Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12295

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,626,197	+		DZA65_RS12290	0.32	-1.3
2,626,197	+		DZA65_RS12290	0.32	-1.3
2,626,197	+		DZA65_RS12290	0.32	-1.1
2,626,198	-		DZA65_RS12290	0.32	+0.7
2,626,198	-		DZA65_RS12290	0.32	-1.6
2,626,198	-		DZA65_RS12290	0.32	-0.1
2,626,410	+		DZA65_RS12290	0.47	-0.6
2,626,411	-		DZA65_RS12290	0.47	+0.1
2,626,504	+		DZA65_RS12290	0.54	-1.3
2,626,505	-		DZA65_RS12290	0.54	-1.6
2,626,516	-		DZA65_RS12290	0.55	-0.3
2,626,624	-		DZA65_RS12290	0.63	-0.6
2,626,624	-		DZA65_RS12290	0.63	-0.9
2,626,686	+		DZA65_RS12290	0.67	+1.0
2,626,686	+		DZA65_RS12290	0.67	-0.6
2,626,686	+		DZA65_RS12290	0.67	-0.3
2,626,686	+		DZA65_RS12290	0.67	-1.3
2,626,686	+		DZA65_RS12290	0.67	+0.5
2,626,687	-		DZA65_RS12290	0.67	+0.1
2,626,687	-		DZA65_RS12290	0.67	-1.5
2,626,687	-				+0.7
2,626,687	-		DZA65_RS12290	0.67	-1.1
2,626,687	-		DZA65_RS12290	0.67	-1.3
2,626,687	-				+0.7
2,626,687	-		DZA65_RS12290	0.67	-0.3
2,626,710	+		DZA65_RS12290	0.69	-2.2
2,626,710	+		DZA65_RS12290	0.69	-1.6
2,626,711	-		DZA65_RS12290	0.69	+0.1
2,626,776	+		DZA65_RS12290	0.74	+0.7
2,626,776	+		DZA65_RS12290	0.74	+1.0
2,626,777	-		DZA65_RS12290	0.74	+0.7
2,626,777	-		DZA65_RS12290	0.74	-0.9
2,626,777	-		DZA65_RS12290	0.74	-1.2
2,626,935	-		DZA65_RS12290	0.85	-1.3
2,626,935	-		DZA65_RS12290	0.85	-1.1
2,626,994	+		DZA65_RS12290	0.89	-1.2
2,626,994	+		DZA65_RS12290	0.89	-1.3
2,626,994	+		DZA65_RS12290	0.89	-1.5
2,626,994	+		DZA65_RS12290	0.89	+3.3
2,626,994	+		DZA65_RS12290	0.89	+0.1
2,626,994	+		DZA65_RS12290	0.89	+0.7
2,626,994	+		DZA65_RS12290	0.89	-2.1
2,626,994	+		DZA65_RS12290	0.89	+0.7
2,626,994	+		DZA65_RS12290	0.89	-1.8
2,626,994	+		DZA65_RS12290	0.89	-0.6
2,626,995	-		DZA65_RS12290	0.90	+0.1
2,626,995	-		DZA65_RS12290	0.90	-0.3
2,626,995	-		DZA65_RS12290	0.90	-1.7
2,626,995	-		DZA65_RS12290	0.90	-1.7
2,626,995	-		DZA65_RS12290	0.90	-0.3
2,626,995	-		DZA65_RS12290	0.90	-2.0
2,627,053	+				-1.6
2,627,053	+				+0.6
2,627,054	-				+0.7
2,627,054	-				-0.5
2,627,054	-				+0.1
2,627,146	-				-1.4
2,627,205	+				-1.3
2,627,244	+				+0.1
2,627,244	+				+0.2
2,627,244	+				+0.3
2,627,244	+				-0.9
2,627,244	+				-1.5
2,627,244	+				+0.3
2,627,244	+				-1.6
2,627,245	-				-0.3
2,627,245	-				+0.1
2,627,292	+		DZA65_RS12295	0.11	-0.9
2,627,298	+		DZA65_RS12295	0.12	-0.3
2,627,299	-		DZA65_RS12295	0.12	-0.6
2,627,456	+		DZA65_RS12295	0.26	-0.9
2,627,456	+		DZA65_RS12295	0.26	+0.7
2,627,456	+		DZA65_RS12295	0.26	-0.3
2,627,456	+		DZA65_RS12295	0.26	-1.0
2,627,456	+		DZA65_RS12295	0.26	-1.8
2,627,457	-		DZA65_RS12295	0.26	-0.2
2,627,457	-		DZA65_RS12295	0.26	+0.1
2,627,457	-		DZA65_RS12295	0.26	+0.1
2,627,460	+		DZA65_RS12295	0.26	+1.2
2,627,461	-		DZA65_RS12295	0.26	-0.2
2,627,461	-		DZA65_RS12295	0.26	-0.3
2,627,501	+		DZA65_RS12295	0.30	-0.5
2,627,523	+		DZA65_RS12295	0.32	+0.1
2,627,523	+		DZA65_RS12295	0.32	-0.3
2,627,523	+		DZA65_RS12295	0.32	-0.2
2,627,524	-		DZA65_RS12295	0.32	-0.6
2,627,524	-		DZA65_RS12295	0.32	-0.3
2,627,524	-		DZA65_RS12295	0.32	-0.6
2,627,524	-		DZA65_RS12295	0.32	+0.3
2,627,524	-		DZA65_RS12295	0.32	+0.2
2,627,524	-		DZA65_RS12295	0.32	+0.0
2,627,524	-		DZA65_RS12295	0.32	-1.3
2,627,524	-		DZA65_RS12295	0.32	-0.3
2,627,524	-		DZA65_RS12295	0.32	+0.3
2,627,524	-		DZA65_RS12295	0.32	-0.7
2,627,561	+		DZA65_RS12295	0.36	-2.0
2,627,562	-		DZA65_RS12295	0.36	+1.2
2,627,757	+		DZA65_RS12295	0.53	-1.3
2,627,757	+		DZA65_RS12295	0.53	-0.5
2,627,757	+		DZA65_RS12295	0.53	-1.3
2,627,758	-		DZA65_RS12295	0.53	-2.5
2,627,758	-		DZA65_RS12295	0.53	-0.5
2,627,797	+		DZA65_RS12295	0.57	+0.1
2,627,884	+		DZA65_RS12295	0.65	+0.1
2,627,939	+		DZA65_RS12295	0.70	-1.1
2,627,939	+		DZA65_RS12295	0.70	-1.9
2,627,939	+		DZA65_RS12295	0.70	-2.7
2,627,939	+		DZA65_RS12295	0.70	-0.9
2,627,939	+		DZA65_RS12295	0.70	-0.5
2,627,939	+		DZA65_RS12295	0.70	+1.0
2,627,939	+		DZA65_RS12295	0.70	-1.1
2,627,939	+		DZA65_RS12295	0.70	-0.6
2,627,939	+		DZA65_RS12295	0.70	+1.4
2,627,940	-		DZA65_RS12295	0.70	+0.1
2,627,940	-		DZA65_RS12295	0.70	-1.9
2,627,940	-		DZA65_RS12295	0.70	-0.6
2,627,940	-		DZA65_RS12295	0.70	-2.5
2,627,940	-		DZA65_RS12295	0.70	-2.7
2,627,940	-		DZA65_RS12295	0.70	+1.7
2,627,940	-		DZA65_RS12295	0.70	-0.6
2,627,942	+		DZA65_RS12295	0.70	+0.1
2,627,942	+		DZA65_RS12295	0.70	-0.2
2,627,942	+		DZA65_RS12295	0.70	+1.7
2,627,943	-		DZA65_RS12295	0.70	+0.1
2,628,012	+		DZA65_RS12295	0.76	-0.6
2,628,012	+		DZA65_RS12295	0.76	-3.6
2,628,013	-		DZA65_RS12295	0.77	-0.7
2,628,013	-		DZA65_RS12295	0.77	+2.3
2,628,013	-		DZA65_RS12295	0.77	-1.9
2,628,013	-		DZA65_RS12295	0.77	-1.1
2,628,013	-		DZA65_RS12295	0.77	+2.0
2,628,024	+		DZA65_RS12295	0.78	+0.4
2,628,025	-		DZA65_RS12295	0.78	-0.7
2,628,025	-		DZA65_RS12295	0.78	-2.1
2,628,112	+		DZA65_RS12295	0.85	-0.6
2,628,375	-				-1.9
2,628,381	+				-1.7
2,628,381	+				-0.6
2,628,381	+				-0.1
2,628,381	+				-0.9
2,628,381	+				-0.2
2,628,381	+				-0.9
2,628,381	+				+0.7
2,628,382	-				-0.9
2,628,382	-				-2.1
2,628,382	-				+1.1
2,628,382	-				-2.8
2,628,382	-				-1.3
2,628,385	+				+0.1
2,628,386	-				+0.9
2,628,404	+				-0.6
2,628,404	+				-0.2
2,628,405	-				+0.0
2,628,419	-				-2.8
2,628,436	+				-1.1
2,628,438	+				+0.7
2,628,438	+				-0.4
2,628,438	+				-0.3
2,628,439	-				-2.0
2,628,439	-				-0.6
2,628,444	+				-1.2
2,628,445	-				+0.1
2,628,445	-				-1.6
2,628,445	-				-1.5
2,628,453	+				-0.6
2,628,455	+				-0.3
2,628,455	+				-0.0
2,628,455	+				-1.9
2,628,455	+				-0.6
2,628,455	+				-0.1
2,628,455	+				-0.3
2,628,455	+				-2.5
2,628,455	+				-0.5
2,628,455	+				-1.5
2,628,456	-				+0.5
2,628,456	-				-0.3
2,628,456	-				-0.3
2,628,467	-				-1.1
2,628,480	-				-1.5
2,628,705	-		DZA65_RS12300	0.28	-0.3
2,628,743	+		DZA65_RS12300	0.34	-0.7
2,628,744	-		DZA65_RS12300	0.34	-1.3
2,628,744	-		DZA65_RS12300	0.34	-0.0
2,628,744	-		DZA65_RS12300	0.34	+1.0
2,628,744	-		DZA65_RS12300	0.34	-1.4
2,628,747	-		DZA65_RS12300	0.35	+0.3
2,628,747	-		DZA65_RS12300	0.35	-1.1
2,628,830	+		DZA65_RS12300	0.47	-0.0
2,628,831	-		DZA65_RS12300	0.47	-1.3
2,628,902	-		DZA65_RS12300	0.58	-0.2
2,628,994	+		DZA65_RS12300	0.71	-0.6
2,628,994	+		DZA65_RS12300	0.71	+0.1
2,628,994	+		DZA65_RS12300	0.71	-0.3
2,628,995	-		DZA65_RS12300	0.71	+1.1
2,629,040	+		DZA65_RS12300	0.78	-0.5
2,629,041	-		DZA65_RS12300	0.78	-1.7
2,629,088	+		DZA65_RS12300	0.85	-3.5
2,629,088	+		DZA65_RS12300	0.85	-0.3
2,629,089	-		DZA65_RS12300	0.85	-0.3
2,629,149	-				-0.9
2,629,149	-				+0.1
2,629,149	-				-1.1
2,629,169	+				+0.1
2,629,169	+				+0.7
2,629,170	-				-0.6
2,629,179	+				+0.1
2,629,180	-				-0.6
2,629,180	-				-1.6
2,629,180	-				+1.7
2,629,180	-				-0.3
2,629,201	+				+0.3
2,629,201	+				-1.5
2,629,201	+				-0.9
2,629,202	-				+0.9
2,629,202	-				-0.6
2,629,221	+				-1.5