Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07215

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,499,445	+		DZA65_RS07205	0.85	-0.8
1,499,530	+				+0.5
1,499,530	+				-0.2
1,499,531	-				-0.8
1,499,531	-				-1.9
1,499,531	-				-2.3
1,499,531	-				-2.9
1,499,602	+				-0.8
1,499,602	+				-0.6
1,499,603	-				-1.2
1,499,606	+				-1.5
1,499,607	-				-0.5
1,499,607	-				-0.0
1,499,617	+				-0.5
1,499,618	-				+0.8
1,499,618	-				+0.6
1,499,618	-				-0.0
1,499,618	-				-0.5
1,499,618	-				+0.2
1,499,619	+				-2.0
1,499,619	+				-0.8
1,499,619	+				-1.4
1,499,619	+				-0.8
1,499,619	+				-1.0
1,499,619	+				-0.4
1,499,619	+				+1.2
1,499,619	+				-1.5
1,499,619	+				-1.8
1,499,619	+				-0.8
1,499,619	+				-0.4
1,499,619	+				-0.5
1,499,620	-				-0.7
1,499,620	-				+0.4
1,499,620	-				-0.5
1,499,620	-				+0.8
1,499,620	-				-2.2
1,499,620	-				+0.8
1,499,620	-				-0.8
1,499,620	-				-1.2
1,499,620	-				-1.9
1,499,620	-				-1.4
1,499,620	-				-0.8
1,499,620	-				-1.5
1,499,620	-				-1.4
1,499,620	-				-0.8
1,499,620	-				-1.7
1,499,620	-				-1.0
1,499,620	-				+0.2
1,499,620	-				-1.0
1,499,620	-				-2.0
1,499,620	-				+1.4
1,499,623	+				-2.5
1,499,624	-				-1.9
1,499,624	-				-1.2
1,499,624	-				-0.8
1,499,624	-				-0.5
1,499,719	-				+0.8
1,499,768	-				-2.0
1,499,895	+		DZA65_RS07210	0.26	+0.5
1,499,895	+		DZA65_RS07210	0.26	-0.5
1,499,895	+		DZA65_RS07210	0.26	-1.3
1,499,895	+		DZA65_RS07210	0.26	-2.4
1,499,895	+		DZA65_RS07210	0.26	-1.9
1,499,896	-		DZA65_RS07210	0.26	-0.5
1,499,896	-		DZA65_RS07210	0.26	-1.8
1,499,896	-		DZA65_RS07210	0.26	+0.2
1,499,896	-		DZA65_RS07210	0.26	-1.3
1,499,896	-		DZA65_RS07210	0.26	+0.2
1,499,896	-		DZA65_RS07210	0.26	-0.2
1,500,031	+		DZA65_RS07210	0.53	-1.5
1,500,031	+		DZA65_RS07210	0.53	-1.2
1,500,117	-		DZA65_RS07210	0.69	+1.2
1,500,117	-		DZA65_RS07210	0.69	-0.4
1,500,117	-		DZA65_RS07210	0.69	-0.5
1,500,370	-				-0.9
1,500,398	+				+0.2
1,500,398	+				-1.2
1,500,398	+				+1.2
1,500,398	+				-0.5
1,500,398	+				-1.4
1,500,399	-				-0.5
1,500,399	-				-0.2
1,500,399	-				-1.9
1,500,399	-				+1.0
1,500,399	-				-2.4
1,500,435	+				+1.2
1,500,436	-				-0.2
1,500,436	-				+1.0
1,500,436	-				+0.8
1,500,532	+				+0.8
1,500,532	+				-0.9
1,500,532	+				+0.2
1,500,532	+				-0.9
1,500,532	+				+0.2
1,500,532	+				-1.5
1,500,532	+				+0.2
1,500,532	+				-1.4
1,500,532	+				-0.2
1,500,533	-				-1.0
1,500,533	-				+0.2
1,500,533	-				-2.4
1,500,533	-				-2.5
1,500,533	-				+0.2
1,500,533	-				-0.8
1,500,533	-				-2.0
1,500,568	+		DZA65_RS07215	0.12	-1.5
1,500,568	+		DZA65_RS07215	0.12	-0.9
1,500,570	+		DZA65_RS07215	0.12	-0.7
1,500,570	+		DZA65_RS07215	0.12	+0.2
1,500,570	+		DZA65_RS07215	0.12	+1.8
1,500,570	+		DZA65_RS07215	0.12	-1.2
1,500,571	-		DZA65_RS07215	0.12	-0.5
1,500,571	-		DZA65_RS07215	0.12	-2.4
1,500,571	-		DZA65_RS07215	0.12	-2.5
1,500,571	-		DZA65_RS07215	0.12	-0.9
1,500,571	-		DZA65_RS07215	0.12	-0.5
1,500,571	-				-0.5
1,500,571	-		DZA65_RS07215	0.12	-1.2
1,500,580	-		DZA65_RS07215	0.13	-0.8
1,500,580	-		DZA65_RS07215	0.13	+0.8
1,500,670	+		DZA65_RS07215	0.20	+0.2
1,500,670	+		DZA65_RS07215	0.20	-1.0
1,500,670	+		DZA65_RS07215	0.20	+1.8
1,500,670	+		DZA65_RS07215	0.20	-0.2
1,500,671	-		DZA65_RS07215	0.21	+1.8
1,500,694	+		DZA65_RS07215	0.23	-1.4
1,500,695	-		DZA65_RS07215	0.23	-0.8
1,500,695	-		DZA65_RS07215	0.23	+0.2
1,500,696	+		DZA65_RS07215	0.23	+0.3
1,500,696	+		DZA65_RS07215	0.23	-3.0
1,500,696	+		DZA65_RS07215	0.23	+1.8
1,500,696	+		DZA65_RS07215	0.23	-0.8
1,500,696	+		DZA65_RS07215	0.23	-0.3
1,500,696	+		DZA65_RS07215	0.23	+0.4
1,500,697	-		DZA65_RS07215	0.23	-0.5
1,500,697	-		DZA65_RS07215	0.23	+1.8
1,500,697	-		DZA65_RS07215	0.23	+0.2
1,500,697	-		DZA65_RS07215	0.23	-1.8
1,500,697	-		DZA65_RS07215	0.23	+1.8
1,500,697	-		DZA65_RS07215	0.23	-1.2
1,500,709	+		DZA65_RS07215	0.24	-0.2
1,500,709	+		DZA65_RS07215	0.24	+0.6
1,500,709	+		DZA65_RS07215	0.24	-1.2
1,500,709	+		DZA65_RS07215	0.24	+0.2
1,500,709	+		DZA65_RS07215	0.24	-1.0
1,500,709	+		DZA65_RS07215	0.24	-0.8
1,500,710	-		DZA65_RS07215	0.24	-0.5
1,500,710	-		DZA65_RS07215	0.24	-1.2
1,500,710	-		DZA65_RS07215	0.24	-0.5
1,500,710	-		DZA65_RS07215	0.24	+0.5
1,500,710	-		DZA65_RS07215	0.24	+1.2
1,500,710	-		DZA65_RS07215	0.24	+2.2
1,500,710	-		DZA65_RS07215	0.24	+0.8
1,500,710	-		DZA65_RS07215	0.24	-1.7
1,500,710	-		DZA65_RS07215	0.24	-0.7
1,500,714	+		DZA65_RS07215	0.24	+0.0
1,500,714	+		DZA65_RS07215	0.24	-0.8
1,500,714	+		DZA65_RS07215	0.24	-0.3
1,500,714	+		DZA65_RS07215	0.24	-0.5
1,500,715	-		DZA65_RS07215	0.24	-1.9
1,500,715	-		DZA65_RS07215	0.24	-0.2
1,500,715	-		DZA65_RS07215	0.24	-1.8
1,500,715	-		DZA65_RS07215	0.24	+0.8
1,500,778	+		DZA65_RS07215	0.30	-1.0
1,500,778	+		DZA65_RS07215	0.30	-1.2
1,500,778	+		DZA65_RS07215	0.30	-0.8
1,500,778	+		DZA65_RS07215	0.30	-1.2
1,500,779	-		DZA65_RS07215	0.30	-1.0
1,500,779	-		DZA65_RS07215	0.30	-0.7
1,500,779	-		DZA65_RS07215	0.30	-0.8
1,500,779	-		DZA65_RS07215	0.30	-0.8
1,500,780	+		DZA65_RS07215	0.30	-0.2
1,500,781	-		DZA65_RS07215	0.30	-1.1
1,500,781	-		DZA65_RS07215	0.30	-1.0
1,500,924	+		DZA65_RS07215	0.43	-2.0
1,500,924	+		DZA65_RS07215	0.43	-1.0
1,500,924	+		DZA65_RS07215	0.43	+1.5
1,500,924	+		DZA65_RS07215	0.43	-1.3
1,500,924	+		DZA65_RS07215	0.43	-1.2
1,500,925	-		DZA65_RS07215	0.43	-0.2
1,500,925	-		DZA65_RS07215	0.43	-2.2
1,500,925	-		DZA65_RS07215	0.43	-0.5
1,500,925	-		DZA65_RS07215	0.43	-0.0
1,501,095	+		DZA65_RS07215	0.58	-2.8
1,501,095	+		DZA65_RS07215	0.58	-1.8
1,501,095	+		DZA65_RS07215	0.58	+0.8
1,501,102	+		DZA65_RS07215	0.58	-2.4
1,501,102	+		DZA65_RS07215	0.58	-0.5
1,501,102	+		DZA65_RS07215	0.58	-0.5
1,501,103	-		DZA65_RS07215	0.58	-0.6
1,501,103	-		DZA65_RS07215	0.58	-0.5
1,501,110	+		DZA65_RS07215	0.59	-0.5
1,501,149	+		DZA65_RS07215	0.62	+1.8
1,501,150	-		DZA65_RS07215	0.62	-0.4
1,501,150	-		DZA65_RS07215	0.62	-1.9
1,501,152	+		DZA65_RS07215	0.63	+0.8
1,501,153	-		DZA65_RS07215	0.63	-1.7
1,501,153	-		DZA65_RS07215	0.63	+0.8
1,501,180	+		DZA65_RS07215	0.65	-0.2
1,501,181	-		DZA65_RS07215	0.65	-1.2
1,501,181	-		DZA65_RS07215	0.65	-1.0
1,501,309	+		DZA65_RS07215	0.76	-1.7
1,501,309	+		DZA65_RS07215	0.76	+1.2
1,501,310	-		DZA65_RS07215	0.76	-1.5
1,501,378	+		DZA65_RS07215	0.82	-1.5
1,501,378	+		DZA65_RS07215	0.82	+0.8
1,501,378	+		DZA65_RS07215	0.82	+0.1
1,501,378	+		DZA65_RS07215	0.82	-2.0
1,501,379	-		DZA65_RS07215	0.83	-0.3
1,501,379	-		DZA65_RS07215	0.83	-1.2
1,501,379	-		DZA65_RS07215	0.83	-1.0
1,501,441	+		DZA65_RS07215	0.88	-0.2
1,501,483	+				-1.0
1,501,483	+				-0.8
1,501,540	-				-0.0
1,501,583	+				+0.2
1,501,583	+				-0.8
1,501,587	+				-1.2
1,501,587	+				-0.2
1,501,587	+				-1.5
1,501,588	-				+1.2
1,501,613	-				-2.1
1,501,680	+				+0.8
1,501,689	+				-0.5
1,501,731	+		DZA65_RS07220	0.11	-0.1
1,501,731	+		DZA65_RS07220	0.11	-0.9
1,501,731	+		DZA65_RS07220	0.11	-0.4
1,501,731	+		DZA65_RS07220	0.11	-0.0
1,501,731	+		DZA65_RS07220	0.11	-1.0
1,501,732	-		DZA65_RS07220	0.11	+1.1
1,501,732	-		DZA65_RS07220	0.11	-1.9
1,501,732	-		DZA65_RS07220	0.11	-0.4
1,501,732	-		DZA65_RS07220	0.11	+0.2
1,501,896	+		DZA65_RS07220	0.45	-1.2
1,501,897	-				-1.4
1,501,905	+		DZA65_RS07220	0.47	-0.8
1,501,905	+		DZA65_RS07220	0.47	-1.7
1,501,905	+		DZA65_RS07220	0.47	-1.0
1,501,905	+		DZA65_RS07220	0.47	+0.4
1,501,905	+		DZA65_RS07220	0.47	-1.1
1,501,906	-		DZA65_RS07220	0.47	-0.8
1,501,939	+		DZA65_RS07220	0.53	+0.4
1,501,939	+		DZA65_RS07220	0.53	-1.2
1,501,940	-		DZA65_RS07220	0.54	-1.4
1,501,940	-		DZA65_RS07220	0.54	-0.5
1,501,940	-		DZA65_RS07220	0.54	+0.5
1,501,940	-		DZA65_RS07220	0.54	-2.0
1,501,940	-		DZA65_RS07220	0.54	-2.1
1,501,940	-		DZA65_RS07220	0.54	+0.2
1,501,980	+		DZA65_RS07220	0.62	-1.0
1,501,980	+		DZA65_RS07220	0.62	-0.4
1,501,981	-		DZA65_RS07220	0.62	-0.5
1,501,981	-		DZA65_RS07220	0.62	-1.9
1,502,030	-		DZA65_RS07220	0.72	-0.2
1,502,030	-		DZA65_RS07220	0.72	-0.0
1,502,058	+		DZA65_RS07220	0.78	-2.4
1,502,058	+		DZA65_RS07220	0.78	-1.6
1,502,058	+		DZA65_RS07220	0.78	-0.2
1,502,059	-		DZA65_RS07220	0.78	-1.5
1,502,059	-		DZA65_RS07220	0.78	-1.2
1,502,070	+		DZA65_RS07220	0.80	+0.8
1,502,071	-		DZA65_RS07220	0.81	-1.2
1,502,153	-				-0.8
1,502,164	+				-2.0
1,502,164	+				-2.5
1,502,164	+				+1.2
1,502,164	+				-1.3
1,502,164	+				+0.2
1,502,164	+				-0.2
1,502,165	-				-3.1
1,502,165	-				-2.2
1,502,165	-				+1.0
1,502,165	-				+0.3
1,502,165	-				+0.8
1,502,165	-				+0.4
1,502,165	-				-0.8
1,502,165	-				-0.8
1,502,165	-				-0.5
1,502,165	-				-0.4
1,502,165	-				-0.7
1,502,165	-				-1.7
1,502,165	-				-1.2
1,502,166	+				-0.1
1,502,166	+				+0.1
1,502,166	+				-0.0
1,502,166	+				-0.9
1,502,166	+				-1.5
1,502,166	+				-1.1
1,502,166	+				-0.8
1,502,166	+				-1.2
1,502,166	+				-1.2
1,502,166	+				+1.8
1,502,166	+				-1.1
1,502,167	-				-0.1
1,502,167	-				-0.9
1,502,167	-				+0.8
1,502,167	-				-0.4
1,502,167	-				-0.2
1,502,167	-				+0.8
1,502,167	-				-0.8
1,502,167	-				+0.6
1,502,167	-				-0.5
1,502,167	-				-0.2
1,502,167	-				-1.9
1,502,167	-				-2.3
1,502,261	+				-2.2
1,502,261	+				-0.5
1,502,261	+				+0.2
1,502,262	-				-2.3
1,502,262	-				-1.0
1,502,282	-				+0.2
1,502,311	+				-0.2
1,502,312	-				-1.9
1,502,312	-				-0.0
1,502,312	-				-1.0
1,502,312	-				-1.0
1,502,313	+				+0.8
1,502,314	-				+0.2
1,502,314	-				-0.9
1,502,331	-				-0.8
1,502,331	-				-0.2
1,502,495	+				-1.8
1,502,495	+				+1.8
1,502,495	+				-1.7
1,502,496	-				-0.2
1,502,496	-				+0.2
1,502,496	-				-0.2
1,502,496	-				-2.1
1,502,496	-				+1.8
1,502,496	-				+0.8
1,502,496	-				-0.5
1,502,496	-				-0.5
1,502,499	+				+1.0
1,502,499	+				-1.0
1,502,499	+				-0.2