Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15815

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,433,283	-		DZA65_RS15810	0.26	-1.3
3,433,289	+		DZA65_RS15810	0.27	-3.2
3,433,324	+		DZA65_RS15810	0.29	-1.6
3,433,324	+		DZA65_RS15810	0.29	-1.0
3,433,324	+		DZA65_RS15810	0.29	+0.6
3,433,324	+		DZA65_RS15810	0.29	-1.0
3,433,325	-		DZA65_RS15810	0.29	+0.8
3,433,325	-		DZA65_RS15810	0.29	-1.2
3,433,325	-		DZA65_RS15810	0.29	-2.3
3,433,325	-		DZA65_RS15810	0.29	+0.3
3,433,325	-		DZA65_RS15810	0.29	-2.2
3,433,325	-		DZA65_RS15810	0.29	+1.3
3,433,347	+		DZA65_RS15810	0.31	-2.0
3,433,348	-		DZA65_RS15810	0.31	+2.3
3,433,369	+		DZA65_RS15810	0.33	+0.3
3,433,369	+		DZA65_RS15810	0.33	-0.2
3,433,369	+		DZA65_RS15810	0.33	-0.5
3,433,369	+		DZA65_RS15810	0.33	-1.3
3,433,369	+		DZA65_RS15810	0.33	-2.0
3,433,370	-		DZA65_RS15810	0.33	+1.8
3,433,370	-		DZA65_RS15810	0.33	+0.0
3,433,370	-		DZA65_RS15810	0.33	+0.3
3,433,441	+		DZA65_RS15810	0.39	+1.1
3,433,441	+		DZA65_RS15810	0.39	+0.3
3,433,441	+		DZA65_RS15810	0.39	-1.0
3,433,442	-		DZA65_RS15810	0.39	-1.1
3,433,442	-		DZA65_RS15810	0.39	+0.6
3,433,442	-		DZA65_RS15810	0.39	-1.5
3,433,442	-		DZA65_RS15810	0.39	-0.2
3,433,528	+		DZA65_RS15810	0.46	-1.0
3,433,528	+		DZA65_RS15810	0.46	+0.3
3,433,528	+		DZA65_RS15810	0.46	-0.2
3,433,528	+		DZA65_RS15810	0.46	-0.7
3,433,528	+		DZA65_RS15810	0.46	-0.5
3,433,528	+		DZA65_RS15810	0.46	-2.2
3,433,528	+		DZA65_RS15810	0.46	+0.8
3,433,528	+		DZA65_RS15810	0.46	+0.0
3,433,529	-		DZA65_RS15810	0.46	-0.7
3,433,529	-		DZA65_RS15810	0.46	-0.2
3,433,529	-		DZA65_RS15810	0.46	+0.3
3,433,529	-		DZA65_RS15810	0.46	-0.6
3,433,529	-		DZA65_RS15810	0.46	-1.0
3,433,529	-		DZA65_RS15810	0.46	+2.2
3,433,782	+		DZA65_RS15810	0.67	-1.0
3,433,783	-		DZA65_RS15810	0.67	-1.5
3,433,783	-		DZA65_RS15810	0.67	-1.3
3,433,783	-		DZA65_RS15810	0.67	+0.3
3,433,783	-		DZA65_RS15810	0.67	-1.0
3,433,813	+		DZA65_RS15810	0.70	-0.8
3,433,814	-		DZA65_RS15810	0.70	-1.0
3,433,885	+		DZA65_RS15810	0.76	-2.5
3,433,885	+		DZA65_RS15810	0.76	-1.1
3,433,886	-		DZA65_RS15810	0.76	+0.5
3,433,886	-		DZA65_RS15810	0.76	-0.2
3,434,031	+		DZA65_RS15810	0.88	+0.8
3,434,053	+		DZA65_RS15810	0.89	-2.6
3,434,053	+		DZA65_RS15810	0.89	-1.0
3,434,053	+		DZA65_RS15810	0.89	-0.5
3,434,053	+		DZA65_RS15810	0.89	-0.2
3,434,053	+		DZA65_RS15810	0.89	-2.3
3,434,054	-		DZA65_RS15810	0.89	+0.8
3,434,054	-		DZA65_RS15810	0.89	+0.3
3,434,054	-		DZA65_RS15810	0.89	+0.8
3,434,054	-		DZA65_RS15810	0.89	-1.2
3,434,055	+		DZA65_RS15810	0.90	-0.1
3,434,055	+		DZA65_RS15810	0.90	+1.8
3,434,055	+		DZA65_RS15810	0.90	-1.3
3,434,055	+		DZA65_RS15810	0.90	-1.3
3,434,055	+		DZA65_RS15810	0.90	-2.0
3,434,055	+		DZA65_RS15810	0.90	+1.1
3,434,055	+		DZA65_RS15810	0.90	+0.8
3,434,055	+		DZA65_RS15810	0.90	-1.2
3,434,056	-		DZA65_RS15810	0.90	-1.0
3,434,056	-		DZA65_RS15810	0.90	-1.0
3,434,056	-		DZA65_RS15810	0.90	-1.1
3,434,056	-		DZA65_RS15810	0.90	-0.6
3,434,056	-		DZA65_RS15810	0.90	+1.8
3,434,116	+				+0.3
3,434,117	-				-0.2
3,434,117	-				-1.6
3,434,117	-				+0.0
3,434,117	-				-0.6
3,434,123	-				-0.5
3,434,123	-				-1.6
3,434,138	+				-1.6
3,434,139	-				-2.0
3,434,164	-				-0.7
3,434,164	-				-0.2
3,434,179	+				-2.2
3,434,179	+				-0.5
3,434,180	-				-0.5
3,434,180	-				-1.3
3,434,180	-				+1.0
3,434,180	-				-0.7
3,434,180	-				+0.3
3,434,180	-				-1.3
3,434,192	+				+0.3
3,434,192	+				-1.2
3,434,192	+				-0.9
3,434,192	+				+0.8
3,434,192	+				+0.8
3,434,192	+				-0.2
3,434,193	-				+0.3
3,434,193	-				-0.3
3,434,193	-				-0.3
3,434,193	-				+0.8
3,434,193	-				+0.1
3,434,193	-				+0.8
3,434,193	-				-0.0
3,434,193	-				-1.3
3,434,323	+		DZA65_RS15815	0.12	-1.2
3,434,323	+		DZA65_RS15815	0.12	+1.8
3,434,323	+		DZA65_RS15815	0.12	-0.2
3,434,323	+		DZA65_RS15815	0.12	-1.0
3,434,323	+		DZA65_RS15815	0.12	-0.5
3,434,323	+		DZA65_RS15815	0.12	-2.9
3,434,324	-		DZA65_RS15815	0.12	-1.6
3,434,324	-		DZA65_RS15815	0.12	+0.6
3,434,324	-		DZA65_RS15815	0.12	-2.3
3,434,324	-		DZA65_RS15815	0.12	-0.2
3,434,324	-		DZA65_RS15815	0.12	-0.7
3,434,324	-		DZA65_RS15815	0.12	-0.5
3,434,324	-		DZA65_RS15815	0.12	-1.6
3,434,328	-		DZA65_RS15815	0.13	+0.8
3,434,328	-		DZA65_RS15815	0.13	+1.8
3,434,338	+		DZA65_RS15815	0.14	-1.2
3,434,339	-		DZA65_RS15815	0.14	-0.5
3,434,549	-		DZA65_RS15815	0.34	-1.2
3,434,587	+		DZA65_RS15815	0.38	-0.6
3,434,587	+		DZA65_RS15815	0.38	-0.3
3,434,588	-		DZA65_RS15815	0.38	-0.2
3,434,588	-		DZA65_RS15815	0.38	+0.1
3,434,683	+		DZA65_RS15815	0.48	-1.5
3,434,696	+		DZA65_RS15815	0.49	+0.3
3,434,747	+		DZA65_RS15815	0.54	-0.1
3,434,747	+		DZA65_RS15815	0.54	-1.0
3,434,748	-		DZA65_RS15815	0.54	-0.2
3,434,779	+		DZA65_RS15815	0.57	-1.0
3,434,779	+		DZA65_RS15815	0.57	-1.5
3,434,779	+		DZA65_RS15815	0.57	-0.5
3,434,780	-		DZA65_RS15815	0.57	-1.2
3,434,829	+		DZA65_RS15815	0.62	+0.8
3,434,829	+		DZA65_RS15815	0.62	-0.2
3,434,829	+		DZA65_RS15815	0.62	-0.5
3,434,829	+		DZA65_RS15815	0.62	+0.5
3,434,829	+		DZA65_RS15815	0.62	-0.6
3,434,829	+		DZA65_RS15815	0.62	-0.2
3,434,829	+		DZA65_RS15815	0.62	+0.1
3,434,830	-		DZA65_RS15815	0.62	-0.5
3,434,830	-		DZA65_RS15815	0.62	+0.3
3,434,830	-		DZA65_RS15815	0.62	-2.5
3,434,833	+		DZA65_RS15815	0.62	-1.2
3,434,833	+		DZA65_RS15815	0.62	-2.0
3,434,833	+		DZA65_RS15815	0.62	-1.0
3,434,833	+		DZA65_RS15815	0.62	-0.2
3,434,833	+		DZA65_RS15815	0.62	+0.8
3,434,834	-		DZA65_RS15815	0.62	-0.6
3,434,834	-		DZA65_RS15815	0.62	-1.9
3,434,893	+		DZA65_RS15815	0.68	+0.8
3,434,918	-		DZA65_RS15815	0.71	-0.2
3,435,014	-		DZA65_RS15815	0.80	-2.2
3,435,032	-		DZA65_RS15815	0.82	+1.3
3,435,032	-		DZA65_RS15815	0.82	+2.1
3,435,059	-		DZA65_RS15815	0.84	+2.4
3,435,161	-				-0.2
3,435,162	+				-1.5
3,435,196	-				-1.9
3,435,196	-				+1.6
3,435,198	+				-0.5
3,435,199	-				-1.5
3,435,199	-				+2.4
3,435,199	-				-1.2
3,435,199	-				+0.1
3,435,202	-				-0.2
3,435,216	-				-0.8
3,435,235	+				-1.7
3,435,240	+				-0.1
3,435,240	+				+1.1
3,435,240	+				+1.0
3,435,240	+				-2.2
3,435,241	-				+0.0
3,435,334	+				-1.7
3,435,335	-				-0.7
3,435,337	-				+0.3
3,435,337	-				-0.7
3,435,370	+				-1.0
3,435,370	+				-1.5
3,435,407	-				+0.4
3,435,423	-				-1.7
3,435,461	+				+0.4
3,435,462	-				-1.0
3,435,462	-				-1.5
3,435,472	+				-1.1
3,435,497	-				-1.0
3,435,499	+				-0.6
3,435,500	-				-1.2
3,435,527	+				+0.8
3,435,560	+				+1.3
3,435,570	-				-3.1
3,435,614	+				-2.2
3,435,709	+				-2.2
3,435,709	+				-1.0
3,435,709	+				-0.2
3,435,776	+		DZA65_RS15820	0.13	-0.7
3,435,777	-		DZA65_RS15820	0.13	+1.1
3,435,792	+		DZA65_RS15820	0.14	-1.6
3,435,792	+		DZA65_RS15820	0.14	+1.3
3,435,808	+		DZA65_RS15820	0.15	+0.8
3,435,808	+		DZA65_RS15820	0.15	-1.6
3,435,809	-		DZA65_RS15820	0.16	-0.5
3,435,809	-		DZA65_RS15820	0.16	-2.7
3,435,882	+		DZA65_RS15820	0.21	-1.0
3,435,883	-		DZA65_RS15820	0.21	-1.5
3,435,886	-		DZA65_RS15820	0.21	-0.5
3,435,886	-		DZA65_RS15820	0.21	-0.2
3,435,886	-		DZA65_RS15820	0.21	+0.8
3,435,886	-		DZA65_RS15820	0.21	-0.2
3,435,886	-		DZA65_RS15820	0.21	-1.2
3,435,886	-		DZA65_RS15820	0.21	-0.2
3,435,886	-		DZA65_RS15820	0.21	-1.0
3,435,886	-		DZA65_RS15820	0.21	+0.0
3,435,888	+		DZA65_RS15820	0.21	-0.3
3,435,889	-		DZA65_RS15820	0.21	-0.3
3,435,889	-		DZA65_RS15820	0.21	-1.3
3,435,889	-		DZA65_RS15820	0.21	-1.5
3,435,889	-		DZA65_RS15820	0.21	+0.1
3,435,889	-		DZA65_RS15820	0.21	-0.6
3,435,929	+		DZA65_RS15820	0.24	+0.8
3,435,930	-		DZA65_RS15820	0.24	-0.5
3,435,937	+		DZA65_RS15820	0.25	-1.3
3,435,937	+		DZA65_RS15820	0.25	-0.5
3,435,937	+		DZA65_RS15820	0.25	-1.2
3,435,937	+		DZA65_RS15820	0.25	+1.3
3,435,937	+		DZA65_RS15820	0.25	-1.2
3,435,938	-		DZA65_RS15820	0.25	-0.7
3,435,938	-		DZA65_RS15820	0.25	-1.3
3,435,938	-		DZA65_RS15820	0.25	-1.5
3,435,938	-		DZA65_RS15820	0.25	-0.5
3,435,938	-		DZA65_RS15820	0.25	-1.5
3,435,938	-		DZA65_RS15820	0.25	-1.4
3,435,938	-		DZA65_RS15820	0.25	-1.2
3,435,938	-		DZA65_RS15820	0.25	+1.6
3,435,987	+		DZA65_RS15820	0.28	-2.1
3,435,988	-		DZA65_RS15820	0.28	-1.2
3,436,045	+		DZA65_RS15820	0.32	-1.7
3,436,046	-		DZA65_RS15820	0.32	-0.5
3,436,046	-		DZA65_RS15820	0.32	-2.3
3,436,046	-		DZA65_RS15820	0.32	+0.3
3,436,059	+		DZA65_RS15820	0.33	-2.2
3,436,060	-		DZA65_RS15820	0.33	-0.7
3,436,060	-		DZA65_RS15820	0.33	+0.8
3,436,089	+		DZA65_RS15820	0.35	-2.0