Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09500

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,996,481	+		DZA65_RS09490	0.73	-0.9
1,996,482	-		DZA65_RS09490	0.73	-2.2
1,996,482	-		DZA65_RS09490	0.73	-1.2
1,996,577	+		DZA65_RS09490	0.78	-2.9
1,996,600	-		DZA65_RS09490	0.80	-0.6
1,996,760	+		DZA65_RS09490	0.89	-1.2
1,996,760	+		DZA65_RS09490	0.89	-1.3
1,996,761	-		DZA65_RS09490	0.89	-1.3
1,996,761	-		DZA65_RS09490	0.89	-1.4
1,996,956	+				-0.9
1,996,956	+				-1.7
1,996,956	+				-0.3
1,996,956	+				+1.2
1,996,956	+				-1.9
1,996,957	-				-1.3
1,996,957	-				-2.3
1,996,957	-				+0.7
1,996,957	-				-1.3
1,996,957	-				+0.3
1,996,982	+				+0.8
1,996,997	+		DZA65_RS09495	0.13	-0.4
1,996,997	+		DZA65_RS09495	0.13	-0.8
1,997,171	+		DZA65_RS09495	0.86	+0.3
1,997,171	+		DZA65_RS09495	0.86	-1.3
1,997,171	+		DZA65_RS09495	0.86	-1.5
1,997,171	+		DZA65_RS09495	0.86	-0.7
1,997,171	+		DZA65_RS09495	0.86	-1.8
1,997,171	+		DZA65_RS09495	0.86	-1.5
1,997,171	+		DZA65_RS09495	0.86	-0.3
1,997,171	+		DZA65_RS09495	0.86	-3.4
1,997,171	+		DZA65_RS09495	0.86	-1.2
1,997,171	+		DZA65_RS09495	0.86	-0.7
1,997,171	+		DZA65_RS09495	0.86	-1.0
1,997,171	+		DZA65_RS09495	0.86	-2.7
1,997,171	+		DZA65_RS09495	0.86	-0.3
1,997,171	+		DZA65_RS09495	0.86	-1.7
1,997,172	-		DZA65_RS09495	0.86	+1.1
1,997,172	-				-0.3
1,997,172	-		DZA65_RS09495	0.86	-0.3
1,997,172	-		DZA65_RS09495	0.86	+0.6
1,997,172	-		DZA65_RS09495	0.86	-0.7
1,997,172	-		DZA65_RS09495	0.86	-0.5
1,997,172	-		DZA65_RS09495	0.86	+0.4
1,997,172	-		DZA65_RS09495	0.86	-0.9
1,997,172	-		DZA65_RS09495	0.86	-2.3
1,997,172	-		DZA65_RS09495	0.86	-2.2
1,997,172	-		DZA65_RS09495	0.86	+1.1
1,997,172	-		DZA65_RS09495	0.86	-0.7
1,997,172	-		DZA65_RS09495	0.86	+0.1
1,997,172	-		DZA65_RS09495	0.86	-0.3
1,997,172	-		DZA65_RS09495	0.86	-0.9
1,997,172	-		DZA65_RS09495	0.86	-0.2
1,997,172	-		DZA65_RS09495	0.86	-0.3
1,997,172	-		DZA65_RS09495	0.86	-1.0
1,997,172	-		DZA65_RS09495	0.86	+1.7
1,997,172	-		DZA65_RS09495	0.86	+0.7
1,997,172	-		DZA65_RS09495	0.86	+0.2
1,997,172	-		DZA65_RS09495	0.86	-0.9
1,997,172	-		DZA65_RS09495	0.86	-2.5
1,997,175	+		DZA65_RS09495	0.88	+1.1
1,997,175	+				-1.3
1,997,175	+		DZA65_RS09495	0.88	-0.7
1,997,175	+		DZA65_RS09495	0.88	+0.7
1,997,175	+		DZA65_RS09495	0.88	+0.9
1,997,175	+		DZA65_RS09495	0.88	-2.0
1,997,175	+		DZA65_RS09495	0.88	-0.9
1,997,175	+		DZA65_RS09495	0.88	+0.3
1,997,175	+		DZA65_RS09495	0.88	-1.7
1,997,175	+		DZA65_RS09495	0.88	-0.2
1,997,175	+		DZA65_RS09495	0.88	-1.5
1,997,175	+		DZA65_RS09495	0.88	-2.2
1,997,175	+		DZA65_RS09495	0.88	+1.2
1,997,175	+		DZA65_RS09495	0.88	+0.3
1,997,175	+		DZA65_RS09495	0.88	-1.9
1,997,175	+		DZA65_RS09495	0.88	-0.2
1,997,176	-		DZA65_RS09495	0.88	+1.1
1,997,176	-		DZA65_RS09495	0.88	-0.7
1,997,176	-		DZA65_RS09495	0.88	-1.3
1,997,176	-		DZA65_RS09495	0.88	-0.3
1,997,176	-		DZA65_RS09495	0.88	-1.3
1,997,176	-		DZA65_RS09495	0.88	-1.8
1,997,176	-		DZA65_RS09495	0.88	+0.7
1,997,176	-		DZA65_RS09495	0.88	-0.9
1,997,176	-		DZA65_RS09495	0.88	-2.7
1,997,176	-		DZA65_RS09495	0.88	-0.7
1,997,176	-		DZA65_RS09495	0.88	-0.5
1,997,176	-		DZA65_RS09495	0.88	+0.7
1,997,176	-		DZA65_RS09495	0.88	-0.7
1,997,178	+		DZA65_RS09495	0.89	-1.2
1,997,179	-		DZA65_RS09495	0.89	+0.1
1,997,179	-		DZA65_RS09495	0.89	+0.1
1,997,204	+				+0.7
1,997,204	+				+0.7
1,997,204	+				-0.8
1,997,204	+				-0.3
1,997,204	+				-1.1
1,997,204	+				-0.6
1,997,204	+				-1.2
1,997,204	+				-3.2
1,997,204	+				+1.1
1,997,205	-				-0.3
1,997,205	-				-0.7
1,997,205	-				+0.7
1,997,205	-				+0.9
1,997,205	-				-1.5
1,997,205	-				-0.7
1,997,205	-				-2.3
1,997,205	-				-1.5
1,997,205	-				-0.6
1,997,205	-				-0.9
1,997,219	+				-1.7
1,997,220	-				-0.1
1,997,244	+				+0.7
1,997,264	+				-1.3
1,997,265	-				-0.3
1,997,265	-				-2.2
1,997,266	+				-0.7
1,997,266	+				-1.3
1,997,266	+				-1.5
1,997,266	+				-1.0
1,997,266	+				-0.9
1,997,266	+				-0.2
1,997,266	+				+1.3
1,997,267	-				-0.3
1,997,267	-				-1.2
1,997,267	-				-0.2
1,997,267	-				-2.5
1,997,267	-				-1.5
1,997,267	-				-0.9
1,997,267	-				-1.0
1,997,333	-				-0.3
1,997,336	-				-1.2
1,997,427	+				-2.7
1,997,427	+				-1.3
1,997,428	-				-0.7
1,997,454	+				+0.1
1,997,455	-				-2.2
1,997,455	-				-1.3
1,997,461	+				-0.3
1,997,461	+				-1.5
1,997,461	+				-1.5
1,997,462	-				+1.7
1,997,462	-				+0.1
1,997,469	-				+0.1
1,997,522	+				-0.4
1,997,556	-		DZA65_RS09500	0.12	-0.3
1,997,570	+		DZA65_RS09500	0.14	-1.2
1,997,668	-		DZA65_RS09500	0.28	-1.7
1,997,668	-		DZA65_RS09500	0.28	+0.1
1,997,668	-		DZA65_RS09500	0.28	-2.3
1,997,680	+		DZA65_RS09500	0.30	-1.2
1,997,680	+		DZA65_RS09500	0.30	-0.2
1,997,680	+		DZA65_RS09500	0.30	+0.2
1,997,680	+		DZA65_RS09500	0.30	-0.3
1,997,680	+		DZA65_RS09500	0.30	-3.5
1,997,680	+		DZA65_RS09500	0.30	+0.4
1,997,681	-		DZA65_RS09500	0.30	+0.7
1,997,681	-		DZA65_RS09500	0.30	-1.4
1,997,722	+		DZA65_RS09500	0.36	-1.7
1,997,722	+		DZA65_RS09500	0.36	-0.9
1,997,722	+		DZA65_RS09500	0.36	-0.3
1,997,727	+		DZA65_RS09500	0.37	-0.7
1,997,727	+		DZA65_RS09500	0.37	-1.3
1,997,727	+		DZA65_RS09500	0.37	+0.1
1,997,832	+		DZA65_RS09500	0.52	+1.1
1,997,832	+		DZA65_RS09500	0.52	-1.8
1,997,863	+		DZA65_RS09500	0.56	-1.3
1,997,863	+		DZA65_RS09500	0.56	-1.8
1,997,864	-		DZA65_RS09500	0.56	+0.7
1,997,930	+		DZA65_RS09500	0.66	+1.3
1,997,930	+		DZA65_RS09500	0.66	+0.1
1,997,930	+		DZA65_RS09500	0.66	-0.3
1,997,930	+		DZA65_RS09500	0.66	-0.3
1,997,984	-		DZA65_RS09500	0.74	-1.3
1,998,016	+		DZA65_RS09500	0.78	-0.3
1,998,166	+				+1.7
1,998,166	+				-0.9
1,998,167	-				-0.5
1,998,195	+				-0.7
1,998,195	+				+0.9
1,998,196	-				-1.2
1,998,199	+				-1.3
1,998,199	+				+0.1
1,998,200	-				-0.9
1,998,250	-				-1.7
1,998,308	-				+0.7
1,998,349	+				-0.7
1,998,350	-				+0.2
1,998,350	-				-1.6
1,998,350	-				-0.2
1,998,353	+				-2.0
1,998,353	+				-0.6
1,998,353	+				-0.3
1,998,353	+				-1.3
1,998,353	+				-0.7
1,998,353	+				+0.3
1,998,353	+				-1.5
1,998,353	+				-0.3
1,998,353	+				-0.9
1,998,353	+				-0.9
1,998,353	+				-1.8
1,998,354	-				-1.3
1,998,354	-				-0.3
1,998,354	-				+0.7
1,998,354	-				-1.7
1,998,358	-				-3.3
1,998,375	+				-0.5
1,998,375	+				-0.3
1,998,428	+		DZA65_RS09505	0.13	+0.7
1,998,428	+		DZA65_RS09505	0.13	+0.7
1,998,428	+		DZA65_RS09505	0.13	+0.1
1,998,429	-		DZA65_RS09505	0.14	+0.7
1,998,429	-		DZA65_RS09505	0.14	-1.7
1,998,499	+		DZA65_RS09505	0.19	+0.4
1,998,577	+		DZA65_RS09505	0.26	-0.2
1,998,577	+		DZA65_RS09505	0.26	-1.7
1,998,577	+		DZA65_RS09505	0.26	+1.4
1,998,578	-		DZA65_RS09505	0.26	+0.7
1,998,578	-		DZA65_RS09505	0.26	-0.3
1,998,643	+		DZA65_RS09505	0.32	-1.2
1,998,643	+		DZA65_RS09505	0.32	+0.7
1,998,920	+		DZA65_RS09505	0.55	-1.7
1,998,920	+		DZA65_RS09505	0.55	+0.1
1,998,920	+		DZA65_RS09505	0.55	-1.5
1,998,920	+		DZA65_RS09505	0.55	-1.3
1,998,920	+		DZA65_RS09505	0.55	-0.3
1,998,921	-		DZA65_RS09505	0.55	+1.1
1,998,921	-		DZA65_RS09505	0.55	-2.2
1,998,986	+		DZA65_RS09505	0.61	-1.7
1,998,986	+		DZA65_RS09505	0.61	-0.9
1,998,987	-		DZA65_RS09505	0.61	+0.7
1,998,987	-		DZA65_RS09505	0.61	-3.0
1,998,987	-		DZA65_RS09505	0.61	-0.7
1,999,028	+		DZA65_RS09505	0.64	-0.7
1,999,028	+		DZA65_RS09505	0.64	-2.2
1,999,028	+		DZA65_RS09505	0.64	+0.2
1,999,028	+		DZA65_RS09505	0.64	-1.5
1,999,028	+		DZA65_RS09505	0.64	-0.3
1,999,028	+		DZA65_RS09505	0.64	+0.1
1,999,028	+		DZA65_RS09505	0.64	-0.3
1,999,028	+		DZA65_RS09505	0.64	-1.9
1,999,028	+		DZA65_RS09505	0.64	-1.2
1,999,028	+		DZA65_RS09505	0.64	+1.1
1,999,028	+		DZA65_RS09505	0.64	-0.5
1,999,029	-		DZA65_RS09505	0.64	-0.7
1,999,029	-		DZA65_RS09505	0.64	+0.3
1,999,029	-		DZA65_RS09505	0.64	-2.2
1,999,029	-		DZA65_RS09505	0.64	-1.7
1,999,029	-		DZA65_RS09505	0.64	-0.7
1,999,168	+		DZA65_RS09505	0.76	-1.7
1,999,168	+		DZA65_RS09505	0.76	+0.1
1,999,168	+		DZA65_RS09505	0.76	-0.9