Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12635

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,704,458	+		DZA65_RS12625	0.36	+0.1
2,704,471	-		DZA65_RS12625	0.39	+1.4
2,704,479	+		DZA65_RS12625	0.40	+0.5
2,704,480	-		DZA65_RS12625	0.40	+0.7
2,704,480	-		DZA65_RS12625	0.40	-0.6
2,704,498	+		DZA65_RS12625	0.43	-0.1
2,704,500	+		DZA65_RS12625	0.44	+0.7
2,704,500	+		DZA65_RS12625	0.44	+0.7
2,704,500	+		DZA65_RS12625	0.44	-0.1
2,704,500	+		DZA65_RS12625	0.44	-0.6
2,704,500	+		DZA65_RS12625	0.44	-1.3
2,704,501	-		DZA65_RS12625	0.44	-0.6
2,704,501	-		DZA65_RS12625	0.44	-0.9
2,704,501	-		DZA65_RS12625	0.44	-0.9
2,704,501	-		DZA65_RS12625	0.44	-1.9
2,704,506	+		DZA65_RS12625	0.45	+0.1
2,704,507	-		DZA65_RS12625	0.45	-0.3
2,704,611	+				-1.6
2,704,671	+		DZA65_RS12625	0.74	-0.9
2,704,671	+		DZA65_RS12625	0.74	+1.2
2,704,681	-		DZA65_RS12625	0.76	-0.3
2,704,699	+		DZA65_RS12625	0.79	-0.8
2,704,699	+		DZA65_RS12625	0.79	-1.0
2,704,700	-		DZA65_RS12625	0.79	-1.1
2,704,700	-		DZA65_RS12625	0.79	-0.1
2,704,700	-		DZA65_RS12625	0.79	-0.6
2,704,700	-		DZA65_RS12625	0.79	-3.2
2,704,749	+		DZA65_RS12625	0.88	-0.2
2,704,830	+				+0.1
2,704,831	-				+1.7
2,704,834	+				-1.9
2,704,834	+				-3.0
2,704,834	+				-1.2
2,704,834	+				+0.5
2,704,835	-				-0.3
2,704,835	-				-0.3
2,704,835	-				-1.5
2,704,838	+				+2.3
2,704,838	+				+0.7
2,704,838	+				-0.3
2,704,838	+				-0.8
2,704,839	-				+0.4
2,704,839	-				-1.3
2,704,854	-				-1.3
2,704,856	+				-1.3
2,704,856	+				-1.8
2,704,857	-				+1.1
2,704,858	+				+1.4
2,704,858	+				+1.7
2,704,859	-				-2.3
2,704,859	-				-1.3
2,704,867	+				-0.7
2,704,867	+				-1.3
2,704,867	+				+0.1
2,704,868	-				-0.4
2,704,868	-				-0.3
2,704,877	+				-1.1
2,704,877	+				-0.9
2,704,877	+				-0.8
2,704,877	+				-0.1
2,704,877	+				-1.5
2,704,877	+				-2.1
2,704,878	-				-0.9
2,704,878	-				-0.6
2,704,878	-				+0.1
2,704,934	+				-0.6
2,704,999	+				-0.6
2,704,999	+				-0.2
2,704,999	+				-1.5
2,704,999	+				-0.6
2,704,999	+				-0.6
2,704,999	+				-1.3
2,704,999	+				-0.3
2,705,000	-				+0.7
2,705,000	-				+0.1
2,705,000	-				+3.3
2,705,000	-				-1.6
2,705,000	-				-1.3
2,705,000	-				-1.6
2,705,000	-				+1.7
2,705,000	-				-2.0
2,705,000	-				-1.1
2,705,003	+				-1.1
2,705,003	+				-1.3
2,705,004	-				-0.6
2,705,004	-				-1.1
2,705,055	+				+2.3
2,705,055	+		DZA65_RS12630	0.20	+1.7
2,705,055	+		DZA65_RS12630	0.20	-1.3
2,705,056	-		DZA65_RS12630	0.20	-0.3
2,705,056	-		DZA65_RS12630	0.20	+0.7
2,705,056	-		DZA65_RS12630	0.20	+0.7
2,705,056	-		DZA65_RS12630	0.20	-0.1
2,705,056	-				-0.9
2,705,059	+		DZA65_RS12630	0.21	+0.1
2,705,059	+		DZA65_RS12630	0.21	-0.6
2,705,059	+		DZA65_RS12630	0.21	-1.7
2,705,059	+		DZA65_RS12630	0.21	-0.6
2,705,060	-		DZA65_RS12630	0.21	-2.0
2,705,060	-		DZA65_RS12630	0.21	-1.1
2,705,060	-		DZA65_RS12630	0.21	-0.8
2,705,060	-		DZA65_RS12630	0.21	-2.1
2,705,060	-		DZA65_RS12630	0.21	-2.6
2,705,060	-		DZA65_RS12630	0.21	-0.5
2,705,060	-		DZA65_RS12630	0.21	+2.1
2,705,060	-		DZA65_RS12630	0.21	-2.3
2,705,078	+		DZA65_RS12630	0.26	-1.3
2,705,079	-		DZA65_RS12630	0.26	+1.7
2,705,079	-		DZA65_RS12630	0.26	+0.7
2,705,141	+		DZA65_RS12630	0.42	-0.3
2,705,141	+		DZA65_RS12630	0.42	-0.6
2,705,141	+		DZA65_RS12630	0.42	-0.3
2,705,142	-		DZA65_RS12630	0.43	-1.1
2,705,142	-		DZA65_RS12630	0.43	+0.9
2,705,189	+		DZA65_RS12630	0.55	-1.3
2,705,451	+				-0.3
2,705,457	-				-2.2
2,705,678	+		DZA65_RS12635	0.39	-0.3
2,705,678	+		DZA65_RS12635	0.39	+0.7
2,705,678	+		DZA65_RS12635	0.39	-2.0
2,705,679	-		DZA65_RS12635	0.40	+0.3
2,705,681	+		DZA65_RS12635	0.40	+0.8
2,705,681	+		DZA65_RS12635	0.40	-0.6
2,705,681	+		DZA65_RS12635	0.40	-0.6
2,705,681	+		DZA65_RS12635	0.40	-1.6
2,705,681	+		DZA65_RS12635	0.40	+0.7
2,705,681	+		DZA65_RS12635	0.40	+0.1
2,705,681	+		DZA65_RS12635	0.40	-0.7
2,705,682	-		DZA65_RS12635	0.40	-1.3
2,705,682	-		DZA65_RS12635	0.40	-1.1
2,705,682	-		DZA65_RS12635	0.40	+1.1
2,705,682	-		DZA65_RS12635	0.40	-0.3
2,705,682	-		DZA65_RS12635	0.40	-0.3
2,705,682	-		DZA65_RS12635	0.40	-0.2
2,705,742	-		DZA65_RS12635	0.51	+0.1
2,705,742	-		DZA65_RS12635	0.51	-0.5
2,705,954	+		DZA65_RS12635	0.89	-0.4
2,705,984	+				-0.4
2,706,021	-				+1.7
2,706,093	-				-1.9
2,706,259	+				+1.7
2,706,275	-		DZA65_RS12640	0.13	-0.3
2,706,338	-		DZA65_RS12640	0.23	+0.4
2,706,478	-		DZA65_RS12640	0.47	+1.7
2,706,609	+		DZA65_RS12640	0.69	-1.1
2,706,609	+		DZA65_RS12640	0.69	-1.8
2,706,609	+		DZA65_RS12640	0.69	+0.3
2,706,610	-		DZA65_RS12640	0.69	+0.1
2,706,610	-		DZA65_RS12640	0.69	+2.7
2,706,611	+		DZA65_RS12640	0.70	-1.9
2,706,612	-		DZA65_RS12640	0.70	+0.1
2,706,612	-		DZA65_RS12640	0.70	-1.3
2,706,622	-		DZA65_RS12640	0.71	-1.3
2,706,630	+		DZA65_RS12640	0.73	-0.2
2,706,631	-				-1.3
2,706,631	-		DZA65_RS12640	0.73	+1.7
2,706,654	+		DZA65_RS12640	0.77	-0.8
2,706,655	-		DZA65_RS12640	0.77	-1.1
2,706,655	-		DZA65_RS12640	0.77	+0.7
2,706,655	-		DZA65_RS12640	0.77	+1.1
2,706,659	-				-0.1
2,706,684	+		DZA65_RS12640	0.82	+1.4
2,706,685	-		DZA65_RS12640	0.82	-1.0
2,706,685	-		DZA65_RS12640	0.82	-0.6
2,706,687	-		DZA65_RS12640	0.82	-0.3
2,706,707	-		DZA65_RS12640	0.86	-1.2
2,706,731	+		DZA65_RS12640	0.90	-0.3
2,706,731	+		DZA65_RS12640	0.90	+0.9
2,706,732	-				-0.3
2,706,770	+				-0.9
2,706,770	+				+0.7
2,706,771	-				-1.5
2,706,771	-				-0.2
2,706,771	-				-0.9
2,706,772	+				-1.5
2,706,844	-				-0.8
2,706,856	+		DZA65_RS12645	0.10	-0.6
2,706,856	+		DZA65_RS12645	0.10	+0.7
2,706,856	+		DZA65_RS12645	0.10	-0.6
2,706,857	-		DZA65_RS12645	0.10	+0.9
2,706,858	+		DZA65_RS12645	0.11	-2.5
2,706,858	+		DZA65_RS12645	0.11	+0.1
2,706,858	+		DZA65_RS12645	0.11	-0.6
2,706,858	+		DZA65_RS12645	0.11	-2.3
2,706,859	-		DZA65_RS12645	0.11	-0.1
2,706,859	-				-0.9
2,706,859	-		DZA65_RS12645	0.11	-2.6
2,706,868	+		DZA65_RS12645	0.12	-0.5
2,706,869	-		DZA65_RS12645	0.12	-3.0
2,706,869	-				-1.3
2,706,895	+		DZA65_RS12645	0.17	-0.6
2,706,895	+		DZA65_RS12645	0.17	+0.1
2,706,895	+		DZA65_RS12645	0.17	+0.1
2,706,895	+		DZA65_RS12645	0.17	-0.1
2,706,895	+		DZA65_RS12645	0.17	-2.6
2,706,896	-		DZA65_RS12645	0.17	+0.5
2,706,896	-		DZA65_RS12645	0.17	-1.5
2,706,898	-		DZA65_RS12645	0.17	+0.6
2,706,898	-		DZA65_RS12645	0.17	-1.6
2,706,904	-		DZA65_RS12645	0.18	-2.2
2,706,916	+		DZA65_RS12645	0.20	-1.3
2,706,916	+		DZA65_RS12645	0.20	-1.5
2,706,916	+		DZA65_RS12645	0.20	-1.8
2,706,916	+		DZA65_RS12645	0.20	-0.6
2,706,917	-		DZA65_RS12645	0.20	+0.7
2,706,917	-		DZA65_RS12645	0.20	-1.0
2,706,917	-		DZA65_RS12645	0.20	-0.9
2,706,917	-		DZA65_RS12645	0.20	-0.5
2,706,917	-		DZA65_RS12645	0.20	+1.1