Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05390

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,108,020	+		DZA65_RS05385	0.64	-2.9
1,108,020	+		DZA65_RS05385	0.64	+0.3
1,108,020	+		DZA65_RS05385	0.64	+0.7
1,108,020	+		DZA65_RS05385	0.64	-0.9
1,108,020	+		DZA65_RS05385	0.64	+0.6
1,108,020	+		DZA65_RS05385	0.64	+0.9
1,108,020	+		DZA65_RS05385	0.64	-0.2
1,108,020	+		DZA65_RS05385	0.64	+0.6
1,108,021	-		DZA65_RS05385	0.64	+0.3
1,108,021	-		DZA65_RS05385	0.64	-0.4
1,108,021	-		DZA65_RS05385	0.64	+0.5
1,108,021	-		DZA65_RS05385	0.64	-1.3
1,108,021	-		DZA65_RS05385	0.64	+0.9
1,108,021	-		DZA65_RS05385	0.64	+0.3
1,108,021	-		DZA65_RS05385	0.64	+0.3
1,108,021	-		DZA65_RS05385	0.64	-0.4
1,108,138	+		DZA65_RS05385	0.74	-1.1
1,108,154	+		DZA65_RS05385	0.75	-0.1
1,108,154	+		DZA65_RS05385	0.75	+0.3
1,108,154	+		DZA65_RS05385	0.75	-1.6
1,108,155	-		DZA65_RS05385	0.75	+0.6
1,108,155	-				+0.3
1,108,155	-		DZA65_RS05385	0.75	-1.6
1,108,328	+		DZA65_RS05385	0.89	+0.9
1,108,328	+		DZA65_RS05385	0.89	+0.1
1,108,328	+		DZA65_RS05385	0.89	-0.9
1,108,328	+		DZA65_RS05385	0.89	+0.4
1,108,328	+		DZA65_RS05385	0.89	-0.4
1,108,328	+		DZA65_RS05385	0.89	+0.4
1,108,329	-		DZA65_RS05385	0.89	+0.7
1,108,329	-		DZA65_RS05385	0.89	-0.1
1,108,329	-		DZA65_RS05385	0.89	+0.6
1,108,329	-		DZA65_RS05385	0.89	-1.6
1,108,329	-		DZA65_RS05385	0.89	+0.1
1,108,329	-		DZA65_RS05385	0.89	-0.9
1,108,329	-		DZA65_RS05385	0.89	-2.6
1,108,331	+		DZA65_RS05385	0.90	+0.7
1,108,331	+		DZA65_RS05385	0.90	+0.7
1,108,331	+		DZA65_RS05385	0.90	+0.7
1,108,331	+		DZA65_RS05385	0.90	-0.1
1,108,331	+		DZA65_RS05385	0.90	-2.5
1,108,331	+		DZA65_RS05385	0.90	-2.2
1,108,332	-		DZA65_RS05385	0.90	-1.3
1,108,332	-		DZA65_RS05385	0.90	-0.5
1,108,332	-		DZA65_RS05385	0.90	-0.7
1,108,332	-		DZA65_RS05385	0.90	-0.1
1,108,391	+				+0.3
1,108,511	+				+0.3
1,108,511	+				-1.4
1,108,548	-				-0.4
1,108,561	+				-0.7
1,108,561	+				+0.3
1,108,561	+				-0.5
1,108,562	-				-0.4
1,108,562	-				+1.3
1,108,566	+				-1.1
1,108,566	+				-0.3
1,108,567	-				+0.9
1,108,585	-				+0.2
1,108,649	+				-1.4
1,108,650	-				-0.9
1,108,650	-				-0.1
1,108,650	-				-1.1
1,108,650	-				-4.4
1,108,655	+				-0.3
1,108,672	+				-1.5
1,108,797	-				-0.7
1,108,797	-				-0.7
1,108,799	+				-1.8
1,108,799	+				+0.3
1,108,799	+				-1.9
1,108,799	+				+0.9
1,108,799	+				+0.0
1,108,799	+				-1.1
1,108,799	+				+0.6
1,108,800	-				-1.4
1,108,800	-				-0.4
1,108,801	+				-1.3
1,108,801	+				-0.7
1,108,801	+				+0.1
1,108,801	+				+0.4
1,108,801	+				+0.1
1,108,801	+				+0.2
1,108,801	+				-2.1
1,108,802	-				-1.8
1,108,802	-				-2.3
1,108,802	-				+0.3
1,108,802	-				-1.9
1,108,802	-				-0.7
1,108,802	-				-1.0
1,108,802	-				+0.3
1,108,802	-				-0.3
1,108,802	-				-1.5
1,108,806	-				-0.7
1,108,806	-				-0.9
1,108,806	-				+0.6
1,108,835	+				-1.8
1,108,835	+				+1.3
1,108,836	-				-1.8
1,108,836	-				-1.5
1,108,836	-				+1.9
1,108,837	+				-1.3
1,108,837	+				+0.1
1,108,859	+				-0.7
1,108,899	+				-0.7
1,108,900	-				-1.8
1,108,916	-				-0.1
1,109,004	+				-0.7
1,109,005	-				-1.0
1,109,005	-				-1.2
1,109,005	-				-1.7
1,109,120	+		DZA65_RS05390	0.22	-0.7
1,109,120	+		DZA65_RS05390	0.22	-0.9
1,109,120	+		DZA65_RS05390	0.22	-1.4
1,109,120	+		DZA65_RS05390	0.22	-2.2
1,109,121	-		DZA65_RS05390	0.22	-1.3
1,109,121	-		DZA65_RS05390	0.22	-0.8
1,109,121	-		DZA65_RS05390	0.22	+0.3
1,109,121	-		DZA65_RS05390	0.22	+0.7
1,109,185	+		DZA65_RS05390	0.29	-0.1
1,109,273	+		DZA65_RS05390	0.39	+0.3
1,109,396	+		DZA65_RS05390	0.52	+0.6
1,109,405	+		DZA65_RS05390	0.53	-1.8
1,109,474	-		DZA65_RS05390	0.60	-0.7
1,109,482	+		DZA65_RS05390	0.61	-0.9
1,109,482	+		DZA65_RS05390	0.61	-1.8
1,109,482	+		DZA65_RS05390	0.61	-1.3
1,109,482	+		DZA65_RS05390	0.61	-1.7
1,109,482	+		DZA65_RS05390	0.61	-0.4
1,109,482	+		DZA65_RS05390	0.61	+1.3
1,109,482	+		DZA65_RS05390	0.61	-0.2
1,109,482	+		DZA65_RS05390	0.61	+0.3
1,109,483	-		DZA65_RS05390	0.61	+1.5
1,109,483	-		DZA65_RS05390	0.61	-0.9
1,109,483	-		DZA65_RS05390	0.61	-1.3
1,109,522	+		DZA65_RS05390	0.65	-0.4
1,109,522	+		DZA65_RS05390	0.65	-1.3
1,109,522	+		DZA65_RS05390	0.65	-0.1
1,109,522	+		DZA65_RS05390	0.65	-0.7
1,109,523	-		DZA65_RS05390	0.65	+0.9
1,109,523	-		DZA65_RS05390	0.65	-2.2
1,109,524	+		DZA65_RS05390	0.66	-0.4
1,109,551	+		DZA65_RS05390	0.69	-0.9
1,109,551	+		DZA65_RS05390	0.69	-1.7
1,109,552	-		DZA65_RS05390	0.69	-1.1
1,109,552	-		DZA65_RS05390	0.69	-1.5
1,109,717	+		DZA65_RS05390	0.86	-0.4
1,109,757	+				-1.9
1,109,757	+				+2.9
1,109,757	+				-0.6
1,109,830	+				+1.7
1,109,830	+				-1.5
1,109,830	+				+0.9
1,109,830	+				+0.9
1,109,830	+				+0.9
1,109,830	+				-0.3
1,109,830	+				-1.4
1,109,830	+				-1.1
1,109,831	-				-1.3
1,109,831	-				+0.9
1,109,831	-				-0.4
1,109,831	-				+0.3
1,109,831	-				+0.3
1,109,831	-				-0.1
1,109,831	-				+1.1
1,109,831	-				-0.4
1,109,831	-				+0.3
1,109,923	+				-1.1
1,109,923	+				-1.7
1,109,923	+				-1.3
1,109,923	+				+0.9
1,109,923	+				-1.3
1,109,924	-				+1.1
1,109,924	-				-0.6
1,109,924	-				-0.4
1,109,924	-				-0.4
1,109,924	-				+1.9
1,109,924	-				-0.6
1,109,925	+				-0.4
1,109,925	+				+0.9
1,109,925	+				+0.9
1,109,925	+				-0.9
1,109,925	+				-3.2
1,109,925	+				-0.1
1,109,925	+				-0.5
1,109,925	+				+0.3
1,109,925	+				-1.1
1,109,925	+				+0.0
1,109,925	+				+0.9
1,109,925	+				-0.7
1,109,926	-				-1.8
1,109,926	-				-0.1
1,109,926	-				-0.8
1,109,926	-				-0.3
1,109,932	+				+0.8
1,109,932	+				-0.5
1,109,932	+				-0.5
1,109,932	+				-1.1
1,109,932	+				-0.9
1,109,933	-				-2.0
1,109,933	-				-0.7
1,109,965	+				-0.7
1,109,965	+				+2.3
1,109,965	+				-1.8
1,109,965	+				+0.3
1,109,966	-				-1.3
1,109,966	-				+1.6
1,109,966	-				-1.0
1,109,966	-				-2.3
1,109,991	+		DZA65_RS05395	0.12	-0.4
1,109,991	+		DZA65_RS05395	0.12	+0.7
1,109,991	+		DZA65_RS05395	0.12	-3.5
1,109,991	+		DZA65_RS05395	0.12	+0.6
1,109,991	+		DZA65_RS05395	0.12	-1.9
1,109,991	+		DZA65_RS05395	0.12	-1.8
1,109,991	+		DZA65_RS05395	0.12	-0.7
1,109,992	-		DZA65_RS05395	0.13	-0.1
1,109,992	-		DZA65_RS05395	0.13	-0.1
1,109,992	-		DZA65_RS05395	0.13	-1.4
1,109,992	-		DZA65_RS05395	0.13	-2.6
1,109,992	-		DZA65_RS05395	0.13	-2.9
1,110,029	+		DZA65_RS05395	0.22	-1.4
1,110,030	-		DZA65_RS05395	0.22	-2.0
1,110,150	+		DZA65_RS05395	0.53	-0.8
1,110,151	-		DZA65_RS05395	0.54	-2.3
1,110,204	+		DZA65_RS05395	0.67	-0.9
1,110,204	+		DZA65_RS05395	0.67	-2.3
1,110,204	+		DZA65_RS05395	0.67	-1.5
1,110,232	+		DZA65_RS05395	0.75	-0.7
1,110,232	+		DZA65_RS05395	0.75	-1.8
1,110,233	-		DZA65_RS05395	0.75	-0.7
1,110,233	-				+0.6
1,110,233	-		DZA65_RS05395	0.75	-0.3
1,110,238	+		DZA65_RS05395	0.76	-0.1
1,110,238	+		DZA65_RS05395	0.76	+0.2
1,110,238	+		DZA65_RS05395	0.76	+0.9
1,110,239	-		DZA65_RS05395	0.76	-1.0
1,110,239	-		DZA65_RS05395	0.76	+0.9
1,110,286	+		DZA65_RS05395	0.89	-0.4
1,110,287	-		DZA65_RS05395	0.89	-1.5
1,110,287	-		DZA65_RS05395	0.89	-1.5
1,110,287	-		DZA65_RS05395	0.89	-0.5
1,110,292	+				-0.4
1,110,293	-				-0.4
1,110,293	-				-0.1
1,110,293	-				-0.4
1,110,304	+				-1.4
1,110,304	+				-0.2
1,110,305	-				+0.3
1,110,305	-				-1.8
1,110,305	-				-0.9
1,110,327	+				-1.5
1,110,327	+				-1.5
1,110,327	+				-1.4
1,110,328	-				-0.8
1,110,328	-				+0.3
1,110,336	+				-1.2
1,110,336	+				-0.1
1,110,336	+				-2.0
1,110,337	-				+0.3
1,110,337	-				-1.7
1,110,409	+				-0.7
1,110,410	-				+1.3
1,110,411	+				-2.8
1,110,411	+				-0.4
1,110,411	+				-0.1
1,110,412	-				-1.4
1,110,412	-				-0.3
1,110,412	-				+0.7
1,110,418	+				-0.7
1,110,419	-				-0.9
1,110,419	-				+0.9
1,110,435	-				-1.2
1,110,435	-				-0.7
1,110,441	+		DZA65_RS05400	0.10	+0.9
1,110,451	+		DZA65_RS05400	0.11	-1.3
1,110,451	+		DZA65_RS05400	0.11	+0.3
1,110,451	+		DZA65_RS05400	0.11	-1.0
1,110,451	+		DZA65_RS05400	0.11	-1.7
1,110,452	-		DZA65_RS05400	0.11	-0.1
1,110,452	-		DZA65_RS05400	0.11	-0.9
1,110,452	-		DZA65_RS05400	0.11	-0.7
1,110,452	-		DZA65_RS05400	0.11	-0.7
1,110,469	+		DZA65_RS05400	0.13	-1.8
1,110,469	+		DZA65_RS05400	0.13	-0.4
1,110,469	+		DZA65_RS05400	0.13	+1.2
1,110,469	+		DZA65_RS05400	0.13	-1.4
1,110,470	-		DZA65_RS05400	0.13	-2.4
1,110,506	+		DZA65_RS05400	0.16	+0.3
1,110,507	-		DZA65_RS05400	0.16	-0.7
1,110,545	+		DZA65_RS05400	0.19	-1.5
1,110,546	-		DZA65_RS05400	0.20	-2.3
1,110,546	-		DZA65_RS05400	0.20	+0.6
1,110,546	-		DZA65_RS05400	0.20	+0.7
1,110,546	-		DZA65_RS05400	0.20	+0.0
1,110,546	-		DZA65_RS05400	0.20	-1.5
1,110,786	+		DZA65_RS05400	0.41	-0.4
1,110,786	+		DZA65_RS05400	0.41	-0.8
1,110,786	+		DZA65_RS05400	0.41	-1.1
1,110,787	-		DZA65_RS05400	0.41	-0.4
1,110,787	-		DZA65_RS05400	0.41	+0.7
1,110,805	+		DZA65_RS05400	0.43	+1.0
1,110,805	+		DZA65_RS05400	0.43	+0.2
1,110,805	+		DZA65_RS05400	0.43	-1.3
1,110,805	+		DZA65_RS05400	0.43	-0.7
1,110,805	+		DZA65_RS05400	0.43	-0.8
1,110,805	+		DZA65_RS05400	0.43	-0.4
1,110,806	-		DZA65_RS05400	0.43	-0.5
1,110,806	-		DZA65_RS05400	0.43	-1.5
1,110,806	-		DZA65_RS05400	0.43	-0.9
1,110,806	-		DZA65_RS05400	0.43	-2.1
1,110,820	+		DZA65_RS05400	0.44	-1.1
1,110,820	+		DZA65_RS05400	0.44	-1.3
1,110,820	+		DZA65_RS05400	0.44	-1.7
1,110,821	-		DZA65_RS05400	0.45	-1.7
1,110,821	-		DZA65_RS05400	0.45	+0.9
1,110,828	+		DZA65_RS05400	0.45	+0.3