Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03985 and DZA65_RS03995 are separated by 441 nucleotides DZA65_RS03995 and DZA65_RS04000 are separated by 34 nucleotides
DZA65_RS03985: DZA65_RS03985 - phage capsid size determination protein, at 844,335 to 845,081
_RS03985
DZA65_RS03995: DZA65_RS03995 - AAA family ATPase, at 845,523 to 847,271
_RS03995
DZA65_RS04000: DZA65_RS04000 - tyrosine-type recombinase/integrase, at 847,306 to 848,493
_RS04000
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.597 kb on + strand, within DZA65_RS03985 at 844.598 kb on - strand, within DZA65_RS03985 at 844.598 kb on - strand at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.776 kb on - strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.844 kb on + strand, within DZA65_RS03985 at 844.922 kb on + strand, within DZA65_RS03985 at 844.923 kb on - strand, within DZA65_RS03985 at 845.091 kb on + strand at 845.091 kb on + strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.122 kb on - strand at 845.133 kb on - strand at 845.133 kb on - strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.195 kb on - strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.251 kb on + strand at 845.251 kb on + strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.278 kb on - strand at 845.290 kb on + strand at 845.296 kb on + strand at 845.296 kb on + strand at 845.306 kb on + strand at 845.338 kb on - strand at 845.351 kb on + strand at 845.352 kb on - strand at 845.353 kb on + strand at 845.362 kb on + strand at 845.362 kb on + strand at 845.363 kb on - strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.379 kb on - strand at 845.387 kb on + strand at 845.387 kb on + strand at 845.388 kb on - strand at 845.418 kb on + strand at 845.419 kb on - strand at 845.419 kb on - strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.482 kb on - strand at 845.531 kb on - strand at 845.562 kb on - strand at 845.633 kb on + strand at 845.679 kb on - strand at 845.896 kb on - strand, within DZA65_RS03995 at 845.909 kb on + strand, within DZA65_RS03995 at 845.910 kb on - strand, within DZA65_RS03995 at 846.110 kb on - strand, within DZA65_RS03995 at 846.308 kb on + strand, within DZA65_RS03995 at 846.321 kb on + strand, within DZA65_RS03995 at 846.322 kb on - strand, within DZA65_RS03995 at 846.345 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.348 kb on - strand, within DZA65_RS03995 at 846.348 kb on - strand, within DZA65_RS03995 at 846.383 kb on - strand, within DZA65_RS03995 at 846.409 kb on + strand, within DZA65_RS03995 at 846.409 kb on + strand, within DZA65_RS03995 at 846.410 kb on - strand, within DZA65_RS03995 at 846.489 kb on - strand, within DZA65_RS03995 at 846.519 kb on + strand, within DZA65_RS03995 at 846.584 kb on - strand, within DZA65_RS03995 at 846.633 kb on - strand, within DZA65_RS03995 at 846.689 kb on - strand, within DZA65_RS03995 at 846.721 kb on - strand, within DZA65_RS03995 at 846.747 kb on - strand, within DZA65_RS03995 at 846.806 kb on - strand, within DZA65_RS03995 at 846.809 kb on - strand, within DZA65_RS03995 at 847.084 kb on + strand, within DZA65_RS03995 at 847.290 kb on + strand at 847.292 kb on + strand at 847.308 kb on - strand at 847.311 kb on + strand at 847.312 kb on - strand at 847.312 kb on - strand at 847.322 kb on - strand at 847.322 kb on - strand at 847.322 kb on - strand at 847.361 kb on + strand at 847.362 kb on - strand at 847.365 kb on + strand at 847.375 kb on - strand at 847.376 kb on + strand at 847.376 kb on + strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.437 kb on + strand, within DZA65_RS04000 at 847.438 kb on - strand, within DZA65_RS04000 at 847.468 kb on + strand, within DZA65_RS04000 at 847.478 kb on - strand, within DZA65_RS04000 at 847.519 kb on + strand, within DZA65_RS04000 at 847.558 kb on - strand, within DZA65_RS04000 at 847.558 kb on - strand, within DZA65_RS04000 at 847.567 kb on - strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.584 kb on - strand, within DZA65_RS04000 at 847.584 kb on - strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.756 kb on - strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.837 kb on + strand, within DZA65_RS04000 at 847.838 kb on - strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.864 kb on - strand, within DZA65_RS04000 at 847.864 kb on - strand, within DZA65_RS04000 at 847.893 kb on + strand, within DZA65_RS04000 at 847.899 kb on + strand, within DZA65_RS04000 at 847.900 kb on - strand, within DZA65_RS04000 at 847.900 kb on - strand, within DZA65_RS04000 at 847.943 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.970 kb on - strand, within DZA65_RS04000 at 847.970 kb on - strand, within DZA65_RS04000 at 847.970 kb on - strand at 848.026 kb on + strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.133 kb on + strand, within DZA65_RS04000 at 848.133 kb on + strand, within DZA65_RS04000 at 848.157 kb on + strand, within DZA65_RS04000 at 848.158 kb on - strand, within DZA65_RS04000 at 848.185 kb on + strand, within DZA65_RS04000 at 848.236 kb on + strand, within DZA65_RS04000 at 848.236 kb on + strand, within DZA65_RS04000 at 848.237 kb on - strand, within DZA65_RS04000 at 848.237 kb on - strand, within DZA65_RS04000 at 848.237 kb on - strand at 848.237 kb on - strand, within DZA65_RS04000
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 844,597 + DZA65_RS03985 0.35 -0.3 844,598 - DZA65_RS03985 0.35 -1.4 844,598 - -1.5 844,632 + DZA65_RS03985 0.40 -0.9 844,632 + DZA65_RS03985 0.40 +1.9 844,632 + DZA65_RS03985 0.40 -0.6 844,632 + DZA65_RS03985 0.40 -1.0 844,633 - DZA65_RS03985 0.40 -0.5 844,633 - DZA65_RS03985 0.40 -0.1 844,712 + DZA65_RS03985 0.50 +0.9 844,712 + DZA65_RS03985 0.50 -1.8 844,712 + DZA65_RS03985 0.50 +0.6 844,712 + DZA65_RS03985 0.50 -0.1 844,713 - DZA65_RS03985 0.51 -2.0 844,713 - DZA65_RS03985 0.51 +0.4 844,713 - DZA65_RS03985 0.51 -0.9 844,756 + DZA65_RS03985 0.56 -0.1 844,756 + DZA65_RS03985 0.56 -0.6 844,756 + DZA65_RS03985 0.56 -0.5 844,776 - DZA65_RS03985 0.59 +0.0 844,781 + DZA65_RS03985 0.60 -0.1 844,781 + DZA65_RS03985 0.60 +0.1 844,807 + DZA65_RS03985 0.63 +0.4 844,807 + DZA65_RS03985 0.63 -0.4 844,844 + DZA65_RS03985 0.68 +0.1 844,922 + DZA65_RS03985 0.79 -0.4 844,923 - DZA65_RS03985 0.79 -0.6 845,091 + +0.4 845,091 + -1.2 845,092 - -0.1 845,092 - +1.9 845,092 - +0.4 845,092 - -0.4 845,092 - -0.6 845,092 - -0.1 845,092 - -0.6 845,092 - +1.4 845,092 - -1.2 845,092 - -0.4 845,092 - -0.9 845,092 - -1.8 845,092 - -1.1 845,093 + -0.4 845,093 + -1.9 845,093 + +0.4 845,093 + +1.9 845,093 + -2.1 845,094 - -0.2 845,094 - -0.3 845,094 - -0.1 845,094 - -0.9 845,094 - +1.3 845,121 + -2.7 845,121 + -0.1 845,121 + -0.4 845,122 - +1.9 845,133 - +0.9 845,133 - -0.1 845,194 + +0.9 845,194 + -0.1 845,194 + +1.9 845,195 - +0.4 845,198 + -1.4 845,198 + -0.4 845,198 + +1.9 845,198 + +1.9 845,199 - -2.0 845,199 - -1.7 845,199 - -2.5 845,199 - -0.1 845,251 + -2.1 845,251 + -1.1 845,252 - +0.9 845,252 - -1.4 845,252 - -1.5 845,252 - -1.8 845,252 - -2.4 845,278 - -0.6 845,290 + -0.6 845,296 + +0.9 845,296 + -1.9 845,306 + -1.6 845,338 - +1.5 845,351 + +0.9 845,352 - -1.5 845,353 + -0.1 845,362 + -1.6 845,362 + +0.4 845,363 - -1.4 845,378 + +0.1 845,378 + +0.7 845,378 + +0.4 845,378 + -0.2 845,379 - +0.1 845,387 + -1.1 845,387 + -0.6 845,388 - -0.4 845,418 + -2.4 845,419 - -1.1 845,419 - -3.0 845,479 + +1.1 845,479 + -2.6 845,479 + -1.5 845,482 - +1.4 845,531 - +0.4 845,562 - -1.8 845,633 + -0.4 845,679 - -1.4 845,896 - DZA65_RS03995 0.21 -0.1 845,909 + DZA65_RS03995 0.22 +0.7 845,910 - DZA65_RS03995 0.22 -0.7 846,110 - DZA65_RS03995 0.34 +0.9 846,308 + DZA65_RS03995 0.45 -1.6 846,321 + DZA65_RS03995 0.46 -1.1 846,322 - DZA65_RS03995 0.46 -0.4 846,345 + DZA65_RS03995 0.47 -1.9 846,347 + DZA65_RS03995 0.47 -1.3 846,347 + DZA65_RS03995 0.47 -0.9 846,347 + DZA65_RS03995 0.47 -1.2 846,347 + DZA65_RS03995 0.47 -0.9 846,347 + DZA65_RS03995 0.47 +0.7 846,347 + DZA65_RS03995 0.47 +1.2 846,347 + DZA65_RS03995 0.47 +1.9 846,348 - DZA65_RS03995 0.47 -1.9 846,348 - DZA65_RS03995 0.47 +0.6 846,383 - DZA65_RS03995 0.49 +0.1 846,409 + DZA65_RS03995 0.51 -0.4 846,409 + DZA65_RS03995 0.51 -1.4 846,410 - DZA65_RS03995 0.51 +0.9 846,489 - DZA65_RS03995 0.55 +1.9 846,519 + DZA65_RS03995 0.57 -1.1 846,584 - DZA65_RS03995 0.61 -2.3 846,633 - DZA65_RS03995 0.63 +1.9 846,689 - DZA65_RS03995 0.67 +0.9 846,721 - DZA65_RS03995 0.68 -0.4 846,747 - DZA65_RS03995 0.70 +0.3 846,806 - DZA65_RS03995 0.73 +0.4 846,809 - DZA65_RS03995 0.74 -2.0 847,084 + DZA65_RS03995 0.89 -0.5 847,290 + -0.5 847,292 + -0.8 847,308 - -0.6 847,311 + -1.4 847,312 - -0.6 847,312 - -2.1 847,322 - -0.4 847,322 - -1.1 847,322 - +0.9 847,361 + -2.4 847,362 - -0.3 847,365 + -0.2 847,375 - -2.1 847,376 + +0.1 847,376 + -0.8 847,377 - -2.2 847,377 - -0.4 847,377 - +0.9 847,377 - -1.7 847,377 - +0.9 847,437 + DZA65_RS04000 0.11 -0.3 847,438 - DZA65_RS04000 0.11 -2.3 847,468 + DZA65_RS04000 0.14 -1.8 847,478 - DZA65_RS04000 0.14 -0.4 847,519 + DZA65_RS04000 0.18 -2.3 847,558 - DZA65_RS04000 0.21 -0.3 847,558 - DZA65_RS04000 0.21 -0.4 847,567 - DZA65_RS04000 0.22 -1.5 847,583 + DZA65_RS04000 0.23 +0.6 847,583 + DZA65_RS04000 0.23 -0.6 847,583 + DZA65_RS04000 0.23 +0.2 847,584 - DZA65_RS04000 0.23 -1.2 847,584 - DZA65_RS04000 0.23 +0.4 847,653 + DZA65_RS04000 0.29 -1.1 847,653 + DZA65_RS04000 0.29 -0.6 847,653 + DZA65_RS04000 0.29 -0.4 847,653 + DZA65_RS04000 0.29 -0.1 847,653 + DZA65_RS04000 0.29 -0.2 847,654 - DZA65_RS04000 0.29 -1.1 847,654 - DZA65_RS04000 0.29 -1.1 847,654 - DZA65_RS04000 0.29 -0.9 847,654 - DZA65_RS04000 0.29 -2.3 847,654 - DZA65_RS04000 0.29 -0.5 847,654 - DZA65_RS04000 0.29 -2.0 847,654 - DZA65_RS04000 0.29 -1.6 847,654 - DZA65_RS04000 0.29 -2.3 847,756 - DZA65_RS04000 0.38 -1.3 847,765 + DZA65_RS04000 0.39 -2.6 847,765 + DZA65_RS04000 0.39 +0.4 847,765 + DZA65_RS04000 0.39 -0.9 847,765 + DZA65_RS04000 0.39 +2.4 847,765 + DZA65_RS04000 0.39 -1.4 847,765 + DZA65_RS04000 0.39 +0.6 847,766 - DZA65_RS04000 0.39 -0.8 847,766 - DZA65_RS04000 0.39 +1.2 847,766 - DZA65_RS04000 0.39 -1.4 847,766 - DZA65_RS04000 0.39 -1.2 847,766 - DZA65_RS04000 0.39 +0.4 847,766 - DZA65_RS04000 0.39 +0.1 847,766 - DZA65_RS04000 0.39 -1.1 847,766 - DZA65_RS04000 0.39 +1.2 847,806 + DZA65_RS04000 0.42 +0.0 847,806 + DZA65_RS04000 0.42 -2.6 847,806 + DZA65_RS04000 0.42 -1.2 847,807 - DZA65_RS04000 0.42 -1.8 847,807 - DZA65_RS04000 0.42 -2.1 847,807 - DZA65_RS04000 0.42 +0.9 847,807 - DZA65_RS04000 0.42 -0.6 847,837 + DZA65_RS04000 0.45 +1.9 847,838 - DZA65_RS04000 0.45 -1.6 847,863 + DZA65_RS04000 0.47 -0.6 847,863 + DZA65_RS04000 0.47 -3.3 847,863 + DZA65_RS04000 0.47 -3.1 847,863 + DZA65_RS04000 0.47 +0.1 847,863 + DZA65_RS04000 0.47 -0.9 847,863 + DZA65_RS04000 0.47 +0.5 847,864 - DZA65_RS04000 0.47 -1.1 847,864 - DZA65_RS04000 0.47 -0.1 847,893 + DZA65_RS04000 0.49 -1.1 847,899 + DZA65_RS04000 0.50 -0.6 847,900 - DZA65_RS04000 0.50 -2.4 847,900 - DZA65_RS04000 0.50 +0.9 847,943 + DZA65_RS04000 0.54 -0.9 847,969 + DZA65_RS04000 0.56 -1.2 847,969 + DZA65_RS04000 0.56 -0.6 847,969 + DZA65_RS04000 0.56 -1.2 847,969 + DZA65_RS04000 0.56 -1.6 847,970 - DZA65_RS04000 0.56 -2.2 847,970 - DZA65_RS04000 0.56 +1.5 847,970 - -0.9 848,026 + DZA65_RS04000 0.61 -0.1 848,027 - DZA65_RS04000 0.61 -1.8 848,027 - DZA65_RS04000 0.61 +0.1 848,027 - DZA65_RS04000 0.61 -2.5 848,027 - DZA65_RS04000 0.61 +0.1 848,027 - DZA65_RS04000 0.61 -0.6 848,133 + DZA65_RS04000 0.70 -1.8 848,133 + DZA65_RS04000 0.70 -0.9 848,157 + DZA65_RS04000 0.72 -0.1 848,158 - DZA65_RS04000 0.72 -1.2 848,185 + DZA65_RS04000 0.74 +0.1 848,236 + DZA65_RS04000 0.78 +0.2 848,236 + DZA65_RS04000 0.78 -0.9 848,237 - DZA65_RS04000 0.78 -0.7 848,237 - DZA65_RS04000 0.78 -2.2 848,237 - +1.9 848,237 - DZA65_RS04000 0.78 -0.1
Or see this region's nucleotide sequence