Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11180

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,368,392	+		DZA65_RS11170	0.73	+0.2
2,368,392	+		DZA65_RS11170	0.73	+0.3
2,368,392	+		DZA65_RS11170	0.73	+1.7
2,368,393	-		DZA65_RS11170	0.73	-0.3
2,368,423	-		DZA65_RS11170	0.76	-1.7
2,368,429	+		DZA65_RS11170	0.77	-2.7
2,368,429	+		DZA65_RS11170	0.77	+1.7
2,368,429	+		DZA65_RS11170	0.77	-0.3
2,368,551	+				-0.8
2,368,551	+				-1.3
2,368,551	+				-1.5
2,368,551	+				-1.3
2,368,552	-				-0.6
2,368,552	-				+0.7
2,368,652	+				-0.6
2,368,652	+				-0.6
2,368,661	+				+1.0
2,368,708	+				+0.7
2,368,757	+				+0.1
2,368,758	-				+0.3
2,368,758	-				-0.6
2,368,758	-				-0.6
2,368,763	+				-1.8
2,368,763	+				-1.3
2,368,763	+				-1.3
2,368,763	+				+0.3
2,368,763	+				+0.1
2,368,763	+				+0.1
2,368,763	+				+0.7
2,368,763	+				+0.4
2,368,763	+				-0.9
2,368,764	-				+1.1
2,368,764	-				-1.9
2,368,764	-				-0.3
2,368,764	-				-0.7
2,368,764	-				+1.5
2,368,764	-				-0.3
2,368,764	-				+0.1
2,368,764	-				-0.6
2,368,806	+				+0.1
2,368,807	-				+0.5
2,368,807	-				+1.1
2,368,807	-				-1.0
2,368,850	-				+0.1
2,368,903	-				-0.6
2,368,938	+				-1.1
2,368,939	-				-1.1
2,368,943	+				-1.2
2,369,009	+		DZA65_RS11175	0.18	-0.9
2,369,009	+		DZA65_RS11175	0.18	+0.1
2,369,009	+		DZA65_RS11175	0.18	-2.5
2,369,028	+		DZA65_RS11175	0.23	-1.1
2,369,198	+		DZA65_RS11175	0.61	-1.5
2,369,198	+		DZA65_RS11175	0.61	-1.5
2,369,198	+		DZA65_RS11175	0.61	-1.8
2,369,198	+		DZA65_RS11175	0.61	-1.3
2,369,198	+		DZA65_RS11175	0.61	+0.1
2,369,198	+		DZA65_RS11175	0.61	-2.1
2,369,210	+		DZA65_RS11175	0.64	+1.1
2,369,210	+		DZA65_RS11175	0.64	+0.1
2,369,210	+		DZA65_RS11175	0.64	-0.3
2,369,321	-		DZA65_RS11175	0.89	+0.7
2,369,340	+				-0.9
2,369,341	-				-1.2
2,369,362	+				-1.3
2,369,362	+				-1.3
2,369,376	+				-1.1
2,369,377	-				-1.3
2,369,398	-				-1.9
2,369,398	-				-0.6
2,369,458	+		DZA65_RS11180	0.19	+0.1
2,369,459	-		DZA65_RS11180	0.20	-0.3
2,369,473	+		DZA65_RS11180	0.23	-0.2
2,369,473	+		DZA65_RS11180	0.23	-0.5
2,369,473	+		DZA65_RS11180	0.23	-0.3
2,369,474	-		DZA65_RS11180	0.23	+1.0
2,369,475	+		DZA65_RS11180	0.23	-1.9
2,369,475	+		DZA65_RS11180	0.23	-2.3
2,369,475	+		DZA65_RS11180	0.23	-0.3
2,369,475	+		DZA65_RS11180	0.23	-1.9
2,369,475	+		DZA65_RS11180	0.23	-0.3
2,369,475	+		DZA65_RS11180	0.23	-1.8
2,369,475	+		DZA65_RS11180	0.23	-2.2
2,369,476	-		DZA65_RS11180	0.23	-1.9
2,369,476	-		DZA65_RS11180	0.23	-1.1
2,369,476	-		DZA65_RS11180	0.23	-1.5
2,369,518	+		DZA65_RS11180	0.32	+0.1
2,369,518	+		DZA65_RS11180	0.32	-1.6
2,369,519	-		DZA65_RS11180	0.32	-0.6
2,369,519	-		DZA65_RS11180	0.32	-1.3
2,369,550	+		DZA65_RS11180	0.39	-0.9
2,369,550	+		DZA65_RS11180	0.39	+0.3
2,369,551	-		DZA65_RS11180	0.39	-0.9
2,369,551	-		DZA65_RS11180	0.39	-0.9
2,369,552	+		DZA65_RS11180	0.39	+0.7
2,369,552	+		DZA65_RS11180	0.39	+0.1
2,369,553	-		DZA65_RS11180	0.39	+0.7
2,369,564	+		DZA65_RS11180	0.42	+0.1
2,369,565	-		DZA65_RS11180	0.42	-1.3
2,369,565	-		DZA65_RS11180	0.42	-2.1
2,369,585	+		DZA65_RS11180	0.46	-1.0
2,369,586	-		DZA65_RS11180	0.46	+1.1
2,369,600	+		DZA65_RS11180	0.49	+0.0
2,369,658	+		DZA65_RS11180	0.62	+1.3
2,369,659	-		DZA65_RS11180	0.62	-0.5
2,369,732	+		DZA65_RS11180	0.77	-2.4
2,369,732	+		DZA65_RS11180	0.77	+0.7
2,369,733	-		DZA65_RS11180	0.78	-1.1
2,369,736	+		DZA65_RS11180	0.78	-0.3
2,369,736	+		DZA65_RS11180	0.78	+0.2
2,369,842	+				-0.6
2,369,842	+				-0.1
2,369,843	-				-1.8
2,369,843	-				-1.8
2,369,843	-				+0.1
2,369,885	-		DZA65_RS22885	0.15	+1.4
2,369,903	-		DZA65_RS22885	0.21	+2.7
2,369,944	+		DZA65_RS22885	0.35	-2.1
2,369,945	-		DZA65_RS22885	0.35	-2.0
2,369,945	-		DZA65_RS22885	0.35	-0.7
2,369,982	-		DZA65_RS22885	0.48	-0.3
2,369,984	+		DZA65_RS22885	0.49	-2.7
2,369,984	+		DZA65_RS22885	0.49	-0.3
2,369,984	+		DZA65_RS22885	0.49	-0.3
2,370,001	+		DZA65_RS22885	0.55	-1.5
2,370,001	+		DZA65_RS22885	0.55	+0.4
2,370,001	+		DZA65_RS22885	0.55	-1.1
2,370,001	+		DZA65_RS22885	0.55	-0.9
2,370,002	-		DZA65_RS22885	0.55	-3.2
2,370,002	-		DZA65_RS22885	0.55	-0.9
2,370,002	-		DZA65_RS22885	0.55	-0.3
2,370,002	-		DZA65_RS22885	0.55	+0.5
2,370,002	-		DZA65_RS22885	0.55	-1.8
2,370,031	+		DZA65_RS22885	0.65	-1.5
2,370,046	-		DZA65_RS22885	0.70	+0.4
2,370,046	-		DZA65_RS22885	0.70	-0.9
2,370,129	-				-1.1
2,370,129	-				+0.1
2,370,145	+				-0.6
2,370,145	+				-0.6
2,370,145	+				-1.1
2,370,146	-				-0.3
2,370,146	-				-1.3
2,370,146	-				-1.5
2,370,146	-				+0.2
2,370,151	-				-1.3
2,370,162	+				-1.2
2,370,162	+				-0.3
2,370,176	+				-1.8
2,370,177	-				-1.6
2,370,226	+				-1.5
2,370,238	+				-0.2
2,370,346	-				-1.4
2,370,346	-				+2.4
2,370,400	+				-1.5
2,370,401	-				+1.1
2,370,401	-				-0.3
2,370,411	+				-0.3
2,370,411	+				-0.3
2,370,411	+				-1.5
2,370,411	+				+0.1
2,370,455	-				+0.7
2,370,455	-				+0.2
2,370,456	+				+0.3
2,370,456	+				-0.3
2,370,457	-				+0.1
2,370,461	+				-0.9
2,370,461	+				-0.9
2,370,462	-				-0.0
2,370,462	-				-1.3
2,370,508	+				+1.1
2,370,533	-				-1.1
2,370,587	+				-0.6
2,370,588	-				-0.7
2,370,602	+				+1.7
2,370,603	-				-1.1
2,370,603	-				-1.1
2,370,619	+		DZA65_RS11185	0.11	+0.1