Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13805

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,962,953	+				+0.1
2,962,953	+				-0.1
2,962,953	+				+2.5
2,962,953	+				-0.6
2,962,953	+				-1.1
2,962,954	-				-0.7
2,962,954	-				-0.9
2,962,954	-				+0.6
2,962,955	+				-0.1
2,962,977	-				-3.3
2,963,007	+				-1.1
2,963,007	+				-1.7
2,963,007	+				+0.3
2,963,007	+				-1.2
2,963,007	+				-0.6
2,963,007	+				-0.7
2,963,007	+				+0.1
2,963,008	-				-0.3
2,963,008	-				+0.9
2,963,008	-				-0.6
2,963,009	+				-0.1
2,963,009	+				-0.7
2,963,009	+				+0.9
2,963,009	+				-0.7
2,963,009	+				-0.7
2,963,010	-				-1.9
2,963,010	-				-1.6
2,963,010	-				-0.6
2,963,010	-				-0.1
2,963,039	+				-1.6
2,963,119	+		DZA65_RS13800	0.15	+0.3
2,963,119	+		DZA65_RS13800	0.15	-1.7
2,963,119	+		DZA65_RS13800	0.15	-0.1
2,963,119	+		DZA65_RS13800	0.15	-1.2
2,963,120	-		DZA65_RS13800	0.15	-1.3
2,963,121	+		DZA65_RS13800	0.15	+1.9
2,963,121	+		DZA65_RS13800	0.15	+0.3
2,963,121	+		DZA65_RS13800	0.15	+0.9
2,963,121	+		DZA65_RS13800	0.15	-0.7
2,963,122	-		DZA65_RS13800	0.16	-2.6
2,963,122	-		DZA65_RS13800	0.16	-0.9
2,963,122	-		DZA65_RS13800	0.16	-1.6
2,963,122	-		DZA65_RS13800	0.16	-1.7
2,963,127	+		DZA65_RS13800	0.16	-3.5
2,963,127	+		DZA65_RS13800	0.16	-1.9
2,963,128	-		DZA65_RS13800	0.17	+0.9
2,963,128	-		DZA65_RS13800	0.17	-1.7
2,963,136	+		DZA65_RS13800	0.18	+0.1
2,963,136	+		DZA65_RS13800	0.18	+1.1
2,963,137	-		DZA65_RS13800	0.18	+0.7
2,963,137	-		DZA65_RS13800	0.18	-1.4
2,963,166	+		DZA65_RS13800	0.23	-1.3
2,963,166	+		DZA65_RS13800	0.23	-0.4
2,963,167	-		DZA65_RS13800	0.23	-1.1
2,963,167	-		DZA65_RS13800	0.23	-1.8
2,963,167	-		DZA65_RS13800	0.23	-0.4
2,963,180	+		DZA65_RS13800	0.25	-0.7
2,963,192	+		DZA65_RS13800	0.27	-1.8
2,963,267	+		DZA65_RS13800	0.38	+0.7
2,963,267	+		DZA65_RS13800	0.38	-1.1
2,963,268	-		DZA65_RS13800	0.38	+0.1
2,963,268	-		DZA65_RS13800	0.38	-0.8
2,963,319	+		DZA65_RS13800	0.46	-0.4
2,963,319	+		DZA65_RS13800	0.46	-0.4
2,963,320	-		DZA65_RS13800	0.47	-1.3
2,963,320	-		DZA65_RS13800	0.47	-0.4
2,963,320	-		DZA65_RS13800	0.47	+0.3
2,963,423	-		DZA65_RS13800	0.63	+0.3
2,963,423	-		DZA65_RS13800	0.63	-2.4
2,963,427	-		DZA65_RS13800	0.63	-0.4
2,963,427	-		DZA65_RS13800	0.63	-1.4
2,963,517	+		DZA65_RS13800	0.77	-0.9
2,963,517	+		DZA65_RS13800	0.77	+0.3
2,963,518	-		DZA65_RS13800	0.78	-0.9
2,963,518	-		DZA65_RS13800	0.78	+0.9
2,963,518	-		DZA65_RS13800	0.78	+0.6
2,963,539	+		DZA65_RS13800	0.81	+1.3
2,963,539	+		DZA65_RS13800	0.81	+0.0
2,963,540	-		DZA65_RS13800	0.81	-1.9
2,963,540	-		DZA65_RS13800	0.81	-0.4
2,963,598	+				-1.5
2,963,598	+				+0.3
2,963,599	-				-0.3
2,963,677	+				-0.4
2,963,678	-				-0.1
2,963,778	+				-0.9
2,963,778	+				+0.3
2,963,779	-				+0.9
2,963,781	+				-0.9
2,963,781	+				-0.1
2,963,781	+				-0.6
2,963,782	-				-0.4
2,963,807	+				-0.1
2,963,809	+				+1.9
2,963,809	+				+0.9
2,963,809	+				-1.4
2,963,810	-				-0.4
2,963,810	-				-1.4
2,963,810	-				-2.4
2,963,956	+				-0.7
2,963,956	+				+0.7
2,963,957	-				-0.7
2,963,993	-				+0.9
2,964,097	-				+0.3
2,964,099	-				-1.3
2,964,116	-				+1.3
2,964,123	-				-1.6
2,964,123	-				+1.3
2,964,123	-				+0.0
2,964,123	-				-1.1
2,964,127	-				-1.1
2,964,218	-				-0.4
2,964,230	+				-0.4
2,964,233	-				+1.3
2,964,288	+				+0.9
2,964,288	+				+0.6
2,964,308	+				-1.6
2,964,326	-				-1.6
2,964,340	-				+1.0
2,964,430	+				+1.9
2,964,430	+				-2.3
2,964,431	-				-1.4
2,964,491	+				-0.9
2,964,491	+				-0.4
2,964,492	-				-1.6
2,964,512	+				+1.2
2,964,552	-		DZA65_RS13810	0.11	-0.7
2,964,552	-		DZA65_RS13810	0.11	-2.1
2,964,567	-		DZA65_RS13810	0.12	-0.7
2,964,599	+		DZA65_RS13810	0.14	+0.9
2,964,600	-		DZA65_RS13810	0.14	-2.4
2,964,600	-		DZA65_RS13810	0.14	-0.1
2,964,605	-		DZA65_RS13810	0.15	-0.4
2,964,605	-		DZA65_RS13810	0.15	+1.5
2,964,655	+		DZA65_RS13810	0.18	+1.1
2,964,655	+		DZA65_RS13810	0.18	-0.1
2,964,656	-		DZA65_RS13810	0.18	+1.9
2,964,657	+		DZA65_RS13810	0.18	-0.1
2,964,659	+		DZA65_RS13810	0.18	-1.8
2,964,659	+		DZA65_RS13810	0.18	+1.3
2,964,659	+		DZA65_RS13810	0.18	-0.1
2,964,689	+		DZA65_RS13810	0.20	+0.3
2,964,689	+		DZA65_RS13810	0.20	-1.3
2,964,691	+		DZA65_RS13810	0.20	-1.8
2,964,691	+		DZA65_RS13810	0.20	+0.5
2,964,691	+		DZA65_RS13810	0.20	+2.9
2,964,691	+		DZA65_RS13810	0.20	+0.2
2,964,691	+		DZA65_RS13810	0.20	+0.1
2,964,691	+		DZA65_RS13810	0.20	-0.1
2,964,691	+		DZA65_RS13810	0.20	-0.0
2,964,692	-		DZA65_RS13810	0.20	-0.1
2,964,707	+		DZA65_RS13810	0.21	-1.1
2,964,717	+		DZA65_RS13810	0.22	-1.1
2,964,746	+		DZA65_RS13810	0.23	-0.9
2,964,746	+		DZA65_RS13810	0.23	+0.9
2,964,810	+		DZA65_RS13810	0.27	-0.1
2,964,810	+		DZA65_RS13810	0.27	-1.1
2,964,811	-		DZA65_RS13810	0.28	-0.4
2,964,838	+		DZA65_RS13810	0.29	+1.1
2,964,858	+		DZA65_RS13810	0.30	-2.1
2,964,858	+		DZA65_RS13810	0.30	+2.3
2,964,859	-		DZA65_RS13810	0.31	+0.4
2,964,859	-		DZA65_RS13810	0.31	+0.3
2,964,864	+		DZA65_RS13810	0.31	-0.4
2,964,864	+		DZA65_RS13810	0.31	+0.3
2,964,864	+		DZA65_RS13810	0.31	+2.2
2,964,864	+		DZA65_RS13810	0.31	-1.1
2,964,864	+		DZA65_RS13810	0.31	-0.3
2,964,865	-		DZA65_RS13810	0.31	+1.9
2,964,865	-		DZA65_RS13810	0.31	+1.3
2,964,865	-		DZA65_RS13810	0.31	-0.1
2,964,865	-				-0.6
2,964,865	-		DZA65_RS13810	0.31	-0.7
2,964,865	-		DZA65_RS13810	0.31	-0.3
2,964,871	+		DZA65_RS13810	0.31	-1.9
2,964,871	+		DZA65_RS13810	0.31	-1.0
2,964,871	+		DZA65_RS13810	0.31	-1.6
2,964,871	+		DZA65_RS13810	0.31	-0.5
2,964,871	+		DZA65_RS13810	0.31	+0.1
2,964,871	+		DZA65_RS13810	0.31	-1.8
2,964,871	+		DZA65_RS13810	0.31	+0.1
2,964,871	+		DZA65_RS13810	0.31	-0.9
2,964,872	-		DZA65_RS13810	0.31	+0.9
2,964,872	-		DZA65_RS13810	0.31	+0.6
2,964,872	-		DZA65_RS13810	0.31	-0.4
2,964,872	-		DZA65_RS13810	0.31	+0.3
2,964,872	-		DZA65_RS13810	0.31	+0.0
2,964,872	-		DZA65_RS13810	0.31	+0.6
2,964,872	-		DZA65_RS13810	0.31	+0.1
2,964,872	-		DZA65_RS13810	0.31	+1.7
2,964,872	-		DZA65_RS13810	0.31	+0.3
2,964,902	+		DZA65_RS13810	0.33	-0.1
2,964,903	-		DZA65_RS13810	0.33	-2.4
2,964,903	-		DZA65_RS13810	0.33	-0.6