Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03180

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03175 and DZA65_RS03180 are separated by 264 nucleotidesDZA65_RS03180 and DZA65_RS03185 are separated by 123 nucleotidesDZA65_RS03185 and DZA65_RS03190 are separated by 157 nucleotides DZA65_RS03175: DZA65_RS03175 - serine-type D-Ala-D-Ala carboxypeptidase, at 674,044 to 675,477 _RS03175 DZA65_RS03180: DZA65_RS03180 - transcription elongation factor GreA, at 675,742 to 676,218 _RS03180 DZA65_RS03185: DZA65_RS03185 - ribosome assembly RNA-binding protein YhbY, at 676,342 to 676,635 _RS03185 DZA65_RS03190: DZA65_RS03190 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 676,793 to 677,422 _RS03190 Position (kb) 675 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 674.832 kb on - strand, within DZA65_RS03175at 674.894 kb on + strand, within DZA65_RS03175at 674.894 kb on + strand, within DZA65_RS03175at 674.895 kb on - strand, within DZA65_RS03175at 674.895 kb on - strand, within DZA65_RS03175at 674.895 kb on - strand, within DZA65_RS03175at 674.895 kb on - strand, within DZA65_RS03175at 674.940 kb on + strand, within DZA65_RS03175at 674.941 kb on - strand, within DZA65_RS03175at 674.942 kb on + strand, within DZA65_RS03175at 674.942 kb on + strand, within DZA65_RS03175at 674.942 kb on + strand, within DZA65_RS03175at 674.942 kb on + strand, within DZA65_RS03175at 674.942 kb on + strand, within DZA65_RS03175at 674.943 kb on - strand, within DZA65_RS03175at 674.943 kb on - strand, within DZA65_RS03175at 675.013 kb on - strand, within DZA65_RS03175at 675.013 kb on - strand, within DZA65_RS03175at 675.073 kb on + strand, within DZA65_RS03175at 675.073 kb on + strand, within DZA65_RS03175at 675.073 kb on + strand, within DZA65_RS03175at 675.074 kb on - strand, within DZA65_RS03175at 675.074 kb on - strand, within DZA65_RS03175at 675.074 kb on - strand, within DZA65_RS03175at 675.118 kb on + strand, within DZA65_RS03175at 675.118 kb on + strand, within DZA65_RS03175at 675.118 kb on + strand, within DZA65_RS03175at 675.119 kb on - strand, within DZA65_RS03175at 675.187 kb on + strand, within DZA65_RS03175at 675.207 kb on + strand, within DZA65_RS03175at 675.207 kb on + strand, within DZA65_RS03175at 675.207 kb on + strand, within DZA65_RS03175at 675.207 kb on + strand, within DZA65_RS03175at 675.323 kb on + strand, within DZA65_RS03175at 675.340 kb on - strandat 675.392 kb on + strandat 675.393 kb on - strandat 675.401 kb on + strandat 675.401 kb on + strandat 675.402 kb on - strandat 675.402 kb on - strandat 675.402 kb on - strandat 675.478 kb on - strandat 675.478 kb on - strandat 675.492 kb on - strandat 675.492 kb on - strandat 675.512 kb on + strandat 675.512 kb on + strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.513 kb on - strandat 675.515 kb on + strandat 675.516 kb on - strandat 675.537 kb on + strandat 675.538 kb on - strandat 675.626 kb on + strandat 675.626 kb on + strandat 675.627 kb on - strandat 675.636 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.684 kb on + strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.685 kb on - strandat 675.727 kb on - strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.732 kb on + strandat 675.742 kb on - strandat 675.783 kb on - strandat 675.828 kb on + strand, within DZA65_RS03180at 675.828 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.883 kb on + strand, within DZA65_RS03180at 675.884 kb on - strand, within DZA65_RS03180at 675.884 kb on - strand, within DZA65_RS03180at 675.964 kb on - strand, within DZA65_RS03180at 676.012 kb on - strand, within DZA65_RS03180at 676.054 kb on + strand, within DZA65_RS03180at 676.054 kb on + strand, within DZA65_RS03180at 676.055 kb on - strand, within DZA65_RS03180at 676.055 kb on - strand, within DZA65_RS03180at 676.059 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.098 kb on + strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.099 kb on - strand, within DZA65_RS03180at 676.133 kb on + strand, within DZA65_RS03180at 676.184 kb on + strandat 676.184 kb on + strandat 676.185 kb on - strandat 676.185 kb on - strandat 676.210 kb on + strandat 676.211 kb on - strandat 676.211 kb on - strandat 676.251 kb on + strandat 676.251 kb on + strandat 676.279 kb on + strandat 676.383 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.535 kb on - strand, within DZA65_RS03185at 676.623 kb on + strandat 676.676 kb on + strandat 676.693 kb on + strandat 676.693 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.754 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.758 kb on + strandat 676.764 kb on + strandat 676.764 kb on + strandat 676.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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674,832 - DZA65_RS03175 0.55 -0.3
674,894 + DZA65_RS03175 0.59 -1.7
674,894 + DZA65_RS03175 0.59 +0.4
674,895 - DZA65_RS03175 0.59 -0.4
674,895 - DZA65_RS03175 0.59 -1.8
674,895 - DZA65_RS03175 0.59 -0.9
674,895 - DZA65_RS03175 0.59 -2.3
674,940 + DZA65_RS03175 0.62 +0.4
674,941 - DZA65_RS03175 0.63 +0.4
674,942 + DZA65_RS03175 0.63 -1.7
674,942 + DZA65_RS03175 0.63 -1.0
674,942 + DZA65_RS03175 0.63 -1.0
674,942 + DZA65_RS03175 0.63 -0.3
674,942 + DZA65_RS03175 0.63 -0.2
674,943 - DZA65_RS03175 0.63 -0.6
674,943 - DZA65_RS03175 0.63 +0.2
675,013 - DZA65_RS03175 0.68 -0.8
675,013 - DZA65_RS03175 0.68 +0.4
675,073 + DZA65_RS03175 0.72 -1.6
675,073 + DZA65_RS03175 0.72 -1.0
675,073 + DZA65_RS03175 0.72 -0.6
675,074 - DZA65_RS03175 0.72 -1.8
675,074 - DZA65_RS03175 0.72 -0.0
675,074 - DZA65_RS03175 0.72 +0.4
675,118 + DZA65_RS03175 0.75 +0.4
675,118 + DZA65_RS03175 0.75 -0.3
675,118 + DZA65_RS03175 0.75 -0.3
675,119 - DZA65_RS03175 0.75 -0.6
675,187 + DZA65_RS03175 0.80 -1.3
675,207 + DZA65_RS03175 0.81 +1.0
675,207 + DZA65_RS03175 0.81 -2.2
675,207 + DZA65_RS03175 0.81 -0.8
675,207 + DZA65_RS03175 0.81 +0.8
675,323 + DZA65_RS03175 0.89 -0.8
675,340 - -1.0
675,392 + -1.2
675,393 - +2.0
675,401 + -1.0
675,401 + -0.3
675,402 - +0.8
675,402 - -1.0
675,402 - -0.0
675,478 - -1.2
675,478 - -2.9
675,492 - +0.7
675,492 - -1.0
675,512 + -1.3
675,512 + -1.2
675,513 - -1.6
675,513 - -0.0
675,513 - +0.4
675,513 - -0.2
675,515 + -2.4
675,516 - -0.3
675,537 + -1.0
675,538 - -0.3
675,626 + -0.2
675,626 + -1.2
675,627 - +1.4
675,636 + -0.7
675,684 + -1.3
675,684 + -1.2
675,684 + -0.0
675,684 + -0.8
675,684 + +1.1
675,684 + -1.4
675,685 - +0.4
675,685 - -3.0
675,685 - -2.0
675,685 - -0.8
675,685 - -1.6
675,727 - -1.2
675,732 + -0.8
675,732 + -2.1
675,732 + -1.4
675,732 + -1.2
675,732 + +0.2
675,742 - +0.4
675,783 - -2.1
675,828 + DZA65_RS03180 0.18 -0.6
675,828 + DZA65_RS03180 0.18 -0.0
675,883 + DZA65_RS03180 0.30 -0.0
675,883 + DZA65_RS03180 0.30 -2.8
675,883 + DZA65_RS03180 0.30 -1.5
675,884 - DZA65_RS03180 0.30 -2.8
675,884 - DZA65_RS03180 0.30 -0.8
675,964 - DZA65_RS03180 0.47 -2.9
676,012 - DZA65_RS03180 0.57 -2.6
676,054 + DZA65_RS03180 0.65 +1.0
676,054 + DZA65_RS03180 0.65 -2.1
676,055 - DZA65_RS03180 0.66 -0.3
676,055 - DZA65_RS03180 0.66 -1.0
676,059 + DZA65_RS03180 0.66 +0.4
676,098 + DZA65_RS03180 0.75 -1.5
676,098 + DZA65_RS03180 0.75 -2.0
676,098 + DZA65_RS03180 0.75 -0.8
676,099 - DZA65_RS03180 0.75 -1.7
676,099 - DZA65_RS03180 0.75 +0.3
676,099 - DZA65_RS03180 0.75 -2.4
676,099 - DZA65_RS03180 0.75 -2.1
676,099 - DZA65_RS03180 0.75 -0.0
676,099 - DZA65_RS03180 0.75 -3.3
676,133 + DZA65_RS03180 0.82 -2.6
676,184 + -1.8
676,184 + -0.6
676,185 - -1.5
676,185 - -2.7
676,210 + -0.6
676,211 - +1.2
676,211 - -2.1
676,251 + -2.6
676,251 + -0.8
676,279 + -0.8
676,383 - DZA65_RS03185 0.14 -2.0
676,535 - DZA65_RS03185 0.66 -1.0
676,535 - DZA65_RS03185 0.66 -0.0
676,535 - DZA65_RS03185 0.66 -1.3
676,623 + +0.1
676,676 + -0.8
676,693 + -3.3
676,693 + -0.6
676,754 + -0.6
676,754 + -0.3
676,754 + -1.6
676,754 + -1.0
676,754 + -1.0
676,754 + -2.3
676,758 + -1.0
676,758 + -2.7
676,758 + -0.3
676,758 + -0.0
676,764 + -1.5
676,764 + -1.7
676,779 + -1.0

Or see this region's nucleotide sequence