Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04265 and DZA65_RS04270 are separated by 57 nucleotides DZA65_RS04270 and DZA65_RS04275 overlap by 4 nucleotides
DZA65_RS04265: DZA65_RS04265 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 889,239 to 891,518
_RS04265
DZA65_RS04270: DZA65_RS04270 - YaiI/YqxD family protein, at 891,576 to 892,025
_RS04270
DZA65_RS04275: DZA65_RS04275 - oxygen-dependent coproporphyrinogen oxidase, at 892,022 to 892,960
_RS04275
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.767 kb on - strand, within DZA65_RS04265 at 890.778 kb on + strand, within DZA65_RS04265 at 890.779 kb on - strand, within DZA65_RS04265 at 890.779 kb on - strand, within DZA65_RS04265 at 890.912 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.939 kb on - strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.015 kb on - strand, within DZA65_RS04265 at 891.015 kb on - strand, within DZA65_RS04265 at 891.020 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.270 kb on - strand, within DZA65_RS04265 at 891.317 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.430 kb on + strand at 891.430 kb on + strand at 891.516 kb on + strand at 891.516 kb on + strand at 891.560 kb on + strand at 891.560 kb on + strand at 891.561 kb on - strand at 891.639 kb on + strand, within DZA65_RS04270 at 891.639 kb on + strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.663 kb on + strand, within DZA65_RS04270 at 891.683 kb on + strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.722 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand at 891.911 kb on + strand, within DZA65_RS04270 at 891.911 kb on + strand, within DZA65_RS04270 at 892.045 kb on + strand at 892.232 kb on + strand, within DZA65_RS04275 at 892.861 kb on + strand, within DZA65_RS04275 at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.998 kb on + strand at 892.998 kb on + strand at 893.011 kb on + strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 890,767 - DZA65_RS04265 0.67 +1.9 890,778 + DZA65_RS04265 0.68 -3.6 890,779 - DZA65_RS04265 0.68 -1.4 890,779 - DZA65_RS04265 0.68 -1.4 890,912 + DZA65_RS04265 0.73 +2.1 890,916 + DZA65_RS04265 0.74 +1.1 890,916 + DZA65_RS04265 0.74 +1.9 890,916 + DZA65_RS04265 0.74 -0.1 890,916 + DZA65_RS04265 0.74 -2.2 890,916 + DZA65_RS04265 0.74 -1.0 890,916 + DZA65_RS04265 0.74 -2.2 890,916 + DZA65_RS04265 0.74 -0.1 890,916 + DZA65_RS04265 0.74 -1.6 890,916 + DZA65_RS04265 0.74 -1.6 890,917 - DZA65_RS04265 0.74 -1.2 890,917 - DZA65_RS04265 0.74 -3.6 890,917 - DZA65_RS04265 0.74 +0.9 890,939 - DZA65_RS04265 0.75 -0.9 891,014 + DZA65_RS04265 0.78 -0.9 891,014 + DZA65_RS04265 0.78 -1.1 891,014 + DZA65_RS04265 0.78 -0.4 891,014 + DZA65_RS04265 0.78 -0.6 891,014 + DZA65_RS04265 0.78 -0.1 891,015 - DZA65_RS04265 0.78 -0.1 891,015 - DZA65_RS04265 0.78 +0.6 891,020 + DZA65_RS04265 0.78 -0.9 891,033 + DZA65_RS04265 0.79 -2.9 891,033 + DZA65_RS04265 0.79 +1.9 891,033 + DZA65_RS04265 0.79 -2.6 891,033 + DZA65_RS04265 0.79 -0.5 891,033 + DZA65_RS04265 0.79 -1.2 891,033 + DZA65_RS04265 0.79 -0.4 891,033 + DZA65_RS04265 0.79 +0.9 891,033 + DZA65_RS04265 0.79 -0.6 891,033 + DZA65_RS04265 0.79 -1.1 891,033 + DZA65_RS04265 0.79 -0.2 891,033 + DZA65_RS04265 0.79 -0.6 891,033 + DZA65_RS04265 0.79 -0.4 891,033 + DZA65_RS04265 0.79 -0.9 891,033 + DZA65_RS04265 0.79 -0.4 891,034 - DZA65_RS04265 0.79 -0.1 891,034 - DZA65_RS04265 0.79 -0.6 891,034 - DZA65_RS04265 0.79 +0.4 891,034 - DZA65_RS04265 0.79 -0.6 891,034 - DZA65_RS04265 0.79 +0.6 891,034 - DZA65_RS04265 0.79 -0.1 891,034 - DZA65_RS04265 0.79 -2.0 891,034 - DZA65_RS04265 0.79 -1.6 891,034 - DZA65_RS04265 0.79 -2.5 891,034 - DZA65_RS04265 0.79 +0.6 891,034 - DZA65_RS04265 0.79 +3.5 891,034 - DZA65_RS04265 0.79 -0.4 891,270 - DZA65_RS04265 0.89 -2.6 891,317 + +1.4 891,357 + +0.3 891,357 + -1.2 891,357 + -0.4 891,357 + -1.5 891,357 + +0.1 891,357 + +0.3 891,358 - -1.5 891,358 - -0.7 891,358 - -0.7 891,358 - -1.4 891,430 + -0.7 891,430 + -1.1 891,516 + -0.4 891,516 + -1.9 891,560 + +1.5 891,560 + -0.7 891,561 - -1.5 891,639 + DZA65_RS04270 0.14 +0.9 891,639 + DZA65_RS04270 0.14 -1.5 891,640 - DZA65_RS04270 0.14 -1.1 891,640 - DZA65_RS04270 0.14 -0.7 891,640 - DZA65_RS04270 0.14 -0.8 891,663 + DZA65_RS04270 0.19 -2.2 891,683 + DZA65_RS04270 0.24 -2.2 891,684 - DZA65_RS04270 0.24 -1.2 891,684 - DZA65_RS04270 0.24 -1.0 891,684 - DZA65_RS04270 0.24 -1.2 891,722 + DZA65_RS04270 0.32 -2.1 891,733 + DZA65_RS04270 0.35 -0.3 891,733 + DZA65_RS04270 0.35 +1.7 891,733 + DZA65_RS04270 0.35 +0.3 891,733 + -0.9 891,911 + DZA65_RS04270 0.74 -0.5 891,911 + DZA65_RS04270 0.74 -0.1 892,045 + -1.0 892,232 + DZA65_RS04275 0.22 -0.1 892,861 + DZA65_RS04275 0.89 -0.9 892,961 - -0.1 892,961 - +0.6 892,961 - -0.7 892,961 - +1.9 892,971 - +1.9 892,971 - -2.2 892,971 - -0.4 892,998 + -0.1 892,998 + -1.8 893,011 + -2.1 893,012 - +0.8 893,012 - -0.2 893,012 - +0.3 893,012 - -2.1 893,012 - -0.4 893,014 + -0.1 893,014 + -1.4 893,014 + -0.7 893,015 - -2.3 893,015 - +1.3 893,015 - -0.3 893,015 - -0.4 893,020 + +0.6 893,020 + -0.1 893,020 + +0.1 893,020 + -1.7 893,020 + -1.8 893,020 + -2.0 893,020 + -0.9 893,020 + -1.5 893,020 + +0.6 893,020 + -2.1 893,020 + -2.6 893,020 + -0.5 893,020 + -1.0 893,020 + -0.9 893,021 - -0.3 893,021 - -0.1 893,021 - +1.1 893,021 - -1.2 893,021 - -0.9 893,023 + -1.1 893,023 + +0.3 893,023 + -1.7 893,023 + +1.3 893,023 + +0.9 893,023 + -2.7 893,024 - +0.3 893,024 - -0.2 893,024 - +2.2 893,024 - -0.4 893,024 - +0.9 893,024 - -0.7 893,024 - +0.3 893,024 - -1.2 893,024 - -1.1 893,024 - +0.1 893,025 + -1.1
Or see this region's nucleotide sequence