Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07770

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,617,200	+				+0.1
1,617,342	-		DZA65_RS07765	0.17	-0.3
1,617,342	-		DZA65_RS07765	0.17	-2.5
1,617,414	-		DZA65_RS07765	0.25	-2.8
1,617,433	-		DZA65_RS07765	0.27	+0.1
1,617,465	+		DZA65_RS07765	0.31	-1.3
1,617,465	+		DZA65_RS07765	0.31	-1.6
1,617,465	+		DZA65_RS07765	0.31	-1.3
1,617,466	-		DZA65_RS07765	0.31	+0.7
1,617,466	-		DZA65_RS07765	0.31	-1.1
1,617,466	-		DZA65_RS07765	0.31	-0.4
1,617,478	+		DZA65_RS07765	0.32	-1.0
1,617,478	+		DZA65_RS07765	0.32	-1.2
1,617,478	+		DZA65_RS07765	0.32	-0.4
1,617,479	-		DZA65_RS07765	0.32	+0.1
1,617,479	-		DZA65_RS07765	0.32	-1.3
1,617,564	+		DZA65_RS07765	0.42	+0.7
1,617,564	+		DZA65_RS07765	0.42	+0.7
1,617,564	+		DZA65_RS07765	0.42	-0.1
1,617,564	+		DZA65_RS07765	0.42	+0.9
1,617,564	+		DZA65_RS07765	0.42	+0.7
1,617,564	+		DZA65_RS07765	0.42	+0.7
1,617,564	+		DZA65_RS07765	0.42	+1.0
1,617,564	+		DZA65_RS07765	0.42	-1.5
1,617,565	-		DZA65_RS07765	0.42	-0.9
1,617,565	-		DZA65_RS07765	0.42	-1.3
1,617,565	-		DZA65_RS07765	0.42	-1.0
1,617,565	-		DZA65_RS07765	0.42	+0.0
1,617,565	-		DZA65_RS07765	0.42	-1.4
1,617,565	-		DZA65_RS07765	0.42	-0.0
1,617,565	-		DZA65_RS07765	0.42	-2.0
1,617,565	-		DZA65_RS07765	0.42	+1.1
1,617,565	-		DZA65_RS07765	0.42	-1.4
1,617,565	-				-1.7
1,617,626	+		DZA65_RS07765	0.49	-0.6
1,617,627	-		DZA65_RS07765	0.49	-1.4
1,617,640	-				-0.9
1,617,774	+		DZA65_RS07765	0.65	+1.7
1,617,775	-		DZA65_RS07765	0.65	-1.4
1,617,789	+		DZA65_RS07765	0.67	-1.7
1,617,789	+		DZA65_RS07765	0.67	-0.9
1,617,789	+		DZA65_RS07765	0.67	+0.9
1,617,789	+		DZA65_RS07765	0.67	-2.0
1,617,789	+		DZA65_RS07765	0.67	-0.3
1,617,789	+		DZA65_RS07765	0.67	-0.8
1,617,789	+		DZA65_RS07765	0.67	-1.7
1,617,789	+		DZA65_RS07765	0.67	+0.6
1,617,789	+		DZA65_RS07765	0.67	-1.1
1,617,790	-		DZA65_RS07765	0.67	-2.0
1,617,790	-		DZA65_RS07765	0.67	-0.1
1,617,790	-		DZA65_RS07765	0.67	+0.7
1,617,790	-		DZA65_RS07765	0.67	+0.7
1,617,790	-		DZA65_RS07765	0.67	-0.7
1,617,790	-		DZA65_RS07765	0.67	+0.1
1,617,790	-		DZA65_RS07765	0.67	-2.2
1,617,813	+		DZA65_RS07765	0.69	+0.5
1,617,843	-		DZA65_RS07765	0.73	-0.1
1,617,843	-		DZA65_RS07765	0.73	-0.6
1,617,884	+		DZA65_RS07765	0.77	+0.7
1,617,884	+		DZA65_RS07765	0.77	-2.2
1,617,884	+		DZA65_RS07765	0.77	-1.3
1,617,884	+		DZA65_RS07765	0.77	+0.1
1,617,884	+		DZA65_RS07765	0.77	+0.0
1,617,884	+		DZA65_RS07765	0.77	-0.6
1,617,924	+		DZA65_RS07765	0.82	+1.3
1,618,002	+				-2.1
1,618,002	+				-0.6
1,618,002	+				-1.6
1,618,002	+				-1.0
1,618,002	+				-1.1
1,618,003	-				+0.2
1,618,003	-				-0.9
1,618,003	-				+0.4
1,618,003	-				-1.5
1,618,003	-				+1.7
1,618,003	-				+0.7
1,618,003	-				-1.6
1,618,003	-				+0.7
1,618,003	-				-1.4
1,618,003	-				-2.1
1,618,003	-				+1.1
1,618,003	-				+0.1
1,618,003	-				-2.8
1,618,003	-				+0.3
1,618,003	-				-1.3
1,618,003	-				-1.4
1,618,009	-				-0.4
1,618,028	+				-1.4
1,618,029	-				+0.1
1,618,029	-				+0.1
1,618,116	+				-1.2
1,618,116	+				+1.7
1,618,116	+				-0.3
1,618,129	-				-2.1
1,618,129	-				-1.7
1,618,133	+				-1.1
1,618,133	+				-1.4
1,618,133	+				-1.1
1,618,133	+				-1.3
1,618,134	-				-0.0
1,618,134	-				-1.3
1,618,134	-				-2.5
1,618,134	-				-0.7
1,618,134	-				-3.0
1,618,134	-				-0.3
1,618,134	-				+1.0
1,618,134	-				-1.0
1,618,257	+				-2.0
1,618,257	+				-1.7
1,618,258	-				-3.2
1,618,258	-				-0.9
1,618,258	-				-0.9
1,618,258	-				-1.4
1,618,410	+		DZA65_RS07770	0.20	+0.4
1,618,410	+		DZA65_RS07770	0.20	-2.4
1,618,468	-		DZA65_RS07770	0.24	-1.3
1,618,468	-		DZA65_RS07770	0.24	-0.4
1,618,473	-		DZA65_RS07770	0.25	+0.1
1,618,473	-		DZA65_RS07770	0.25	-1.6
1,618,473	-		DZA65_RS07770	0.25	-0.9
1,618,508	+		DZA65_RS07770	0.27	-1.3
1,618,508	+		DZA65_RS07770	0.27	-2.0
1,618,508	+		DZA65_RS07770	0.27	-1.1
1,618,508	+		DZA65_RS07770	0.27	-0.3
1,618,508	+		DZA65_RS07770	0.27	-1.4
1,618,508	+		DZA65_RS07770	0.27	-0.6
1,618,509	-		DZA65_RS07770	0.27	-0.9
1,618,509	-		DZA65_RS07770	0.27	-1.1
1,618,509	-		DZA65_RS07770	0.27	-0.3
1,618,706	+		DZA65_RS07770	0.43	-1.1
1,618,751	+		DZA65_RS07770	0.46	+0.7
1,618,751	+		DZA65_RS07770	0.46	-0.6
1,618,751	+		DZA65_RS07770	0.46	-2.1
1,618,752	-		DZA65_RS07770	0.46	+0.7
1,618,765	-		DZA65_RS07770	0.47	-0.4
1,618,781	+		DZA65_RS07770	0.48	-1.6
1,618,859	+		DZA65_RS07770	0.54	+0.1
1,618,860	-		DZA65_RS07770	0.55	-0.1
1,618,860	-		DZA65_RS07770	0.55	-0.3
1,618,930	-		DZA65_RS07770	0.60	-1.6
1,618,943	+		DZA65_RS07770	0.61	+0.1
1,618,943	+		DZA65_RS07770	0.61	+0.7
1,618,943	+		DZA65_RS07770	0.61	+0.1
1,618,943	+		DZA65_RS07770	0.61	-0.9
1,618,944	-		DZA65_RS07770	0.61	+0.6
1,618,944	-		DZA65_RS07770	0.61	-0.1
1,618,944	-		DZA65_RS07770	0.61	-0.1
1,618,944	-				+1.7
1,618,944	-		DZA65_RS07770	0.61	-0.9
1,619,034	+		DZA65_RS07770	0.68	-0.6
1,619,034	+		DZA65_RS07770	0.68	-0.7
1,619,034	+		DZA65_RS07770	0.68	-2.2
1,619,034	+		DZA65_RS07770	0.68	-1.9
1,619,035	-		DZA65_RS07770	0.68	-2.3
1,619,035	-		DZA65_RS07770	0.68	-1.3
1,619,035	-		DZA65_RS07770	0.68	-0.6
1,619,035	-		DZA65_RS07770	0.68	+0.1
1,619,089	-		DZA65_RS07770	0.72	-1.4
1,619,232	+		DZA65_RS07770	0.83	-1.3
1,619,232	+		DZA65_RS07770	0.83	-0.3
1,619,233	-		DZA65_RS07770	0.83	+0.1
1,619,322	+				+0.1
1,619,322	+				+1.4
1,619,323	-				-1.9
1,619,323	-				-0.7
1,619,323	-				-0.6
1,619,323	-				-1.4
1,619,325	+				-0.6
1,619,325	+				+0.1
1,619,326	-				+0.7
1,619,326	-				-1.0
1,619,326	-				-0.0
1,619,326	-				-1.5
1,619,326	-				+0.7
1,619,331	-				-2.2
1,619,331	-				+1.1
1,619,366	+				-2.0
1,619,367	-				-0.6
1,619,367	-				-0.3
1,619,367	-				+0.1
1,619,367	-				-0.9
1,619,416	+				+1.7
1,619,416	+				-2.2
1,619,417	-				-1.2
1,619,417	-				+0.5
1,619,417	-				-1.3
1,619,417	-				-0.1
1,619,417	-				-1.4
1,619,422	+				-3.3
1,619,423	-				+0.4
1,619,425	+				-0.3
1,619,425	+				+1.7
1,619,426	-				-1.3
1,619,428	+				-1.5
1,619,429	-				-0.3
1,619,445	+				-0.6
1,619,445	+				+0.1
1,619,445	+				-0.1
1,619,446	-				+0.9
1,619,446	-				-1.0
1,619,446	-				-0.1
1,619,447	+				-0.6
1,619,447	+				-0.1
1,619,448	-				+0.7
1,619,448	-				+1.2
1,619,448	-				-0.3
1,619,448	-				+0.1
1,619,448	-				-1.1
1,619,448	-				-0.6
1,619,468	+				-1.9
1,619,469	-				-1.4
1,619,489	+				-2.0
1,619,524	+				-2.4
1,619,524	+				-0.6
1,619,578	-				-0.4
1,619,580	+				-0.9
1,619,619	-				-0.5
1,619,628	+				-3.1
1,619,629	-				+1.1
1,619,629	-				-1.7
1,619,629	-				-0.9
1,619,673	-				+0.7
1,619,727	-				+1.7
1,619,780	+				-0.7
1,619,797	-				-0.9
1,619,889	+				-0.9
1,619,892	+				-2.9
1,619,899	+				-2.3
1,619,904	-				-0.6
1,619,904	-				-1.2
1,619,926	-				-3.3
1,619,935	+				-1.9
1,619,936	-				-0.9
1,619,936	-				+1.1
1,619,938	+				+1.4
1,619,996	+				+0.9
1,619,996	+				+1.7
1,619,997	-				-0.6
1,620,095	-				-1.3
1,620,099	+				+0.1
1,620,100	-				+0.1
1,620,122	+				-0.4
1,620,122	+				-0.3
1,620,122	+				+0.7
1,620,122	+				-0.3
1,620,122	+				-1.3
1,620,141	+				-1.1
1,620,141	+				-1.6
1,620,141	+				+0.1
1,620,142	-				+1.3
1,620,175	-				-0.7
1,620,176	+				-1.6
1,620,181	+				+0.4
1,620,181	+				+0.7
1,620,181	+				-1.2
1,620,181	+				-2.1
1,620,182	-				+1.7
1,620,182	-				+1.1
1,620,182	-				+1.1
1,620,196	-				-0.9
1,620,202	+				-1.6
1,620,206	+				-2.3
1,620,206	+				-0.4
1,620,212	+				+0.9
1,620,212	+				-1.1
1,620,241	+				-0.6
1,620,242	-				-1.1
1,620,242	-				-0.7
1,620,250	+				+0.1
1,620,250	+				-1.1
1,620,252	+				-0.3
1,620,252	+				-2.2
1,620,252	+				+0.6
1,620,252	+				+0.4
1,620,252	+				-1.6
1,620,253	-				-1.3
1,620,253	-				-0.6
1,620,272	+				-0.6
1,620,272	+				-2.0
1,620,272	+				-1.1
1,620,311	+				-1.3
1,620,311	+				-1.1
1,620,311	+				-0.1
1,620,312	-				-1.1
1,620,312	-				-0.5
1,620,312	-				-0.6
1,620,316	+				-0.9
1,620,316	+				-2.6
1,620,316	+				-1.7
1,620,316	+				+0.6
1,620,317	-				-0.4
1,620,317	-				-1.2
1,620,329	+				+0.7
1,620,329	+				-0.3
1,620,329	+				-0.9
1,620,329	+				-1.3
1,620,329	+				-1.7
1,620,329	+				-0.3
1,620,329	+				-0.1
1,620,330	-				-0.9
1,620,330	-				-0.3
1,620,330	-				-0.6
1,620,330	-				-1.4
1,620,333	+				-1.7
1,620,334	-				-0.6
1,620,395	+				-0.2
1,620,395	+				+0.5
1,620,395	+				-1.1
1,620,396	-				+0.1