453,972	-		DZA65_RS15910	0.10	+0.7
3,453,972	-		DZA65_RS15910	0.10	-0.5
3,453,986	+		DZA65_RS15910	0.11	-1.6
3,454,002	+		DZA65_RS15910	0.13	+0.3
3,454,002	+		DZA65_RS15910	0.13	-0.7
3,454,002	+		DZA65_RS15910	0.13	-1.6
3,454,002	+		DZA65_RS15910	0.13	-1.7
3,454,003	-		DZA65_RS15910	0.13	+0.3
3,454,003	-		DZA65_RS15910	0.13	+0.0
3,454,003	-		DZA65_RS15910	0.13	+1.8
3,454,036	-		DZA65_RS15910	0.16	+0.3
3,454,120	-		DZA65_RS15910	0.23	-1.0
3,454,120	-		DZA65_RS15910	0.23	+0.0
3,454,143	+		DZA65_RS15910	0.25	+0.8
3,454,144	-		DZA65_RS15910	0.25	-1.6
3,454,188	+		DZA65_RS15910	0.29	+1.1
3,454,188	+		DZA65_RS15910	0.29	-0.5
3,454,188	+		DZA65_RS15910	0.29	+0.3
3,454,188	+		DZA65_RS15910	0.29	-0.5
3,454,188	+		DZA65_RS15910	0.29	-0.2
3,454,188	+		DZA65_RS15910	0.29	-1.2
3,454,189	-		DZA65_RS15910	0.29	+0.0
3,454,189	-		DZA65_RS15910	0.29	-0.7
3,454,189	-		DZA65_RS15910	0.29	-1.5
3,454,189	-		DZA65_RS15910	0.29	-1.2
3,454,231	-		DZA65_RS15910	0.32	-0.5
3,454,231	-		DZA65_RS15910	0.32	+0.1
3,454,249	-		DZA65_RS15910	0.34	-1.2
3,454,295	+		DZA65_RS15910	0.38	-2.6
3,454,295	+		DZA65_RS15910	0.38	-0.5
3,454,295	+		DZA65_RS15910	0.38	-0.3
3,454,295	+		DZA65_RS15910	0.38	+2.2
3,454,295	+		DZA65_RS15910	0.38	-1.5
3,454,296	-		DZA65_RS15910	0.38	+0.2
3,454,296	-		DZA65_RS15910	0.38	+0.0
3,454,296	-		DZA65_RS15910	0.38	-1.5
3,454,296	-		DZA65_RS15910	0.38	-2.3
3,454,296	-		DZA65_RS15910	0.38	+1.8
3,454,296	-		DZA65_RS15910	0.38	-1.6
3,454,297	+		DZA65_RS15910	0.38	-0.4
3,454,297	+		DZA65_RS15910	0.38	-0.3
3,454,297	+		DZA65_RS15910	0.38	-0.5
3,454,297	+		DZA65_RS15910	0.38	-0.8
3,454,298	-		DZA65_RS15910	0.38	+0.8
3,454,298	-		DZA65_RS15910	0.38	-1.5
3,454,298	-		DZA65_RS15910	0.38	-2.1
3,454,298	-		DZA65_RS15910	0.38	-2.2
3,454,298	-		DZA65_RS15910	0.38	-0.6
3,454,313	-		DZA65_RS15910	0.40	-1.3
3,454,315	+		DZA65_RS15910	0.40	-1.2
3,454,316	-		DZA65_RS15910	0.40	-1.2
3,454,316	-		DZA65_RS15910	0.40	+0.8
3,454,316	-		DZA65_RS15910	0.40	-1.7
3,454,316	-		DZA65_RS15910	0.40	-1.6
3,454,378	+				-1.0
3,454,379	-		DZA65_RS15910	0.45	-2.0
3,454,379	-		DZA65_RS15910	0.45	-1.9
3,454,379	-		DZA65_RS15910	0.45	-0.2
3,454,380	+		DZA65_RS15910	0.45	-1.6
3,454,380	+		DZA65_RS15910	0.45	-0.9
3,454,381	-		DZA65_RS15910	0.45	-1.2
3,454,381	-		DZA65_RS15910	0.45	-2.0
3,454,446	-		DZA65_RS15910	0.51	+0.4
3,454,523	-				+0.3
3,454,558	+		DZA65_RS15910	0.61	-0.5
3,454,615	+		DZA65_RS15910	0.65	-1.6
3,454,615	+		DZA65_RS15910	0.65	-0.7
3,454,616	-		DZA65_RS15910	0.66	-0.4