Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09625

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,023,997	+				-0.1
2,024,144	+		DZA65_RS09615	0.49	-1.0
2,024,145	-		DZA65_RS09615	0.49	+0.9
2,024,145	-		DZA65_RS09615	0.49	+0.0
2,024,145	-				-1.7
2,024,199	+		DZA65_RS09615	0.72	-3.4
2,024,200	-		DZA65_RS09615	0.72	-0.4
2,024,200	-		DZA65_RS09615	0.72	-2.1
2,024,200	-		DZA65_RS09615	0.72	-0.2
2,024,200	-				-1.0
2,024,228	+				-1.0
2,024,228	+		DZA65_RS09615	0.84	-1.5
2,024,228	+		DZA65_RS09615	0.84	-1.1
2,024,229	-		DZA65_RS09615	0.84	-1.0
2,024,229	-		DZA65_RS09615	0.84	-0.0
2,024,229	-		DZA65_RS09615	0.84	+0.0
2,024,229	-		DZA65_RS09615	0.84	+1.6
2,024,251	+				-0.8
2,024,252	-				+0.0
2,024,322	-		DZA65_RS09620	0.10	-1.2
2,024,338	+		DZA65_RS09620	0.13	-2.3
2,024,338	+		DZA65_RS09620	0.13	-2.5
2,024,338	+		DZA65_RS09620	0.13	+0.0
2,024,339	-		DZA65_RS09620	0.13	+0.6
2,024,339	-		DZA65_RS09620	0.13	-3.0
2,024,339	-		DZA65_RS09620	0.13	+1.0
2,024,339	-		DZA65_RS09620	0.13	-1.2
2,024,538	+		DZA65_RS09620	0.39	-0.7
2,024,538	+		DZA65_RS09620	0.39	-2.6
2,024,538	+		DZA65_RS09620	0.39	-0.7
2,024,538	+		DZA65_RS09620	0.39	-1.5
2,024,538	+				+0.4
2,024,538	+		DZA65_RS09620	0.39	-0.7
2,024,539	-		DZA65_RS09620	0.39	-0.7
2,024,539	-		DZA65_RS09620	0.39	-1.5
2,024,559	-		DZA65_RS09620	0.42	-0.1
2,024,559	-		DZA65_RS09620	0.42	+0.0
2,024,560	-		DZA65_RS09620	0.42	-1.2
2,024,637	+		DZA65_RS09620	0.53	-1.7
2,024,719	+		DZA65_RS09620	0.64	+0.0
2,024,720	-		DZA65_RS09620	0.64	+0.6
2,024,784	-				-1.4
2,024,947	+				-0.5
2,024,947	+				-1.2
2,024,948	-				-0.4
2,024,959	+				+1.6
2,024,959	+				+0.4
2,024,959	+				+0.6
2,024,959	+				-0.7
2,024,959	+				-1.5
2,024,959	+				-1.5
2,024,959	+				-1.8
2,024,959	+				-0.9
2,024,959	+				-1.2
2,024,959	+				-0.2
2,024,959	+				+1.1
2,024,960	-				+0.4
2,024,960	-				-0.1
2,024,960	-				-1.7
2,024,960	-				-0.7
2,024,960	-				-0.7
2,024,960	-				-1.5
2,024,960	-				-0.4
2,024,960	-				+0.6
2,024,960	-				-1.1
2,024,960	-				-1.0
2,024,960	-				+1.2
2,024,960	-				+0.6
2,024,960	-				-2.6
2,024,960	-				-0.4
2,025,103	+		DZA65_RS09625	0.11	-1.0
2,025,103	+		DZA65_RS09625	0.11	+0.2
2,025,103	+		DZA65_RS09625	0.11	-2.3
2,025,103	+		DZA65_RS09625	0.11	-0.8
2,025,103	+		DZA65_RS09625	0.11	+0.0
2,025,104	-		DZA65_RS09625	0.11	-0.7
2,025,104	-		DZA65_RS09625	0.11	-1.2
2,025,263	+		DZA65_RS09625	0.26	+0.2
2,025,263	+		DZA65_RS09625	0.26	-0.4
2,025,263	+		DZA65_RS09625	0.26	+0.6
2,025,263	+		DZA65_RS09625	0.26	+2.6
2,025,263	+		DZA65_RS09625	0.26	-1.7
2,025,263	+		DZA65_RS09625	0.26	+1.3
2,025,263	+		DZA65_RS09625	0.26	+0.2
2,025,263	+		DZA65_RS09625	0.26	+0.0
2,025,263	+		DZA65_RS09625	0.26	-1.3
2,025,263	+		DZA65_RS09625	0.26	-0.2
2,025,263	+		DZA65_RS09625	0.26	+0.6
2,025,263	+		DZA65_RS09625	0.26	-2.4
2,025,264	-		DZA65_RS09625	0.26	-1.2
2,025,264	-		DZA65_RS09625	0.26	+0.6
2,025,264	-		DZA65_RS09625	0.26	-1.5
2,025,264	-		DZA65_RS09625	0.26	-1.2
2,025,264	-		DZA65_RS09625	0.26	-0.7
2,025,264	-		DZA65_RS09625	0.26	-0.1
2,025,264	-		DZA65_RS09625	0.26	-2.5
2,025,264	-		DZA65_RS09625	0.26	-1.8
2,025,264	-		DZA65_RS09625	0.26	+0.0
2,025,264	-		DZA65_RS09625	0.26	-1.4
2,025,320	+		DZA65_RS09625	0.31	+0.9
2,025,320	+		DZA65_RS09625	0.31	-1.0
2,025,320	+		DZA65_RS09625	0.31	-1.0
2,025,320	+		DZA65_RS09625	0.31	+0.0
2,025,320	+		DZA65_RS09625	0.31	-0.7
2,025,320	+		DZA65_RS09625	0.31	-1.0
2,025,320	+		DZA65_RS09625	0.31	-2.6
2,025,320	+		DZA65_RS09625	0.31	-1.2
2,025,321	-		DZA65_RS09625	0.31	-0.7
2,025,355	+		DZA65_RS09625	0.34	-0.1
2,025,355	+		DZA65_RS09625	0.34	-0.4
2,025,356	-		DZA65_RS09625	0.34	-1.2
2,025,359	-		DZA65_RS09625	0.35	-1.6
2,025,359	-		DZA65_RS09625	0.35	-0.4
2,025,359	-		DZA65_RS09625	0.35	+1.6
2,025,427	+		DZA65_RS09625	0.41	-1.0
2,025,476	+		DZA65_RS09625	0.46	-1.2
2,025,476	+		DZA65_RS09625	0.46	-1.4
2,025,476	+		DZA65_RS09625	0.46	-2.1
2,025,477	-		DZA65_RS09625	0.46	-1.6
2,025,477	-		DZA65_RS09625	0.46	+0.3
2,025,477	-		DZA65_RS09625	0.46	-1.2
2,025,477	-		DZA65_RS09625	0.46	+0.6
2,025,500	+		DZA65_RS09625	0.48	-0.7
2,025,500	+		DZA65_RS09625	0.48	-1.9
2,025,500	+		DZA65_RS09625	0.48	+0.6
2,025,500	+		DZA65_RS09625	0.48	+0.6
2,025,500	+		DZA65_RS09625	0.48	-0.4
2,025,500	+		DZA65_RS09625	0.48	-1.5
2,025,501	-		DZA65_RS09625	0.48	+0.0
2,025,501	-		DZA65_RS09625	0.48	-1.5
2,025,501	-		DZA65_RS09625	0.48	+0.3
2,025,501	-		DZA65_RS09625	0.48	-1.0
2,025,501	-		DZA65_RS09625	0.48	+1.0
2,025,501	-		DZA65_RS09625	0.48	-0.8
2,025,501	-		DZA65_RS09625	0.48	-0.2
2,025,519	-		DZA65_RS09625	0.50	+0.6
2,025,553	+		DZA65_RS09625	0.53	-1.2
2,025,674	+		DZA65_RS09625	0.64	-0.1
2,025,675	-		DZA65_RS09625	0.64	-1.4
2,025,675	-		DZA65_RS09625	0.64	-1.4
2,025,675	-				-0.5
2,025,689	+		DZA65_RS09625	0.65	+1.1
2,025,689	+		DZA65_RS09625	0.65	+0.6
2,025,690	-		DZA65_RS09625	0.65	-1.7
2,025,694	+		DZA65_RS09625	0.66	+0.5
2,025,695	-		DZA65_RS09625	0.66	-0.7
2,025,716	-		DZA65_RS09625	0.68	-2.4
2,025,759	+		DZA65_RS09625	0.72	-1.0
2,025,759	+		DZA65_RS09625	0.72	-0.7
2,025,759	+		DZA65_RS09625	0.72	-0.7
2,025,759	+		DZA65_RS09625	0.72	-1.6
2,025,760	-		DZA65_RS09625	0.72	-2.6
2,025,760	-		DZA65_RS09625	0.72	-0.1
2,025,760	-		DZA65_RS09625	0.72	-0.7
2,025,760	-		DZA65_RS09625	0.72	-1.5
2,025,760	-		DZA65_RS09625	0.72	-2.0
2,025,760	-		DZA65_RS09625	0.72	+0.0
2,025,824	+		DZA65_RS09625	0.78	-0.4
2,025,824	+		DZA65_RS09625	0.78	-1.2
2,025,825	-		DZA65_RS09625	0.78	+1.6
2,025,827	+		DZA65_RS09625	0.78	-2.8
2,025,827	+		DZA65_RS09625	0.78	-0.4
2,025,827	+		DZA65_RS09625	0.78	+0.6
2,025,827	+		DZA65_RS09625	0.78	-1.0
2,025,827	+		DZA65_RS09625	0.78	-0.4
2,025,827	+		DZA65_RS09625	0.78	+0.0
2,025,827	+		DZA65_RS09625	0.78	-0.5
2,025,828	-		DZA65_RS09625	0.78	-1.4
2,025,828	-		DZA65_RS09625	0.78	-2.0
2,025,904	+		DZA65_RS09625	0.85	+0.0
2,025,904	+		DZA65_RS09625	0.85	-0.7
2,025,904	+		DZA65_RS09625	0.85	+0.6
2,025,905	-		DZA65_RS09625	0.85	-1.4
2,025,963	-				+0.0
2,026,083	+				-1.4
2,026,083	+				-1.4
2,026,083	+				+0.3
2,026,084	-				+0.0
2,026,137	+				+0.3
2,026,137	+				-2.3
2,026,137	+				-1.2
2,026,137	+				-1.0
2,026,138	-				-0.4
2,026,138	-				+0.0
2,026,138	-				-2.2
2,026,138	-				-2.0
2,026,140	+				+0.6
2,026,141	-				-2.0
2,026,250	-		DZA65_RS09630	0.18	-1.2
2,026,251	+		DZA65_RS09630	0.18	+0.6
2,026,251	+		DZA65_RS09630	0.18	+0.1
2,026,251	+		DZA65_RS09630	0.18	+0.0
2,026,251	+		DZA65_RS09630	0.18	-2.1
2,026,251	+		DZA65_RS09630	0.18	+0.0
2,026,252	-		DZA65_RS09630	0.19	-0.7
2,026,252	-		DZA65_RS09630	0.19	+0.6
2,026,252	-		DZA65_RS09630	0.19	+0.0
2,026,278	+		DZA65_RS09630	0.21	-2.8
2,026,365	+		DZA65_RS09630	0.30	-2.1
2,026,366	-		DZA65_RS09630	0.30	+0.4
2,026,437	+		DZA65_RS09630	0.37	-1.0
2,026,437	+		DZA65_RS09630	0.37	-0.7
2,026,437	+		DZA65_RS09630	0.37	-1.0
2,026,437	+		DZA65_RS09630	0.37	+1.0
2,026,437	+		DZA65_RS09630	0.37	-0.7
2,026,437	+		DZA65_RS09630	0.37	-1.0
2,026,437	+		DZA65_RS09630	0.37	+0.6
2,026,438	-		DZA65_RS09630	0.37	-0.4
2,026,468	+		DZA65_RS09630	0.40	-0.7
2,026,468	+		DZA65_RS09630	0.40	-1.0
2,026,468	+		DZA65_RS09630	0.40	-0.4
2,026,468	+		DZA65_RS09630	0.40	-1.0
2,026,468	+		DZA65_RS09630	0.40	-0.3
2,026,468	+		DZA65_RS09630	0.40	-1.8
2,026,468	+		DZA65_RS09630	0.40	-1.8
2,026,468	+		DZA65_RS09630	0.40	+1.6
2,026,469	-		DZA65_RS09630	0.40	+1.6
2,026,469	-		DZA65_RS09630	0.40	-0.4
2,026,469	-		DZA65_RS09630	0.40	-0.4
2,026,469	-		DZA65_RS09630	0.40	-1.0
2,026,469	-		DZA65_RS09630	0.40	-1.7
2,026,469	-		DZA65_RS09630	0.40	-0.6
2,026,469	-		DZA65_RS09630	0.40	-1.2
2,026,470	+		DZA65_RS09630	0.40	+0.0
2,026,470	+		DZA65_RS09630	0.40	-1.7
2,026,470	+		DZA65_RS09630	0.40	-0.8
2,026,470	+		DZA65_RS09630	0.40	-1.6
2,026,470	+		DZA65_RS09630	0.40	-0.2
2,026,470	+		DZA65_RS09630	0.40	+2.6
2,026,470	+		DZA65_RS09630	0.40	-3.5
2,026,470	+		DZA65_RS09630	0.40	-1.6
2,026,470	+		DZA65_RS09630	0.40	+0.2
2,026,470	+		DZA65_RS09630	0.40	-0.2
2,026,470	+		DZA65_RS09630	0.40	-0.1
2,026,470	+		DZA65_RS09630	0.40	-1.2
2,026,470	+		DZA65_RS09630	0.40	-0.8
2,026,470	+		DZA65_RS09630	0.40	-0.6
2,026,471	-		DZA65_RS09630	0.41	-1.7
2,026,471	-		DZA65_RS09630	0.41	-2.0
2,026,471	-		DZA65_RS09630	0.41	+1.0
2,026,471	-		DZA65_RS09630	0.41	-1.8
2,026,471	-		DZA65_RS09630	0.41	+0.0
2,026,471	-		DZA65_RS09630	0.41	+0.0
2,026,471	-		DZA65_RS09630	0.41	-0.7
2,026,471	-		DZA65_RS09630	0.41	-1.2
2,026,471	-		DZA65_RS09630	0.41	-1.2
2,026,471	-		DZA65_RS09630	0.41	-1.0
2,026,471	-		DZA65_RS09630	0.41	-1.5
2,026,471	-		DZA65_RS09630	0.41	-0.7
2,026,471	-		DZA65_RS09630	0.41	-1.7
2,026,471	-		DZA65_RS09630	0.41	-0.3
2,026,471	-		DZA65_RS09630	0.41	-1.2
2,026,588	+		DZA65_RS09630	0.52	-1.8
2,026,588	+		DZA65_RS09630	0.52	-2.5
2,026,588	+		DZA65_RS09630	0.52	-2.0
2,026,588	+		DZA65_RS09630	0.52	-2.2
2,026,589	-		DZA65_RS09630	0.52	-0.4
2,026,589	-		DZA65_RS09630	0.52	-2.2
2,026,589	-		DZA65_RS09630	0.52	-1.5
2,026,589	-		DZA65_RS09630	0.52	-2.5
2,026,611	+		DZA65_RS09630	0.55	-0.9
2,026,611	+		DZA65_RS09630	0.55	+1.6
2,026,611	+		DZA65_RS09630	0.55	-2.6
2,026,612	-		DZA65_RS09630	0.55	-1.4
2,026,617	+		DZA65_RS09630	0.55	-1.2
2,026,617	+		DZA65_RS09630	0.55	+0.6
2,026,617	+		DZA65_RS09630	0.55	-0.2
2,026,617	+		DZA65_RS09630	0.55	+1.0
2,026,617	+		DZA65_RS09630	0.55	-1.0
2,026,618	-		DZA65_RS09630	0.55	-1.8
2,026,618	-		DZA65_RS09630	0.55	-1.8
2,026,618	-		DZA65_RS09630	0.55	-0.5
2,026,618	-		DZA65_RS09630	0.55	-1.4
2,026,618	-		DZA65_RS09630	0.55	-0.7
2,026,688	+				+0.0
2,026,689	-		DZA65_RS09630	0.62	+1.0
2,026,709	+		DZA65_RS09630	0.64	+0.0
2,026,710	-		DZA65_RS09630	0.65	-2.0
2,026,998	+				-1.1
2,026,998	+				-2.0
2,026,998	+				-1.7
2,026,998	+				-0.5
2,026,999	-				-1.5
2,026,999	-				-1.5