Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotides DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides
DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652
_RS04445
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.739 kb on + strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.961 kb on - strand, within DZA65_RS04445 at 927.974 kb on + strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.981 kb on + strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 928.076 kb on + strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.291 kb on + strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.458 kb on - strand, within DZA65_RS04445 at 928.548 kb on - strand at 928.617 kb on + strand at 928.653 kb on - strand at 928.653 kb on - strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.672 kb on - strand at 928.672 kb on - strand at 928.737 kb on + strand at 928.972 kb on - strand, within DZA65_RS04450 at 929.065 kb on + strand at 929.065 kb on + strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.089 kb on - strand at 929.097 kb on - strand at 929.099 kb on + strand at 929.099 kb on + strand at 929.100 kb on - strand at 929.103 kb on + strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.704 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.777 kb on + strand, within DZA65_RS04455 at 929.778 kb on - strand, within DZA65_RS04455 at 929.795 kb on + strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.934 kb on + strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.973 kb on - strand, within DZA65_RS04455
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 927,739 + DZA65_RS04445 0.42 -0.1 927,740 - DZA65_RS04445 0.42 +0.3 927,740 - DZA65_RS04445 0.42 +1.9 927,810 + DZA65_RS04445 0.46 -1.1 927,810 + DZA65_RS04445 0.46 -1.8 927,810 + DZA65_RS04445 0.46 -1.5 927,810 + DZA65_RS04445 0.46 -2.7 927,810 + DZA65_RS04445 0.46 -2.8 927,810 + DZA65_RS04445 0.46 -0.1 927,810 + DZA65_RS04445 0.46 -1.8 927,810 + DZA65_RS04445 0.46 -2.6 927,810 + DZA65_RS04445 0.46 -0.4 927,810 + -0.7 927,811 - DZA65_RS04445 0.46 +1.1 927,811 - DZA65_RS04445 0.46 -0.7 927,811 - DZA65_RS04445 0.46 -1.7 927,811 - DZA65_RS04445 0.46 -1.6 927,811 - DZA65_RS04445 0.46 -0.7 927,811 - DZA65_RS04445 0.46 -2.2 927,811 - DZA65_RS04445 0.46 -1.1 927,811 - DZA65_RS04445 0.46 +0.3 927,811 - DZA65_RS04445 0.46 -1.3 927,811 - DZA65_RS04445 0.46 +0.3 927,811 - DZA65_RS04445 0.46 -2.1 927,811 - DZA65_RS04445 0.46 +0.3 927,811 - DZA65_RS04445 0.46 -1.1 927,811 - DZA65_RS04445 0.46 -1.3 927,811 - DZA65_RS04445 0.46 -0.1 927,813 + DZA65_RS04445 0.47 -0.7 927,813 + DZA65_RS04445 0.47 -0.9 927,814 - DZA65_RS04445 0.47 -2.5 927,814 - DZA65_RS04445 0.47 +0.2 927,916 + DZA65_RS04445 0.53 +0.3 927,916 + DZA65_RS04445 0.53 -0.3 927,916 + DZA65_RS04445 0.53 -0.1 927,917 - DZA65_RS04445 0.53 -0.6 927,917 - DZA65_RS04445 0.53 -0.9 927,917 - DZA65_RS04445 0.53 -1.3 927,917 - DZA65_RS04445 0.53 -1.3 927,917 - DZA65_RS04445 0.53 +0.6 927,917 - DZA65_RS04445 0.53 -2.2 927,961 - DZA65_RS04445 0.56 +0.9 927,974 + DZA65_RS04445 0.57 -0.1 927,975 - DZA65_RS04445 0.57 +0.9 927,975 - DZA65_RS04445 0.57 -0.1 927,975 - DZA65_RS04445 0.57 -1.3 927,981 + DZA65_RS04445 0.57 -2.4 927,982 - DZA65_RS04445 0.57 +0.1 927,982 - DZA65_RS04445 0.57 -1.8 927,982 - DZA65_RS04445 0.57 -0.1 928,076 + DZA65_RS04445 0.63 -0.1 928,077 - DZA65_RS04445 0.63 +0.5 928,077 - DZA65_RS04445 0.63 -0.4 928,077 - DZA65_RS04445 0.63 -1.1 928,192 + DZA65_RS04445 0.71 +0.3 928,192 + DZA65_RS04445 0.71 -1.3 928,192 + DZA65_RS04445 0.71 -1.7 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 +1.5 928,192 + DZA65_RS04445 0.71 -0.9 928,192 + DZA65_RS04445 0.71 -1.7 928,192 + DZA65_RS04445 0.71 +0.9 928,192 + DZA65_RS04445 0.71 -1.5 928,193 - DZA65_RS04445 0.71 -0.7 928,193 - DZA65_RS04445 0.71 +0.2 928,193 - DZA65_RS04445 0.71 -0.8 928,193 - DZA65_RS04445 0.71 -1.5 928,193 - DZA65_RS04445 0.71 +0.3 928,193 - DZA65_RS04445 0.71 +0.3 928,193 - DZA65_RS04445 0.71 +0.1 928,193 - DZA65_RS04445 0.71 -1.1 928,193 - DZA65_RS04445 0.71 +0.6 928,291 + DZA65_RS04445 0.77 +0.3 928,292 - DZA65_RS04445 0.77 -0.9 928,292 - DZA65_RS04445 0.77 +0.3 928,329 + DZA65_RS04445 0.79 +0.6 928,329 + DZA65_RS04445 0.79 -0.7 928,329 + DZA65_RS04445 0.79 -1.2 928,329 + DZA65_RS04445 0.79 -0.1 928,330 - DZA65_RS04445 0.79 -1.1 928,330 - DZA65_RS04445 0.79 -0.3 928,330 - DZA65_RS04445 0.79 +0.6 928,330 - DZA65_RS04445 0.79 -0.4 928,330 - DZA65_RS04445 0.79 -1.8 928,458 - DZA65_RS04445 0.88 -0.4 928,548 - -0.2 928,617 + +0.9 928,653 - -0.6 928,653 - -1.4 928,655 + +1.1 928,655 + -0.4 928,655 + -0.7 928,655 + +0.3 928,656 - +0.9 928,656 - -1.1 928,656 - -2.4 928,672 - +0.3 928,672 - -0.3 928,737 + -0.9 928,972 - DZA65_RS04450 0.73 -0.1 929,065 + +0.3 929,065 + -0.5 929,066 - -0.6 929,066 - -0.4 929,066 - -2.2 929,089 - -0.4 929,097 - -2.3 929,099 + -0.9 929,099 + -1.4 929,100 - -0.1 929,103 + -0.7 929,104 - -0.3 929,104 - -0.9 929,104 - -1.4 929,146 + -0.8 929,146 + -1.1 929,146 + -0.7 929,147 - -2.3 929,147 - -1.3 929,147 - +1.9 929,147 - -0.9 929,149 + +1.9 929,149 + -1.0 929,149 + -1.7 929,149 + -1.8 929,149 + +0.7 929,149 + -0.1 929,149 + -0.1 929,150 - +0.3 929,150 - -1.3 929,150 - +0.6 929,150 - +1.1 929,150 - -1.6 929,150 - -0.7 929,150 - -0.5 929,150 - +0.3 929,150 - +0.3 929,150 - -0.9 929,150 - +0.3 929,150 - -2.0 929,150 - -0.4 929,150 - -0.7 929,150 - -0.4 929,704 + DZA65_RS04455 0.42 -0.7 929,726 + DZA65_RS04455 0.43 -0.3 929,726 + DZA65_RS04455 0.43 -2.2 929,726 + DZA65_RS04455 0.43 -0.8 929,726 + DZA65_RS04455 0.43 -0.1 929,726 + DZA65_RS04455 0.43 -1.5 929,726 + DZA65_RS04455 0.43 -0.5 929,726 + DZA65_RS04455 0.43 +0.3 929,726 + DZA65_RS04455 0.43 -0.1 929,727 - DZA65_RS04455 0.43 +0.3 929,727 - DZA65_RS04455 0.43 -2.0 929,727 - DZA65_RS04455 0.43 -1.3 929,727 - DZA65_RS04455 0.43 +0.0 929,727 - DZA65_RS04455 0.43 -1.3 929,727 - DZA65_RS04455 0.43 +1.2 929,727 - DZA65_RS04455 0.43 -0.1 929,777 + DZA65_RS04455 0.47 -1.7 929,778 - DZA65_RS04455 0.47 -1.8 929,795 + DZA65_RS04455 0.48 -1.4 929,796 - DZA65_RS04455 0.48 -1.8 929,796 - DZA65_RS04455 0.48 -0.4 929,934 + DZA65_RS04455 0.58 -1.1 929,935 - DZA65_RS04455 0.58 -2.0 929,935 - DZA65_RS04455 0.58 +0.9 929,973 - DZA65_RS04455 0.61 -2.0
Or see this region's nucleotide sequence