Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03335 and DZA65_RS03340 are separated by 2 nucleotides DZA65_RS03340 and DZA65_RS03345 are separated by 11 nucleotides DZA65_RS03345 and DZA65_RS03355 are separated by 466 nucleotides
DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222
_RS03335
DZA65_RS03340: DZA65_RS03340 - adenine phosphoribosyltransferase, at 707,225 to 707,785
_RS03340
DZA65_RS03345: DZA65_RS03345 - cysteine synthase family protein, at 707,797 to 708,735
_RS03345
DZA65_RS03355: DZA65_RS03355 - hypothetical protein, at 709,202 to 709,573
_RS03355
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 706.913 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.914 kb on - strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.936 kb on - strand, within DZA65_RS03335 at 707.061 kb on - strand, within DZA65_RS03335 at 707.189 kb on - strand at 707.189 kb on - strand at 707.207 kb on + strand at 707.276 kb on + strand at 707.276 kb on + strand at 707.346 kb on - strand, within DZA65_RS03340 at 707.385 kb on - strand, within DZA65_RS03340 at 707.431 kb on + strand, within DZA65_RS03340 at 707.436 kb on - strand, within DZA65_RS03340 at 707.467 kb on - strand, within DZA65_RS03340 at 707.518 kb on - strand, within DZA65_RS03340 at 707.530 kb on + strand, within DZA65_RS03340 at 707.532 kb on + strand, within DZA65_RS03340 at 707.551 kb on + strand, within DZA65_RS03340 at 707.555 kb on + strand, within DZA65_RS03340 at 707.654 kb on + strand, within DZA65_RS03340 at 707.655 kb on - strand at 707.666 kb on + strand, within DZA65_RS03340 at 707.667 kb on - strand, within DZA65_RS03340 at 707.691 kb on - strand, within DZA65_RS03340 at 707.750 kb on + strand at 707.840 kb on + strand at 707.840 kb on + strand at 707.893 kb on - strand, within DZA65_RS03345 at 708.004 kb on + strand, within DZA65_RS03345 at 708.071 kb on - strand, within DZA65_RS03345 at 708.252 kb on + strand, within DZA65_RS03345 at 708.348 kb on + strand, within DZA65_RS03345 at 708.349 kb on - strand, within DZA65_RS03345 at 708.608 kb on - strand, within DZA65_RS03345 at 708.619 kb on - strand, within DZA65_RS03345 at 708.700 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.718 kb on + strand at 708.746 kb on + strand at 708.752 kb on - strand at 708.767 kb on + strand at 708.769 kb on + strand at 708.769 kb on + strand at 708.770 kb on - strand at 708.785 kb on + strand at 708.885 kb on - strand at 708.898 kb on + strand at 708.898 kb on + strand at 708.901 kb on + strand at 708.902 kb on - strand at 708.904 kb on - strand at 708.906 kb on + strand at 708.907 kb on - strand at 708.907 kb on - strand at 708.908 kb on + strand at 708.909 kb on - strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 709.029 kb on + strand at 709.030 kb on - strand at 709.038 kb on + strand at 709.038 kb on + strand at 709.137 kb on - strand at 709.245 kb on - strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.285 kb on - strand, within DZA65_RS03355 at 709.491 kb on + strand, within DZA65_RS03355 at 709.537 kb on + strand at 709.537 kb on + strand at 709.538 kb on - strand at 709.538 kb on - strand at 709.542 kb on - strand at 709.574 kb on - strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.589 kb on - strand at 709.667 kb on - strand at 709.719 kb on + strand at 709.719 kb on + strand at 709.720 kb on - strand at 709.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 706,913 + DZA65_RS03335 0.53 -1.8 706,913 + DZA65_RS03335 0.53 -0.0 706,914 - DZA65_RS03335 0.53 -1.2 706,917 + DZA65_RS03335 0.54 -0.6 706,917 + DZA65_RS03335 0.54 -0.3 706,917 + DZA65_RS03335 0.54 +1.0 706,936 - DZA65_RS03335 0.57 -0.8 707,061 - DZA65_RS03335 0.75 -0.6 707,189 - -0.2 707,189 - +1.1 707,207 + -1.6 707,276 + +1.0 707,276 + -0.6 707,346 - DZA65_RS03340 0.22 +1.0 707,385 - DZA65_RS03340 0.29 +2.0 707,431 + DZA65_RS03340 0.37 -1.0 707,436 - DZA65_RS03340 0.38 +1.4 707,467 - DZA65_RS03340 0.43 +0.4 707,518 - DZA65_RS03340 0.52 -0.0 707,530 + DZA65_RS03340 0.54 -0.9 707,532 + DZA65_RS03340 0.55 -0.3 707,551 + DZA65_RS03340 0.58 +0.4 707,555 + DZA65_RS03340 0.59 +0.7 707,654 + DZA65_RS03340 0.76 -1.3 707,655 - -0.5 707,666 + DZA65_RS03340 0.79 -0.0 707,667 - DZA65_RS03340 0.79 +1.3 707,691 - DZA65_RS03340 0.83 -0.8 707,750 + +0.4 707,840 + -0.8 707,840 + -0.0 707,893 - DZA65_RS03345 0.10 +2.0 708,004 + DZA65_RS03345 0.22 +0.4 708,071 - DZA65_RS03345 0.29 -0.3 708,252 + DZA65_RS03345 0.48 -0.3 708,348 + DZA65_RS03345 0.59 +0.4 708,349 - DZA65_RS03345 0.59 -0.0 708,608 - DZA65_RS03345 0.86 -0.0 708,619 - DZA65_RS03345 0.88 -0.8 708,700 + -2.7 708,703 + -0.6 708,704 - -0.0 708,718 + -1.3 708,746 + -0.3 708,752 - +0.3 708,767 + -1.4 708,769 + -1.2 708,769 + +0.4 708,770 - -1.0 708,785 + -0.5 708,885 - -0.3 708,898 + -2.4 708,898 + +0.1 708,901 + -0.5 708,902 - -1.0 708,904 - -2.3 708,906 + +0.1 708,907 - -1.0 708,907 - +3.0 708,908 + -1.5 708,909 - -1.4 708,973 + -1.4 708,973 + -0.8 708,973 + +0.4 708,973 + -1.3 708,973 + +1.0 708,973 + +0.6 708,973 + -0.8 708,973 + -0.0 708,973 + -2.0 708,973 + +0.2 708,973 + +0.4 708,973 + -0.7 708,973 + +1.0 708,973 + -1.9 708,973 + +0.4 708,974 - -1.8 708,974 - +1.0 708,974 - +1.0 708,974 - -2.7 708,974 - -0.6 708,974 - +1.0 708,974 - -0.3 708,974 - -0.0 709,029 + +1.4 709,030 - -1.5 709,038 + -1.3 709,038 + -1.0 709,137 - -0.2 709,245 - DZA65_RS03355 0.12 -1.6 709,284 + DZA65_RS03355 0.22 +1.0 709,284 + DZA65_RS03355 0.22 -0.0 709,285 - DZA65_RS03355 0.22 -0.5 709,491 + DZA65_RS03355 0.78 +0.4 709,537 + -0.0 709,537 + -1.8 709,538 - -1.3 709,538 - -1.5 709,542 - -0.3 709,574 - -0.8 709,588 + -0.3 709,588 + -0.8 709,588 + -0.0 709,589 - -0.7 709,667 - +1.0 709,719 + +0.4 709,719 + -2.2 709,720 - -1.0 709,720 - -0.6
Or see this region's nucleotide sequence