Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02535 and DZA65_RS02540 are separated by 402 nucleotides DZA65_RS02540 and DZA65_RS02545 are separated by 31 nucleotides DZA65_RS02545 and DZA65_RS02550 are separated by 278 nucleotides
DZA65_RS02535: DZA65_RS02535 - HAMP domain-containing protein, at 544,640 to 546,346
_RS02535
DZA65_RS02540: DZA65_RS02540 - amidohydrolase, at 546,749 to 547,918
_RS02540
DZA65_RS02545: DZA65_RS02545 - hypothetical protein, at 547,950 to 548,207
_RS02545
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
Position (kb) 546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.010 kb on + strand, within DZA65_RS02535 at 546.085 kb on + strand, within DZA65_RS02535 at 546.086 kb on - strand, within DZA65_RS02535 at 546.086 kb on - strand, within DZA65_RS02535 at 546.110 kb on - strand, within DZA65_RS02535 at 546.226 kb on + strand at 546.227 kb on - strand at 546.313 kb on + strand at 546.314 kb on - strand at 546.377 kb on - strand at 546.427 kb on + strand at 546.462 kb on - strand at 546.495 kb on + strand at 546.527 kb on + strand at 546.527 kb on + strand at 546.527 kb on + strand at 546.529 kb on + strand at 546.529 kb on + strand at 546.529 kb on + strand at 546.530 kb on - strand at 546.533 kb on - strand at 546.541 kb on + strand at 546.541 kb on + strand at 546.541 kb on + strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.543 kb on + strand at 546.543 kb on + strand at 546.544 kb on - strand at 546.544 kb on - strand at 546.544 kb on - strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.640 kb on - strand at 546.647 kb on + strand at 546.648 kb on - strand at 546.648 kb on - strand at 546.772 kb on + strand at 546.772 kb on + strand at 546.773 kb on - strand at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.120 kb on - strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.303 kb on + strand, within DZA65_RS02540 at 547.304 kb on - strand, within DZA65_RS02540 at 547.389 kb on + strand, within DZA65_RS02540 at 547.400 kb on - strand, within DZA65_RS02540 at 547.441 kb on + strand, within DZA65_RS02540 at 547.442 kb on - strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.493 kb on - strand, within DZA65_RS02540 at 547.493 kb on - strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.594 kb on - strand at 547.594 kb on - strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.746 kb on - strand at 547.752 kb on + strand, within DZA65_RS02540 at 547.752 kb on + strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.773 kb on - strand, within DZA65_RS02540 at 547.829 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 548.221 kb on + strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.272 kb on + strand at 548.284 kb on + strand at 548.288 kb on - strand at 548.302 kb on - strand at 548.303 kb on + strand at 548.304 kb on - strand at 548.351 kb on + strand at 548.351 kb on + strand at 548.352 kb on - strand at 548.352 kb on - strand at 548.352 kb on - strand at 548.360 kb on + strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.389 kb on - strand at 548.415 kb on - strand at 548.428 kb on - strand at 548.428 kb on - strand at 548.508 kb on + strand at 548.509 kb on - strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.560 kb on + strand at 548.561 kb on - strand at 548.561 kb on - strand at 548.575 kb on + strand, within DZA65_RS02550 at 548.576 kb on - strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.696 kb on - strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.796 kb on + strand, within DZA65_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 546,010 + DZA65_RS02535 0.80 -1.8 546,085 + DZA65_RS02535 0.85 -0.8 546,086 - DZA65_RS02535 0.85 -0.8 546,086 - DZA65_RS02535 0.85 +1.4 546,110 - DZA65_RS02535 0.86 -1.3 546,226 + -1.0 546,227 - -0.0 546,313 + +0.7 546,314 - -1.0 546,377 - -2.6 546,427 + -2.6 546,462 - -2.2 546,495 + -1.7 546,527 + -0.1 546,527 + +0.8 546,527 + -0.9 546,529 + -0.2 546,529 + +1.4 546,529 + -2.9 546,530 - +1.0 546,533 - +1.0 546,541 + +1.0 546,541 + -2.0 546,541 + +2.3 546,542 - -0.0 546,542 - -1.5 546,542 - -0.6 546,542 - -1.3 546,543 + -0.8 546,543 + -2.2 546,544 - -1.0 546,544 - -0.3 546,544 - -1.3 546,587 + -1.0 546,587 + +0.3 546,587 + -0.3 546,587 + -1.2 546,587 + -1.8 546,587 + -1.2 546,587 + -1.2 546,587 + -2.5 546,587 + -0.6 546,587 + +2.3 546,588 - -1.5 546,588 - -0.0 546,588 - -1.2 546,588 - +0.2 546,588 - -2.0 546,602 + -0.3 546,602 + +0.2 546,602 + -0.0 546,602 + -1.3 546,602 + -0.6 546,602 + +0.4 546,602 + -2.2 546,602 + -1.0 546,602 + -0.6 546,602 + -1.8 546,602 + -0.3 546,602 + -0.3 546,603 - +0.4 546,603 - -0.0 546,603 - -1.5 546,603 - -0.2 546,603 - -1.3 546,603 - +0.1 546,603 - -0.8 546,603 - -2.0 546,616 + +0.4 546,616 + -2.6 546,616 + -2.1 546,616 + +2.0 546,616 + -0.3 546,616 + -1.2 546,616 + -1.9 546,616 + -1.5 546,616 + -1.6 546,616 + -1.3 546,616 + -0.0 546,617 - -0.0 546,617 - -0.2 546,617 - -0.3 546,617 - +1.0 546,617 - -1.3 546,640 - -1.7 546,647 + +3.0 546,648 - -1.1 546,648 - -0.6 546,772 + -0.2 546,772 + -0.8 546,773 - -2.6 547,030 + DZA65_RS02540 0.24 -1.6 547,030 + DZA65_RS02540 0.24 -0.7 547,030 + DZA65_RS02540 0.24 -2.0 547,030 + DZA65_RS02540 0.24 -1.2 547,030 + DZA65_RS02540 0.24 +0.4 547,030 + +0.4 547,030 + DZA65_RS02540 0.24 +0.4 547,030 + DZA65_RS02540 0.24 -1.7 547,030 + DZA65_RS02540 0.24 -0.7 547,030 + DZA65_RS02540 0.24 -0.7 547,030 + DZA65_RS02540 0.24 -1.0 547,031 - DZA65_RS02540 0.24 +1.0 547,031 - DZA65_RS02540 0.24 +0.4 547,031 - DZA65_RS02540 0.24 -1.6 547,031 - DZA65_RS02540 0.24 -0.6 547,031 - DZA65_RS02540 0.24 -0.0 547,031 - DZA65_RS02540 0.24 -0.3 547,031 - DZA65_RS02540 0.24 +0.4 547,031 - DZA65_RS02540 0.24 -1.5 547,031 - DZA65_RS02540 0.24 +0.3 547,119 + DZA65_RS02540 0.32 -0.8 547,119 + DZA65_RS02540 0.32 +1.6 547,119 + DZA65_RS02540 0.32 -0.3 547,119 + DZA65_RS02540 0.32 +2.0 547,119 + DZA65_RS02540 0.32 -0.5 547,120 - DZA65_RS02540 0.32 -0.5 547,210 + DZA65_RS02540 0.39 -1.7 547,210 + DZA65_RS02540 0.39 -0.0 547,210 + DZA65_RS02540 0.39 -1.5 547,210 + DZA65_RS02540 0.39 +3.6 547,210 + DZA65_RS02540 0.39 +0.4 547,211 - DZA65_RS02540 0.39 -1.6 547,211 - DZA65_RS02540 0.39 -0.6 547,211 - DZA65_RS02540 0.39 +0.4 547,211 - DZA65_RS02540 0.39 -1.1 547,211 - DZA65_RS02540 0.39 -0.3 547,211 - DZA65_RS02540 0.39 +1.0 547,211 - DZA65_RS02540 0.39 -1.8 547,215 - DZA65_RS02540 0.40 -1.0 547,215 - DZA65_RS02540 0.40 +0.7 547,215 - DZA65_RS02540 0.40 +1.2 547,215 - DZA65_RS02540 0.40 -0.6 547,303 + DZA65_RS02540 0.47 -1.0 547,304 - DZA65_RS02540 0.47 -2.2 547,389 + DZA65_RS02540 0.55 -0.6 547,400 - DZA65_RS02540 0.56 +0.7 547,441 + DZA65_RS02540 0.59 -1.2 547,442 - DZA65_RS02540 0.59 -2.5 547,492 + DZA65_RS02540 0.64 -1.9 547,492 + DZA65_RS02540 0.64 -0.3 547,492 + DZA65_RS02540 0.64 -0.8 547,493 - DZA65_RS02540 0.64 +0.7 547,493 - DZA65_RS02540 0.64 +0.4 547,562 + DZA65_RS02540 0.69 -0.8 547,562 + DZA65_RS02540 0.69 -2.9 547,562 + DZA65_RS02540 0.69 -0.6 547,562 + DZA65_RS02540 0.69 -1.3 547,562 + DZA65_RS02540 0.69 +0.2 547,562 + DZA65_RS02540 0.69 -0.1 547,562 + DZA65_RS02540 0.69 -0.0 547,562 + DZA65_RS02540 0.69 -0.6 547,562 + DZA65_RS02540 0.69 +0.1 547,563 - DZA65_RS02540 0.70 +2.0 547,563 - DZA65_RS02540 0.70 -0.2 547,563 - DZA65_RS02540 0.70 +0.4 547,563 - DZA65_RS02540 0.70 -0.0 547,594 - -1.3 547,594 - DZA65_RS02540 0.72 -2.4 547,745 + DZA65_RS02540 0.85 -1.0 547,745 + DZA65_RS02540 0.85 -0.0 547,745 + DZA65_RS02540 0.85 +1.0 547,745 + DZA65_RS02540 0.85 -0.9 547,746 - -1.0 547,752 + DZA65_RS02540 0.86 +0.1 547,752 + DZA65_RS02540 0.86 -2.1 547,753 - DZA65_RS02540 0.86 +1.3 547,753 - DZA65_RS02540 0.86 -1.2 547,753 - DZA65_RS02540 0.86 +0.6 547,773 - DZA65_RS02540 0.88 -0.3 547,829 + -0.3 547,947 + -1.0 547,947 + +2.0 547,947 + +2.0 547,947 + +0.4 547,947 + +1.0 547,947 + -0.8 547,947 + +0.4 547,947 + -1.0 547,948 - +1.2 547,948 - -0.0 547,948 - -1.0 547,948 - -0.0 547,948 - -1.2 547,948 - -1.2 547,948 - -0.8 547,948 - +0.4 547,948 - -1.0 547,948 - +0.1 547,948 - -0.3 547,948 - +2.0 547,948 - -0.8 548,221 + -0.3 548,222 - -0.3 548,222 - +0.4 548,222 - +1.7 548,222 - +0.5 548,250 + -0.0 548,250 + -0.0 548,250 + -0.5 548,250 + -1.3 548,250 + -0.2 548,251 - +1.0 548,251 - -0.1 548,251 - -0.6 548,251 - -0.8 548,272 + +1.2 548,284 + -0.1 548,288 - -2.0 548,302 - +0.2 548,303 + -1.5 548,304 - -0.8 548,351 + +1.0 548,351 + -0.6 548,352 - -1.5 548,352 - +1.2 548,352 - -0.9 548,360 + -0.3 548,361 - -0.6 548,361 - +2.0 548,361 - +0.7 548,361 - -0.3 548,361 - -3.4 548,389 - -1.6 548,415 - -0.3 548,428 - +1.0 548,428 - -1.5 548,508 + +1.0 548,509 - -1.0 548,517 + -0.0 548,517 + -1.3 548,517 + -1.3 548,560 + +0.4 548,561 - -1.5 548,561 - -0.7 548,575 + DZA65_RS02550 0.11 -0.9 548,576 - DZA65_RS02550 0.11 -0.6 548,695 + DZA65_RS02550 0.26 -0.6 548,695 + DZA65_RS02550 0.26 +1.6 548,696 - DZA65_RS02550 0.26 -0.5 548,792 + DZA65_RS02550 0.38 +1.4 548,792 + DZA65_RS02550 0.38 -0.7 548,792 + DZA65_RS02550 0.38 +0.4 548,792 + DZA65_RS02550 0.38 +2.0 548,792 + DZA65_RS02550 0.38 -0.8 548,792 + DZA65_RS02550 0.38 -0.3 548,792 + DZA65_RS02550 0.38 +0.2 548,792 + DZA65_RS02550 0.38 -3.6 548,792 + DZA65_RS02550 0.38 -0.3 548,792 + DZA65_RS02550 0.38 -1.5 548,793 - DZA65_RS02550 0.38 +3.0 548,793 - DZA65_RS02550 0.38 -0.0 548,793 - DZA65_RS02550 0.38 +0.2 548,793 - DZA65_RS02550 0.38 -2.2 548,793 - DZA65_RS02550 0.38 +0.1 548,793 - DZA65_RS02550 0.38 -1.1 548,793 - DZA65_RS02550 0.38 +1.4 548,793 - DZA65_RS02550 0.38 -1.1 548,796 + DZA65_RS02550 0.38 -0.2
Or see this region's nucleotide sequence