Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22645

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,896,353	+				+0.4
4,896,353	+				+0.6
4,896,400	+				+0.3
4,896,400	+				+0.3
4,896,400	+				-0.1
4,896,400	+				-1.6
4,896,401	-				-0.7
4,896,401	-				+0.3
4,896,401	-				+0.3
4,896,401	-				-0.7
4,896,402	+				+1.5
4,896,402	+				+1.9
4,896,402	+				+0.9
4,896,402	+				+1.3
4,896,402	+				+0.3
4,896,403	-				-0.7
4,896,403	-				-0.7
4,896,403	-				-0.7
4,896,403	-				+0.2
4,896,403	-				-0.3
4,896,403	-				+0.8
4,896,428	+				+1.3
4,896,429	-				+2.9
4,896,429	-				-0.8
4,896,431	+				+0.3
4,896,431	+				-0.9
4,896,431	+				+0.9
4,896,431	+				+0.6
4,896,431	+				+2.9
4,896,431	+				-0.3
4,896,432	-				-0.7
4,896,432	-				+2.8
4,896,432	-				+1.6
4,896,432	-				-0.7
4,896,432	-				-1.0
4,896,432	-				-0.5
4,896,432	-				-1.4
4,896,432	-				+0.6
4,896,432	-				-0.9
4,896,456	+				+0.0
4,896,456	+				+0.3
4,896,456	+				-1.5
4,896,456	+				+0.6
4,896,456	+				-1.4
4,896,457	-				+0.8
4,896,457	-				-0.5
4,896,557	+		DZA65_RS22635	0.32	+0.3
4,896,719	+		DZA65_RS22635	0.80	-0.9
4,896,719	+		DZA65_RS22635	0.80	-0.7
4,896,719	+		DZA65_RS22635	0.80	+0.1
4,896,719	+		DZA65_RS22635	0.80	-0.3
4,896,719	+				+0.9
4,896,719	+		DZA65_RS22635	0.80	+0.1
4,896,719	+		DZA65_RS22635	0.80	-0.2
4,896,720	-				+0.9
4,896,720	-		DZA65_RS22635	0.80	+1.9
4,896,720	-		DZA65_RS22635	0.80	-0.1
4,896,720	-		DZA65_RS22635	0.80	+1.1
4,896,763	+				+1.2
4,896,763	+				-0.9
4,896,763	+				+0.3
4,896,764	-				-2.2
4,896,764	-				-0.9
4,896,764	-				-0.8
4,896,764	-				-0.9
4,896,764	-				+0.2
4,896,764	-				+0.3
4,896,764	-				-0.4
4,896,794	+				-0.9
4,896,810	+				+2.6
4,896,810	+				-1.7
4,896,810	+				+0.6
4,896,811	-				-1.8
4,896,895	+		DZA65_RS22640	0.28	+0.1
4,896,895	+		DZA65_RS22640	0.28	-1.3
4,896,895	+		DZA65_RS22640	0.28	-1.3
4,896,896	-		DZA65_RS22640	0.28	+2.9
4,896,896	-		DZA65_RS22640	0.28	-0.0
4,896,896	-		DZA65_RS22640	0.28	+0.3
4,896,956	+		DZA65_RS22640	0.43	-1.1
4,896,956	+		DZA65_RS22640	0.43	-0.6
4,896,956	+		DZA65_RS22640	0.43	-0.4
4,896,982	+		DZA65_RS22640	0.49	-0.1
4,896,983	-		DZA65_RS22640	0.50	-0.7
4,897,017	-		DZA65_RS22640	0.58	+0.3
4,897,037	+		DZA65_RS22640	0.63	-0.7
4,897,037	+		DZA65_RS22640	0.63	-0.8
4,897,037	+		DZA65_RS22640	0.63	-0.4
4,897,037	+		DZA65_RS22640	0.63	-0.4
4,897,038	-		DZA65_RS22640	0.63	+1.3
4,897,038	-		DZA65_RS22640	0.63	-0.7
4,897,038	-		DZA65_RS22640	0.63	+0.1
4,897,038	-		DZA65_RS22640	0.63	-0.9
4,897,123	+		DZA65_RS22640	0.85	-0.8
4,897,134	+		DZA65_RS22640	0.87	-0.5
4,897,134	+		DZA65_RS22640	0.87	-1.0
4,897,134	+		DZA65_RS22640	0.87	+0.3
4,897,134	+		DZA65_RS22640	0.87	+0.0
4,897,282	-				-1.1
4,897,282	-				-0.1
4,897,282	-				-0.9
4,897,289	+				-0.8
4,897,289	+				-0.4
4,897,289	+				-0.4
4,897,289	+				-0.6
4,897,289	+				-1.3
4,897,289	+				-1.2
4,897,289	+				-1.0
4,897,289	+				+0.5
4,897,289	+				+0.3
4,897,289	+				+1.6
4,897,289	+				-1.6
4,897,289	+				-0.7
4,897,289	+				+0.1
4,897,289	+				+0.4
4,897,289	+				-1.5
4,897,289	+				-0.6
4,897,289	+				-0.4
4,897,289	+				-0.0
4,897,289	+				-0.4
4,897,289	+				+0.9
4,897,289	+				+3.6
4,897,289	+				-0.9
4,897,289	+				+0.5
4,897,290	-				-0.9
4,897,290	-				-2.3
4,897,290	-				-0.3
4,897,290	-				-1.5
4,897,290	-				-1.8
4,897,290	-				+2.0
4,897,290	-				+0.2
4,897,290	-				+0.0
4,897,290	-				-0.1
4,897,290	-				-0.7
4,897,290	-				-1.1
4,897,290	-				+4.8
4,897,290	-				+0.7
4,897,290	-				-1.3
4,897,290	-				+0.7
4,897,293	+				-0.7
4,897,339	-		DZA65_RS22645	0.12	+0.3
4,897,357	+		DZA65_RS22645	0.15	-0.1
4,897,358	-		DZA65_RS22645	0.16	+0.3
4,897,358	-		DZA65_RS22645	0.16	-0.9
4,897,386	+		DZA65_RS22645	0.21	+0.5
4,897,387	-		DZA65_RS22645	0.21	-0.3
4,897,495	+		DZA65_RS22645	0.44	-0.2
4,897,496	-		DZA65_RS22645	0.44	-0.6
4,897,496	-		DZA65_RS22645	0.44	-0.4
4,897,496	-				+0.2
4,897,496	-		DZA65_RS22645	0.44	+0.0
4,897,525	+		DZA65_RS22645	0.50	-1.9
4,897,525	+		DZA65_RS22645	0.50	-0.9
4,897,526	-		DZA65_RS22645	0.50	-0.8
4,897,526	-		DZA65_RS22645	0.50	-0.7
4,897,526	-		DZA65_RS22645	0.50	-1.4
4,897,526	-		DZA65_RS22645	0.50	-0.1
4,897,540	+		DZA65_RS22645	0.53	-1.4
4,897,540	+		DZA65_RS22645	0.53	-0.7
4,897,540	+		DZA65_RS22645	0.53	+0.1
4,897,540	+		DZA65_RS22645	0.53	+0.7
4,897,540	+		DZA65_RS22645	0.53	-1.1
4,897,541	-		DZA65_RS22645	0.53	-0.2
4,897,541	-		DZA65_RS22645	0.53	-0.9
4,897,541	-		DZA65_RS22645	0.53	-0.4
4,897,541	-		DZA65_RS22645	0.53	-0.4
4,897,541	-		DZA65_RS22645	0.53	-1.7
4,897,541	-		DZA65_RS22645	0.53	-0.9
4,897,541	-		DZA65_RS22645	0.53	-0.3
4,897,541	-		DZA65_RS22645	0.53	-0.9
4,897,541	-		DZA65_RS22645	0.53	-1.1
4,897,544	+		DZA65_RS22645	0.54	-1.1
4,897,591	+		DZA65_RS22645	0.63	+2.3
4,897,591	+		DZA65_RS22645	0.63	-1.7
4,897,591	+		DZA65_RS22645	0.63	-0.3
4,897,591	+		DZA65_RS22645	0.63	+0.9
4,897,591	+		DZA65_RS22645	0.63	-0.6
4,897,591	+		DZA65_RS22645	0.63	-0.2
4,897,591	+		DZA65_RS22645	0.63	-1.3
4,897,591	+		DZA65_RS22645	0.63	-0.1
4,897,591	+		DZA65_RS22645	0.63	-0.4
4,897,591	+		DZA65_RS22645	0.63	+1.9
4,897,591	+		DZA65_RS22645	0.63	-1.3
4,897,591	+		DZA65_RS22645	0.63	+1.2
4,897,591	+		DZA65_RS22645	0.63	+0.1
4,897,591	+		DZA65_RS22645	0.63	-2.3
4,897,591	+		DZA65_RS22645	0.63	-0.3
4,897,592	-		DZA65_RS22645	0.63	+0.1
4,897,592	-		DZA65_RS22645	0.63	-0.1
4,897,592	-		DZA65_RS22645	0.63	-0.7
4,897,592	-		DZA65_RS22645	0.63	+3.0
4,897,592	-		DZA65_RS22645	0.63	-1.9
4,897,592	-		DZA65_RS22645	0.63	-0.9
4,897,592	-		DZA65_RS22645	0.63	+0.3
4,897,592	-		DZA65_RS22645	0.63	-0.1
4,897,592	-		DZA65_RS22645	0.63	-1.6
4,897,592	-		DZA65_RS22645	0.63	-0.9
4,897,592	-		DZA65_RS22645	0.63	-0.6
4,897,593	+		DZA65_RS22645	0.64	-1.6
4,897,593	+		DZA65_RS22645	0.64	-0.1
4,897,593	+		DZA65_RS22645	0.64	-0.9
4,897,593	+		DZA65_RS22645	0.64	-0.4
4,897,594	-		DZA65_RS22645	0.64	-1.9
4,897,594	-		DZA65_RS22645	0.64	-0.8
4,897,594	-		DZA65_RS22645	0.64	+0.2
4,897,594	-		DZA65_RS22645	0.64	-0.1
4,897,594	-		DZA65_RS22645	0.64	-0.4
4,897,675	+		DZA65_RS22645	0.80	-0.2
4,897,680	+		DZA65_RS22645	0.81	-2.2
4,897,768	+				+0.8
4,897,768	+				+0.3
4,897,769	-				-1.0
4,897,775	+				-2.0
4,897,776	-				-2.5
4,897,776	-				-0.8
4,897,827	+				+1.7
4,897,827	+				+3.5
4,897,827	+				+0.3
4,897,828	-				-0.9
4,897,828	-				-1.4
4,897,828	-				-0.1
4,897,828	-				-0.7
4,897,828	-				+0.9
4,897,828	-				-1.2
4,897,828	-				-1.9
4,897,939	+		DZA65_RS22650	0.15	-0.4
4,897,939	+		DZA65_RS22650	0.15	-0.1
4,897,939	+		DZA65_RS22650	0.15	+1.5
4,897,994	-		DZA65_RS22650	0.20	-0.0
4,898,045	+		DZA65_RS22650	0.25	-1.1
4,898,048	+		DZA65_RS22650	0.25	-0.9
4,898,048	+		DZA65_RS22650	0.25	-1.5
4,898,048	+		DZA65_RS22650	0.25	+0.1
4,898,048	+		DZA65_RS22650	0.25	+0.3
4,898,048	+		DZA65_RS22650	0.25	-0.1
4,898,049	-		DZA65_RS22650	0.25	+1.5
4,898,049	-		DZA65_RS22650	0.25	+0.3
4,898,049	-		DZA65_RS22650	0.25	-0.9
4,898,049	-		DZA65_RS22650	0.25	+0.8
4,898,092	+		DZA65_RS22650	0.29	+1.2
4,898,092	+		DZA65_RS22650	0.29	-1.7
4,898,092	+		DZA65_RS22650	0.29	-0.3
4,898,093	-		DZA65_RS22650	0.29	+0.9
4,898,093	-		DZA65_RS22650	0.29	-0.7
4,898,115	+		DZA65_RS22650	0.31	+1.9
4,898,115	+		DZA65_RS22650	0.31	+1.1
4,898,115	+		DZA65_RS22650	0.31	-0.4
4,898,116	-		DZA65_RS22650	0.31	+0.0
4,898,229	+		DZA65_RS22650	0.42	-0.4
4,898,268	+		DZA65_RS22650	0.45	-0.6
4,898,268	+		DZA65_RS22650	0.45	-0.3
4,898,268	+		DZA65_RS22650	0.45	+3.5
4,898,269	-		DZA65_RS22650	0.46	-1.4
4,898,325	-		DZA65_RS22650	0.51	+0.3
4,898,325	-		DZA65_RS22650	0.51	-0.7
4,898,325	-		DZA65_RS22650	0.51	+0.9
4,898,325	-		DZA65_RS22650	0.51	+0.3
4,898,364	+		DZA65_RS22650	0.54	-2.3
4,898,427	+		DZA65_RS22650	0.60	-0.7
4,898,469	-		DZA65_RS22650	0.64	+4.6
4,898,540	-		DZA65_RS22650	0.71	-1.7
4,898,551	+		DZA65_RS22650	0.72	-0.3
4,898,585	+		DZA65_RS22650	0.75	-0.4
4,898,585	+		DZA65_RS22650	0.75	+0.9
4,898,609	+		DZA65_RS22650	0.77	-0.4
4,898,609	+		DZA65_RS22650	0.77	-0.5
4,898,609	+		DZA65_RS22650	0.77	-0.4
4,898,610	-		DZA65_RS22650	0.77	-0.0
4,898,610	-		DZA65_RS22650	0.77	-0.4
4,898,648	-		DZA65_RS22650	0.80	-0.1
4,898,648	-		DZA65_RS22650	0.80	+0.3
4,898,676	+		DZA65_RS22650	0.83	+0.9
4,898,676	+		DZA65_RS22650	0.83	+0.3
4,898,677	-		DZA65_RS22650	0.83	+0.3
4,898,677	-		DZA65_RS22650	0.83	-0.4
4,898,677	-		DZA65_RS22650	0.83	+0.9
4,898,680	-		DZA65_RS22650	0.83	-2.2
4,898,722	-		DZA65_RS22650	0.87	-2.0