Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10575

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,241,779	+		DZA65_RS10570	0.51	-0.5
2,241,780	-		DZA65_RS10570	0.51	-1.9
2,241,780	-		DZA65_RS10570	0.51	+0.1
2,241,780	-		DZA65_RS10570	0.51	-0.3
2,241,868	+		DZA65_RS10570	0.57	-1.7
2,241,868	+		DZA65_RS10570	0.57	-0.7
2,241,868	+		DZA65_RS10570	0.57	-0.3
2,241,868	+		DZA65_RS10570	0.57	-1.3
2,241,868	+		DZA65_RS10570	0.57	-0.9
2,241,869	-		DZA65_RS10570	0.57	-0.3
2,241,869	-		DZA65_RS10570	0.57	-1.7
2,242,145	-		DZA65_RS10570	0.76	-1.7
2,242,328	+		DZA65_RS10570	0.89	-0.7
2,242,328	+		DZA65_RS10570	0.89	-0.8
2,242,359	-				-0.4
2,242,383	+				+0.3
2,242,418	+				-2.4
2,242,419	-				+1.3
2,242,486	+				+0.7
2,242,486	+				-2.7
2,242,486	+				-0.3
2,242,486	+				+1.1
2,242,486	+				-1.4
2,242,486	+				+0.2
2,242,486	+				+0.1
2,242,486	+				+1.7
2,242,486	+				-0.7
2,242,486	+				-1.3
2,242,486	+				-3.2
2,242,487	-				-0.9
2,242,487	-				-0.5
2,242,487	-				-0.9
2,242,487	-				-0.8
2,242,487	-				-0.7
2,242,487	-				-0.9
2,242,487	-				+0.7
2,242,488	+				+0.1
2,242,488	+				-0.5
2,242,488	+				+1.7
2,242,489	-				+0.1
2,242,489	-				-0.3
2,242,489	-				-0.2
2,242,516	+				+1.1
2,242,516	+				-1.3
2,242,517	-				-1.8
2,242,517	-				-0.3
2,242,561	+				-0.1
2,242,561	+				-0.3
2,242,561	+				+0.7
2,242,561	+				-0.3
2,242,561	+				-0.7
2,242,561	+				-2.1
2,242,561	+				+0.4
2,242,561	+				+0.1
2,242,561	+				+0.7
2,242,561	+				-0.2
2,242,561	+				-0.6
2,242,561	+				-1.5
2,242,561	+				-0.9
2,242,561	+				-2.1
2,242,561	+				+1.1
2,242,561	+				-1.9
2,242,561	+				+1.0
2,242,561	+				-0.9
2,242,561	+				-2.0
2,242,561	+				+0.2
2,242,561	+				-0.7
2,242,561	+				-0.5
2,242,561	+				-0.7
2,242,562	-				+0.0
2,242,562	-				-0.2
2,242,562	-				-1.1
2,242,562	-				-0.7
2,242,562	-				-0.9
2,242,562	-				-0.1
2,242,562	-				-1.3
2,242,562	-				+0.4
2,242,562	-				-1.5
2,242,565	+				-0.5
2,242,565	+				-1.5
2,242,565	+				-0.7
2,242,565	+				-1.1
2,242,565	+				-0.7
2,242,565	+				-2.3
2,242,565	+				-1.3
2,242,565	+				+1.0
2,242,565	+				-0.7
2,242,565	+				-1.9
2,242,565	+				-1.9
2,242,565	+				-0.7
2,242,566	-				-1.2
2,242,566	-				-2.0
2,242,566	-				-0.9
2,242,566	-				+0.1
2,242,566	-				-0.7
2,242,566	-				-0.1
2,242,566	-				+0.9
2,242,590	+				-0.2
2,242,590	+				+0.9
2,242,616	+				+2.0
2,242,617	-				+0.7
2,242,617	-				+1.7
2,242,617	-				-0.3
2,242,617	-				-0.9
2,242,617	-				-0.1
2,242,672	+				-2.6
2,242,672	+				-2.2
2,242,672	+				+0.1
2,242,672	+				-1.7
2,242,673	-				+0.1
2,242,674	+				-1.0
2,242,674	+				-1.3
2,242,674	+				-1.3
2,242,675	-				-1.5
2,242,679	+				-1.8
2,242,679	+				+1.7
2,242,679	+				-0.9
2,242,679	+				-0.4
2,242,679	+				-1.8
2,242,679	+				-0.9
2,242,679	+				-1.5
2,242,679	+				+0.7
2,242,679	+				-1.0
2,242,680	-				-0.7
2,242,680	-				-0.3
2,242,680	-				+1.2
2,242,680	-				-1.0
2,242,680	-				-0.7
2,242,680	-				-1.8
2,242,680	-				+0.9
2,242,680	-				-0.3
2,242,680	-				-1.5
2,242,680	-				+1.3
2,242,683	+				-0.4
2,242,684	-				+0.7
2,242,687	+				+1.1
2,242,687	+				-0.3
2,242,687	+				-0.7
2,242,688	-				+2.2
2,242,789	+		DZA65_RS10575	0.12	-1.3
2,242,790	-		DZA65_RS10575	0.12	+0.7
2,242,790	-		DZA65_RS10575	0.12	+1.1
2,242,803	-		DZA65_RS10575	0.14	+0.7
2,242,821	-		DZA65_RS10575	0.16	+1.4
2,242,851	+		DZA65_RS10575	0.19	-1.0
2,242,851	+		DZA65_RS10575	0.19	+0.7
2,242,851	+		DZA65_RS10575	0.19	-1.1
2,242,851	+		DZA65_RS10575	0.19	-1.5
2,242,851	+		DZA65_RS10575	0.19	-1.5
2,242,851	+		DZA65_RS10575	0.19	-1.7
2,242,852	-		DZA65_RS10575	0.20	-1.7
2,242,927	+		DZA65_RS10575	0.28	-0.9
2,242,927	+		DZA65_RS10575	0.28	+0.7
2,242,927	+		DZA65_RS10575	0.28	-2.0
2,242,927	+		DZA65_RS10575	0.28	-0.5
2,242,927	+		DZA65_RS10575	0.28	+0.3
2,242,928	-		DZA65_RS10575	0.28	-0.3
2,242,928	-		DZA65_RS10575	0.28	+0.7
2,242,928	-		DZA65_RS10575	0.28	-0.3
2,243,076	+		DZA65_RS10575	0.45	-1.5
2,243,076	+		DZA65_RS10575	0.45	-0.9
2,243,089	+		DZA65_RS10575	0.47	-0.9
2,243,200	+		DZA65_RS10575	0.60	+0.1
2,243,271	+		DZA65_RS10575	0.68	-2.1
2,243,272	-		DZA65_RS10575	0.68	+0.1
2,243,272	-		DZA65_RS10575	0.68	-0.3
2,243,313	+		DZA65_RS10575	0.73	-0.3
2,243,313	+		DZA65_RS10575	0.73	-0.9
2,243,313	+		DZA65_RS10575	0.73	+3.7
2,243,314	-		DZA65_RS10575	0.73	-0.1
2,243,455	+		DZA65_RS10575	0.89	-0.0
2,243,456	-		DZA65_RS10575	0.89	-0.3
2,243,545	+				-0.7
2,243,552	-				-3.0
2,243,567	+				-2.1
2,243,567	+				+1.1
2,243,567	+				-0.0
2,243,567	+				+0.1
2,243,567	+				-1.1
2,243,568	-				+0.4
2,243,568	-				-0.2
2,243,568	-				-0.8
2,243,568	-				-0.9
2,243,573	-				+0.1
2,243,618	+				-1.9
2,243,619	-				-1.3
2,243,619	-				+0.3
2,243,620	+				-2.6
2,243,620	+				-1.2
2,243,620	+				+0.3
2,243,621	-				-1.1
2,243,621	-				-0.5
2,243,621	-				-0.9
2,243,621	-				-0.7
2,243,621	-				-1.2
2,243,621	-				-0.7
2,243,623	+				+2.4
2,243,624	-				-0.9
2,243,624	-				-0.6
2,243,624	-				-2.8
2,243,685	-				+2.9
2,243,713	-				-1.8
2,243,713	-				-0.7
2,243,785	+				+1.7
2,243,786	-				-0.7
2,243,871	-				-2.1
2,244,006	+				+0.2
2,244,006	+				-0.3
2,244,007	-				-1.2
2,244,007	-				-1.3
2,244,007	-				-1.8
2,244,007	-				-1.2
2,244,030	-				-0.2
2,244,087	+		DZA65_RS10580	0.12	-1.2
2,244,087	+		DZA65_RS10580	0.12	+1.5
2,244,087	+		DZA65_RS10580	0.12	+0.2
2,244,087	+		DZA65_RS10580	0.12	-0.3
2,244,087	+		DZA65_RS10580	0.12	+1.1
2,244,087	+		DZA65_RS10580	0.12	-0.3
2,244,087	+		DZA65_RS10580	0.12	-1.6
2,244,088	-		DZA65_RS10580	0.12	+0.1
2,244,088	-		DZA65_RS10580	0.12	-0.3
2,244,088	-		DZA65_RS10580	0.12	-0.7
2,244,088	-		DZA65_RS10580	0.12	-1.5
2,244,088	-		DZA65_RS10580	0.12	-1.3
2,244,088	-		DZA65_RS10580	0.12	-1.9
2,244,088	-		DZA65_RS10580	0.12	-0.3
2,244,088	-		DZA65_RS10580	0.12	-0.7
2,244,088	-		DZA65_RS10580	0.12	+0.7
2,244,088	-		DZA65_RS10580	0.12	-3.7
2,244,088	-		DZA65_RS10580	0.12	-1.5
2,244,088	-		DZA65_RS10580	0.12	-4.8
2,244,088	-		DZA65_RS10580	0.12	-0.7
2,244,088	-		DZA65_RS10580	0.12	-1.7
2,244,088	-		DZA65_RS10580	0.12	-0.7
2,244,088	-		DZA65_RS10580	0.12	-2.3
2,244,089	+		DZA65_RS10580	0.12	-1.2
2,244,089	+		DZA65_RS10580	0.12	+0.7
2,244,090	-		DZA65_RS10580	0.12	+0.1
2,244,165	-		DZA65_RS10580	0.17	-2.2
2,244,261	+		DZA65_RS10580	0.23	+0.7
2,244,447	+		DZA65_RS10580	0.36	-0.5
2,244,447	+		DZA65_RS10580	0.36	+0.3
2,244,448	-		DZA65_RS10580	0.36	+0.1
2,244,448	-		DZA65_RS10580	0.36	-2.8
2,244,549	-		DZA65_RS10580	0.43	-0.7