Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04040 and DZA65_RS04045 overlap by 4 nucleotides DZA65_RS04045 and DZA65_RS04050 overlap by 1 nucleotides DZA65_RS04050 and DZA65_RS04055 overlap by 4 nucleotides
DZA65_RS04040: DZA65_RS04040 - hypothetical protein, at 852,546 to 852,776
_RS04040
DZA65_RS04045: DZA65_RS04045 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 852,773 to 853,729
_RS04045
DZA65_RS04050: DZA65_RS04050 - DNA cytosine methyltransferase, at 853,729 to 854,557
_RS04050
DZA65_RS04055: DZA65_RS04055 - replication endonuclease, at 854,554 to 856,608
_RS04055
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 852.773 kb on - strand at 852.773 kb on - strand at 852.847 kb on - strand at 852.920 kb on + strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.959 kb on + strand, within DZA65_RS04045 at 853.028 kb on - strand, within DZA65_RS04045 at 853.040 kb on + strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.043 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.110 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.166 kb on - strand, within DZA65_RS04045 at 853.197 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.359 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.496 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.683 kb on - strand at 853.683 kb on - strand at 853.683 kb on - strand at 853.745 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.828 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.913 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.128 kb on - strand, within DZA65_RS04050 at 854.154 kb on - strand, within DZA65_RS04050 at 854.220 kb on - strand, within DZA65_RS04050 at 854.302 kb on + strand, within DZA65_RS04050 at 854.314 kb on + strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.352 kb on - strand, within DZA65_RS04050 at 854.394 kb on + strand, within DZA65_RS04050 at 854.395 kb on - strand, within DZA65_RS04050 at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.522 kb on + strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.524 kb on + strand at 854.524 kb on + strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.535 kb on - strand at 854.535 kb on - strand at 854.564 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.654 kb on - strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.680 kb on - strand at 854.710 kb on + strand at 854.711 kb on - strand at 854.731 kb on + strand at 854.731 kb on + strand at 854.743 kb on + strand at 854.743 kb on + strand at 854.808 kb on + strand, within DZA65_RS04055 at 854.808 kb on + strand, within DZA65_RS04055 at 854.809 kb on - strand, within DZA65_RS04055 at 854.809 kb on - strand, within DZA65_RS04055 at 854.817 kb on - strand, within DZA65_RS04055 at 854.817 kb on - strand at 854.817 kb on - strand, within DZA65_RS04055 at 854.840 kb on + strand, within DZA65_RS04055 at 854.840 kb on + strand, within DZA65_RS04055 at 854.873 kb on - strand, within DZA65_RS04055 at 854.917 kb on + strand, within DZA65_RS04055 at 854.917 kb on + strand, within DZA65_RS04055 at 854.918 kb on - strand, within DZA65_RS04055 at 855.013 kb on + strand, within DZA65_RS04055 at 855.014 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.101 kb on + strand, within DZA65_RS04055 at 855.102 kb on - strand, within DZA65_RS04055 at 855.124 kb on + strand, within DZA65_RS04055 at 855.141 kb on + strand at 855.188 kb on + strand, within DZA65_RS04055 at 855.189 kb on - strand, within DZA65_RS04055 at 855.189 kb on - strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.256 kb on - strand at 855.256 kb on - strand, within DZA65_RS04055 at 855.256 kb on - strand, within DZA65_RS04055 at 855.256 kb on - strand, within DZA65_RS04055 at 855.299 kb on - strand, within DZA65_RS04055 at 855.554 kb on + strand, within DZA65_RS04055 at 855.555 kb on - strand, within DZA65_RS04055 at 855.555 kb on - strand, within DZA65_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 852,773 - -2.9 852,773 - -0.9 852,847 - +1.4 852,920 + DZA65_RS04045 0.15 -1.6 852,921 - DZA65_RS04045 0.15 -2.1 852,921 - DZA65_RS04045 0.15 +0.7 852,959 + DZA65_RS04045 0.19 +1.9 853,028 - DZA65_RS04045 0.27 -0.9 853,040 + DZA65_RS04045 0.28 -0.9 853,041 - DZA65_RS04045 0.28 +0.9 853,041 - DZA65_RS04045 0.28 -1.1 853,043 + DZA65_RS04045 0.28 -1.8 853,059 + DZA65_RS04045 0.30 -2.1 853,059 + DZA65_RS04045 0.30 +1.2 853,059 + DZA65_RS04045 0.30 +1.4 853,060 - DZA65_RS04045 0.30 +0.5 853,060 - DZA65_RS04045 0.30 -0.4 853,060 - DZA65_RS04045 0.30 -1.3 853,060 - DZA65_RS04045 0.30 -1.1 853,060 - DZA65_RS04045 0.30 +0.6 853,060 - DZA65_RS04045 0.30 +0.2 853,110 - DZA65_RS04045 0.35 -0.1 853,146 - DZA65_RS04045 0.39 -0.8 853,146 - DZA65_RS04045 0.39 +0.4 853,166 - DZA65_RS04045 0.41 -1.6 853,197 - DZA65_RS04045 0.44 -0.9 853,323 - DZA65_RS04045 0.57 +0.6 853,323 - DZA65_RS04045 0.57 -0.4 853,323 - DZA65_RS04045 0.57 +0.4 853,323 - DZA65_RS04045 0.57 -1.1 853,323 - DZA65_RS04045 0.57 -0.9 853,323 - DZA65_RS04045 0.57 -1.1 853,323 - DZA65_RS04045 0.57 -2.6 853,323 - DZA65_RS04045 0.57 -1.5 853,323 - DZA65_RS04045 0.57 -1.2 853,323 - DZA65_RS04045 0.57 -0.7 853,323 - DZA65_RS04045 0.57 -1.1 853,323 - DZA65_RS04045 0.57 +0.4 853,323 - DZA65_RS04045 0.57 +2.4 853,323 - DZA65_RS04045 0.57 -0.9 853,323 - DZA65_RS04045 0.57 -1.6 853,323 - DZA65_RS04045 0.57 -0.5 853,359 - DZA65_RS04045 0.61 -0.1 853,392 - DZA65_RS04045 0.65 -0.1 853,392 - DZA65_RS04045 0.65 -1.9 853,392 - DZA65_RS04045 0.65 -1.1 853,392 - DZA65_RS04045 0.65 -0.4 853,392 - DZA65_RS04045 0.65 +0.4 853,392 - DZA65_RS04045 0.65 -1.2 853,414 - DZA65_RS04045 0.67 -0.2 853,414 - DZA65_RS04045 0.67 +0.9 853,414 - DZA65_RS04045 0.67 +0.9 853,435 - DZA65_RS04045 0.69 -1.1 853,435 - DZA65_RS04045 0.69 -0.3 853,435 - DZA65_RS04045 0.69 -1.1 853,482 - DZA65_RS04045 0.74 +1.6 853,482 - DZA65_RS04045 0.74 +0.4 853,482 - DZA65_RS04045 0.74 -0.4 853,482 - DZA65_RS04045 0.74 -0.4 853,482 - DZA65_RS04045 0.74 -0.1 853,496 - DZA65_RS04045 0.76 -0.4 853,603 - DZA65_RS04045 0.87 -1.6 853,603 - DZA65_RS04045 0.87 -1.4 853,603 - DZA65_RS04045 0.87 -0.8 853,603 - DZA65_RS04045 0.87 -2.6 853,603 - DZA65_RS04045 0.87 -1.2 853,683 - +0.2 853,683 - -1.4 853,683 - -1.6 853,745 - -1.5 853,748 - -0.1 853,748 - -0.1 853,748 - +0.9 853,748 - +0.4 853,748 - -0.8 853,748 - -0.8 853,791 - -0.4 853,791 - +1.1 853,791 - -0.4 853,791 - +0.9 853,791 - -2.7 853,791 - -1.3 853,828 - DZA65_RS04050 0.12 -1.1 853,864 - DZA65_RS04050 0.16 -1.0 853,864 - DZA65_RS04050 0.16 +0.4 853,864 - DZA65_RS04050 0.16 -1.0 853,913 - DZA65_RS04050 0.22 +0.4 854,029 - DZA65_RS04050 0.36 -2.2 854,029 - DZA65_RS04050 0.36 +0.9 854,029 - DZA65_RS04050 0.36 -0.4 854,029 - DZA65_RS04050 0.36 -2.1 854,029 - DZA65_RS04050 0.36 -0.4 854,029 - DZA65_RS04050 0.36 +0.9 854,128 - DZA65_RS04050 0.48 +0.4 854,154 - DZA65_RS04050 0.51 +2.3 854,220 - DZA65_RS04050 0.59 -1.1 854,302 + DZA65_RS04050 0.69 -1.2 854,314 + DZA65_RS04050 0.71 -1.8 854,315 - DZA65_RS04050 0.71 -0.6 854,315 - DZA65_RS04050 0.71 +1.5 854,315 - DZA65_RS04050 0.71 -1.4 854,348 - DZA65_RS04050 0.75 -0.3 854,348 - DZA65_RS04050 0.75 +2.3 854,348 - DZA65_RS04050 0.75 -2.1 854,348 - DZA65_RS04050 0.75 +0.9 854,352 - DZA65_RS04050 0.75 -0.1 854,394 + DZA65_RS04050 0.80 -0.3 854,395 - DZA65_RS04050 0.80 -1.2 854,505 + -0.2 854,505 + +0.9 854,505 + +1.9 854,505 + -0.5 854,505 + -1.4 854,505 + +0.4 854,506 - -0.6 854,506 - -0.1 854,506 - +0.1 854,506 - -2.3 854,506 - -0.9 854,506 - +0.4 854,522 + -0.1 854,523 - -0.1 854,523 - +0.4 854,523 - -0.1 854,523 - +2.5 854,524 + -1.4 854,524 + -0.4 854,525 - +1.4 854,525 - +0.9 854,525 - -0.4 854,525 - +0.9 854,525 - +0.6 854,525 - -0.4 854,525 - -2.1 854,525 - -0.4 854,525 - -0.1 854,525 - -0.8 854,525 - +0.4 854,525 - +1.4 854,525 - -1.6 854,525 - +0.1 854,525 - -1.4 854,525 - -1.6 854,525 - -0.2 854,525 - -1.5 854,525 - -2.3 854,535 - -2.0 854,535 - -1.1 854,564 + +0.4 854,653 + -0.1 854,653 + -1.4 854,653 + +0.4 854,653 + +0.1 854,653 + +0.2 854,653 + -1.9 854,653 + -0.6 854,654 - +0.6 854,669 + -1.4 854,669 + -0.6 854,669 + -1.2 854,670 - +0.9 854,670 - +0.9 854,670 - -1.1 854,680 - -0.6 854,710 + -2.9 854,711 - -2.0 854,731 + -1.1 854,731 + +0.0 854,743 + -0.4 854,743 + -1.1 854,808 + DZA65_RS04055 0.12 -0.4 854,808 + DZA65_RS04055 0.12 -1.9 854,809 - DZA65_RS04055 0.12 -1.6 854,809 - DZA65_RS04055 0.12 +0.6 854,817 - DZA65_RS04055 0.13 +0.4 854,817 - -0.1 854,817 - DZA65_RS04055 0.13 -1.1 854,840 + DZA65_RS04055 0.14 +0.5 854,840 + DZA65_RS04055 0.14 -0.1 854,873 - DZA65_RS04055 0.16 -2.3 854,917 + DZA65_RS04055 0.18 -1.1 854,917 + DZA65_RS04055 0.18 +2.9 854,918 - DZA65_RS04055 0.18 -2.3 855,013 + DZA65_RS04055 0.22 -0.4 855,014 - DZA65_RS04055 0.22 -0.5 855,048 - DZA65_RS04055 0.24 -1.2 855,048 - DZA65_RS04055 0.24 +0.4 855,048 - DZA65_RS04055 0.24 -2.2 855,101 + DZA65_RS04055 0.27 -1.2 855,102 - DZA65_RS04055 0.27 -0.1 855,124 + DZA65_RS04055 0.28 +0.9 855,141 + -0.6 855,188 + DZA65_RS04055 0.31 -1.4 855,189 - DZA65_RS04055 0.31 +1.9 855,189 - DZA65_RS04055 0.31 +0.9 855,255 + DZA65_RS04055 0.34 +2.5 855,255 + DZA65_RS04055 0.34 -2.1 855,255 + DZA65_RS04055 0.34 +0.1 855,256 - +0.6 855,256 - DZA65_RS04055 0.34 -2.8 855,256 - DZA65_RS04055 0.34 -0.4 855,256 - DZA65_RS04055 0.34 +0.9 855,299 - DZA65_RS04055 0.36 -1.4 855,554 + DZA65_RS04055 0.49 -0.5 855,555 - DZA65_RS04055 0.49 -0.4 855,555 - DZA65_RS04055 0.49 -0.4
Or see this region's nucleotide sequence