Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02855 and DZA65_RS02860 are separated by 188 nucleotides DZA65_RS02860 and DZA65_RS02865 are separated by 49 nucleotides DZA65_RS02865 and DZA65_RS02870 are separated by 376 nucleotides DZA65_RS02870 and DZA65_RS02875 are separated by 21 nucleotides
DZA65_RS02855: DZA65_RS02855 - FxsA family protein, at 613,544 to 614,047
_RS02855
DZA65_RS02860: DZA65_RS02860 - co-chaperone GroES, at 614,236 to 614,529
_RS02860
DZA65_RS02865: DZA65_RS02865 - chaperonin GroEL, at 614,579 to 616,225
_RS02865
DZA65_RS02870: DZA65_RS02870 - chorismate lyase, at 616,602 to 617,117
_RS02870
DZA65_RS02875: DZA65_RS02875 - 4-hydroxybenzoate octaprenyltransferase, at 617,139 to 618,002
_RS02875
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.583 kb on + strand at 613.583 kb on + strand at 613.597 kb on + strand, within DZA65_RS02855 at 613.598 kb on - strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.688 kb on - strand, within DZA65_RS02855 at 613.763 kb on - strand, within DZA65_RS02855 at 613.776 kb on + strand, within DZA65_RS02855 at 613.791 kb on + strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 614.100 kb on + strand at 614.100 kb on + strand at 614.100 kb on + strand at 614.101 kb on - strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 616.223 kb on + strand at 616.223 kb on + strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.274 kb on - strand at 616.274 kb on - strand at 616.276 kb on - strand at 616.300 kb on + strand at 616.301 kb on - strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.357 kb on - strand at 616.357 kb on - strand at 616.357 kb on - strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.369 kb on - strand at 616.369 kb on - strand at 616.374 kb on + strand at 616.375 kb on - strand at 616.375 kb on - strand at 616.375 kb on - strand at 616.393 kb on - strand at 616.393 kb on - strand at 616.411 kb on + strand at 616.411 kb on + strand at 616.411 kb on + strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.550 kb on + strand at 616.555 kb on + strand at 616.555 kb on + strand at 616.556 kb on - strand at 616.556 kb on - strand at 616.556 kb on - strand at 616.575 kb on + strand at 616.575 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.600 kb on - strand at 616.600 kb on - strand at 616.600 kb on - strand at 616.700 kb on + strand, within DZA65_RS02870 at 616.700 kb on + strand, within DZA65_RS02870 at 616.700 kb on + strand, within DZA65_RS02870 at 616.825 kb on + strand, within DZA65_RS02870 at 616.825 kb on + strand, within DZA65_RS02870 at 616.826 kb on - strand, within DZA65_RS02870 at 616.826 kb on - strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.865 kb on - strand, within DZA65_RS02870 at 616.874 kb on + strand, within DZA65_RS02870 at 616.918 kb on + strand, within DZA65_RS02870 at 617.091 kb on + strand at 617.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 613,583 + +0.0 613,583 + +0.4 613,597 + DZA65_RS02855 0.11 -0.6 613,598 - DZA65_RS02855 0.11 -0.8 613,678 + DZA65_RS02855 0.27 -1.6 613,678 + DZA65_RS02855 0.27 +0.8 613,678 + DZA65_RS02855 0.27 -1.0 613,678 + DZA65_RS02855 0.27 +0.2 613,678 + DZA65_RS02855 0.27 -1.5 613,678 + DZA65_RS02855 0.27 +0.4 613,678 + DZA65_RS02855 0.27 -1.5 613,679 - DZA65_RS02855 0.27 -0.8 613,679 - DZA65_RS02855 0.27 +0.5 613,679 - DZA65_RS02855 0.27 +1.5 613,679 - DZA65_RS02855 0.27 +0.6 613,683 + DZA65_RS02855 0.28 +0.4 613,683 + DZA65_RS02855 0.28 -2.6 613,683 + DZA65_RS02855 0.28 +0.5 613,683 + DZA65_RS02855 0.28 -1.8 613,683 + DZA65_RS02855 0.28 -0.3 613,683 + DZA65_RS02855 0.28 -1.0 613,683 + DZA65_RS02855 0.28 -1.3 613,683 + DZA65_RS02855 0.28 -0.8 613,683 + DZA65_RS02855 0.28 -1.1 613,684 - DZA65_RS02855 0.28 -0.6 613,684 - DZA65_RS02855 0.28 -0.2 613,684 - DZA65_RS02855 0.28 +0.2 613,684 - DZA65_RS02855 0.28 -1.8 613,684 - DZA65_RS02855 0.28 +0.4 613,687 + DZA65_RS02855 0.28 -1.7 613,687 + DZA65_RS02855 0.28 +0.4 613,688 - DZA65_RS02855 0.29 -2.2 613,763 - DZA65_RS02855 0.43 -1.0 613,776 + DZA65_RS02855 0.46 +0.1 613,791 + DZA65_RS02855 0.49 -0.3 613,792 - DZA65_RS02855 0.49 -1.5 613,792 - DZA65_RS02855 0.49 -0.3 613,792 - DZA65_RS02855 0.49 -0.7 614,100 + -0.3 614,100 + -1.5 614,100 + +0.4 614,101 - +0.8 614,154 + -0.0 614,154 + -2.4 614,154 + -1.6 614,154 + +0.8 614,154 + -0.0 614,154 + -1.0 616,223 + -0.6 616,223 + -1.0 616,224 - -1.0 616,224 - -2.3 616,224 - +0.4 616,224 - +0.2 616,224 - -0.3 616,274 - -1.8 616,274 - +1.4 616,276 - -2.5 616,300 + -0.0 616,301 - -0.0 616,350 + +0.2 616,350 + -0.0 616,350 + -0.3 616,350 + -0.3 616,350 + -0.6 616,350 + -1.9 616,350 + -0.3 616,350 + +1.0 616,350 + -0.0 616,350 + -0.0 616,350 + +0.4 616,350 + -0.8 616,350 + -0.3 616,350 + -1.3 616,350 + +1.0 616,350 + -1.2 616,350 + -0.8 616,351 - -0.2 616,351 - -0.6 616,351 - -2.5 616,351 - -1.5 616,351 - +1.0 616,351 - +0.4 616,351 - +0.4 616,351 - -0.7 616,351 - -1.2 616,351 - +1.0 616,351 - -0.0 616,351 - -0.8 616,351 - +2.0 616,351 - -1.5 616,351 - +0.2 616,351 - -0.6 616,351 - -1.0 616,351 - -0.9 616,351 - +0.4 616,351 - -2.1 616,351 - -0.3 616,351 - -0.6 616,351 - -1.2 616,351 - +0.7 616,351 - -2.0 616,351 - -0.3 616,351 - -0.3 616,351 - -1.2 616,351 - +2.0 616,356 + -1.0 616,356 + -2.2 616,356 + +0.2 616,356 + -2.2 616,357 - -0.8 616,357 - +1.0 616,357 - +0.2 616,368 + -1.0 616,368 + -1.2 616,368 + -0.3 616,368 + -0.9 616,368 + -0.0 616,368 + -0.3 616,368 + -2.3 616,368 + +0.4 616,368 + -1.0 616,368 + -0.8 616,368 + +1.0 616,368 + -1.1 616,368 + -2.2 616,369 - -0.9 616,369 - -1.2 616,374 + +1.0 616,375 - -1.0 616,375 - -0.5 616,375 - -1.3 616,393 - -0.3 616,393 - -0.3 616,411 + +1.0 616,411 + -1.6 616,411 + -0.3 616,412 - -3.0 616,412 - -0.1 616,412 - -0.0 616,412 - +0.4 616,412 - -1.2 616,461 + -0.2 616,461 + +2.0 616,461 + +0.4 616,461 + -0.6 616,461 + -1.2 616,462 - -2.9 616,462 - -1.1 616,462 - -2.3 616,462 - +1.0 616,462 - +0.4 616,462 - -1.6 616,462 - +1.2 616,550 + -0.3 616,555 + -0.3 616,555 + -1.8 616,556 - -0.5 616,556 - -1.9 616,556 - +0.2 616,575 + +0.4 616,575 + -1.3 616,599 + -0.2 616,599 + +1.0 616,599 + -1.3 616,599 + -0.6 616,599 + +1.4 616,599 + -1.1 616,599 + -0.3 616,600 - -2.5 616,600 - -0.9 616,600 - +0.4 616,700 + DZA65_RS02870 0.19 +0.4 616,700 + DZA65_RS02870 0.19 -0.6 616,700 + DZA65_RS02870 0.19 +0.7 616,825 + DZA65_RS02870 0.43 -1.0 616,825 + DZA65_RS02870 0.43 +1.0 616,826 - DZA65_RS02870 0.43 -0.3 616,826 - DZA65_RS02870 0.43 +1.0 616,864 + DZA65_RS02870 0.51 +0.7 616,864 + DZA65_RS02870 0.51 +1.0 616,864 + DZA65_RS02870 0.51 -0.7 616,864 + DZA65_RS02870 0.51 +0.3 616,865 - DZA65_RS02870 0.51 -1.8 616,874 + DZA65_RS02870 0.53 +0.1 616,918 + DZA65_RS02870 0.61 -0.3 617,091 + -0.1 617,091 + -0.6
Or see this region's nucleotide sequence