Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21090 and DZA65_RS21095 overlap by 4 nucleotides DZA65_RS21095 and DZA65_RS21100 overlap by 4 nucleotides DZA65_RS21100 and DZA65_RS21105 are separated by 88 nucleotides DZA65_RS21105 and DZA65_RS21110 are separated by 59 nucleotides DZA65_RS21110 and DZA65_RS21115 are separated by 94 nucleotides
DZA65_RS21090: DZA65_RS21090 - tyrosine recombinase XerC, at 4,559,949 to 4,560,857
_RS21090
DZA65_RS21095: DZA65_RS21095 - DUF484 domain-containing protein, at 4,560,854 to 4,561,555
_RS21095
DZA65_RS21100: DZA65_RS21100 - diaminopimelate epimerase, at 4,561,552 to 4,562,376
_RS21100
DZA65_RS21105: DZA65_RS21105 - hypothetical protein, at 4,562,465 to 4,562,647
_RS21105
DZA65_RS21110: DZA65_RS21110 - iron donor protein CyaY, at 4,562,707 to 4,563,027
_RS21110
DZA65_RS21115: DZA65_RS21115 - class I adenylate cyclase, at 4,563,122 to 4,565,680
_RS21115
Position (kb)
4561
4562
4563 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4560.763 kb on + strand, within DZA65_RS21090 at 4560.857 kb on + strand at 4560.858 kb on - strand at 4561.077 kb on + strand, within DZA65_RS21095 at 4561.077 kb on + strand, within DZA65_RS21095 at 4561.077 kb on + strand, within DZA65_RS21095 at 4561.078 kb on - strand, within DZA65_RS21095 at 4561.078 kb on - strand, within DZA65_RS21095 at 4561.078 kb on - strand, within DZA65_RS21095 at 4561.078 kb on - strand, within DZA65_RS21095 at 4561.078 kb on - strand, within DZA65_RS21095 at 4561.127 kb on - strand, within DZA65_RS21095 at 4561.147 kb on + strand, within DZA65_RS21095 at 4561.148 kb on - strand, within DZA65_RS21095 at 4561.270 kb on + strand, within DZA65_RS21095 at 4561.295 kb on + strand, within DZA65_RS21095 at 4561.295 kb on + strand, within DZA65_RS21095 at 4561.295 kb on + strand, within DZA65_RS21095 at 4561.296 kb on - strand, within DZA65_RS21095 at 4561.296 kb on - strand, within DZA65_RS21095 at 4561.296 kb on - strand, within DZA65_RS21095 at 4561.346 kb on + strand, within DZA65_RS21095 at 4561.347 kb on - strand, within DZA65_RS21095 at 4561.347 kb on - strand, within DZA65_RS21095 at 4561.347 kb on - strand, within DZA65_RS21095 at 4561.363 kb on - strand, within DZA65_RS21095 at 4561.435 kb on + strand, within DZA65_RS21095 at 4561.436 kb on - strand, within DZA65_RS21095 at 4561.436 kb on - strand, within DZA65_RS21095 at 4561.495 kb on - strand at 4561.555 kb on + strand at 4561.555 kb on + strand at 4561.555 kb on + strand at 4561.556 kb on - strand at 4561.556 kb on - strand at 4561.556 kb on - strand at 4561.556 kb on - strand at 4561.556 kb on - strand at 4561.564 kb on - strand at 4561.564 kb on - strand at 4561.564 kb on - strand at 4561.564 kb on - strand at 4561.564 kb on - strand at 4562.436 kb on - strand at 4562.436 kb on - strand at 4562.455 kb on - strand at 4562.501 kb on - strand, within DZA65_RS21105 at 4562.636 kb on - strand at 4562.653 kb on + strand at 4562.654 kb on - strand at 4562.654 kb on - strand at 4562.654 kb on - strand at 4562.654 kb on - strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.657 kb on + strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.658 kb on - strand at 4562.666 kb on + strand at 4562.667 kb on - strand at 4562.667 kb on - strand at 4562.667 kb on - strand at 4562.667 kb on - strand at 4562.667 kb on - strand at 4562.667 kb on - strand at 4562.695 kb on + strand at 4562.696 kb on - strand at 4562.696 kb on - strand at 4562.706 kb on + strand at 4562.706 kb on + strand at 4562.750 kb on + strand, within DZA65_RS21110 at 4562.750 kb on + strand, within DZA65_RS21110 at 4562.800 kb on + strand, within DZA65_RS21110 at 4562.911 kb on + strand, within DZA65_RS21110 at 4562.923 kb on + strand, within DZA65_RS21110 at 4562.923 kb on + strand, within DZA65_RS21110 at 4562.923 kb on + strand, within DZA65_RS21110 at 4562.924 kb on - strand, within DZA65_RS21110 at 4562.924 kb on - strand, within DZA65_RS21110 at 4562.924 kb on - strand, within DZA65_RS21110 at 4562.932 kb on - strand, within DZA65_RS21110 at 4563.016 kb on + strand at 4563.017 kb on - strand at 4563.017 kb on - strand at 4563.062 kb on + strand at 4563.062 kb on + strand at 4563.062 kb on + strand at 4563.062 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.188 kb on + strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.189 kb on - strand at 4563.256 kb on - strand at 4563.294 kb on + strand at 4563.294 kb on + strand at 4563.295 kb on - strand at 4563.299 kb on - strand at 4563.375 kb on + strand at 4563.375 kb on + strand at 4563.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 4,560,763 + DZA65_RS21090 0.90 -0.5 4,560,857 + -0.6 4,560,858 - +0.3 4,561,077 + DZA65_RS21095 0.32 -1.0 4,561,077 + DZA65_RS21095 0.32 -1.0 4,561,077 + DZA65_RS21095 0.32 -0.3 4,561,078 - DZA65_RS21095 0.32 +0.8 4,561,078 - DZA65_RS21095 0.32 +0.3 4,561,078 - DZA65_RS21095 0.32 -0.2 4,561,078 - DZA65_RS21095 0.32 +0.3 4,561,078 - DZA65_RS21095 0.32 +1.8 4,561,127 - DZA65_RS21095 0.39 -0.5 4,561,147 + DZA65_RS21095 0.42 +0.5 4,561,148 - DZA65_RS21095 0.42 -1.6 4,561,270 + DZA65_RS21095 0.59 +0.3 4,561,295 + DZA65_RS21095 0.63 -1.0 4,561,295 + DZA65_RS21095 0.63 +0.1 4,561,295 + DZA65_RS21095 0.63 -1.2 4,561,296 - DZA65_RS21095 0.63 -1.3 4,561,296 - DZA65_RS21095 0.63 +0.3 4,561,296 - DZA65_RS21095 0.63 +1.3 4,561,346 + DZA65_RS21095 0.70 -1.6 4,561,347 - DZA65_RS21095 0.70 +0.0 4,561,347 - DZA65_RS21095 0.70 -1.0 4,561,347 - DZA65_RS21095 0.70 +0.8 4,561,363 - DZA65_RS21095 0.73 -0.8 4,561,435 + DZA65_RS21095 0.83 -1.1 4,561,436 - DZA65_RS21095 0.83 -0.7 4,561,436 - DZA65_RS21095 0.83 -1.0 4,561,495 - -1.1 4,561,555 + -0.2 4,561,555 + -1.6 4,561,555 + -1.1 4,561,556 - -1.6 4,561,556 - +1.1 4,561,556 - -0.5 4,561,556 - -2.1 4,561,556 - -1.7 4,561,564 - +1.8 4,561,564 - +0.0 4,561,564 - -0.2 4,561,564 - -1.0 4,561,564 - +1.3 4,562,436 - +0.4 4,562,436 - +0.3 4,562,455 - +0.3 4,562,501 - DZA65_RS21105 0.20 +1.1 4,562,636 - -2.0 4,562,653 + -0.2 4,562,654 - -0.2 4,562,654 - -0.2 4,562,654 - +0.3 4,562,654 - +0.1 4,562,657 + -3.1 4,562,657 + -1.6 4,562,657 + -1.9 4,562,657 + -2.3 4,562,657 + -0.2 4,562,657 + -0.4 4,562,657 + -1.6 4,562,657 + -0.6 4,562,657 + -1.2 4,562,657 + -1.2 4,562,658 - -1.0 4,562,658 - +0.5 4,562,658 - -0.3 4,562,658 - -0.5 4,562,658 - -0.6 4,562,658 - -0.7 4,562,658 - -1.2 4,562,658 - +1.8 4,562,658 - -1.0 4,562,658 - -0.9 4,562,658 - -1.3 4,562,658 - +1.3 4,562,658 - -0.2 4,562,658 - -0.5 4,562,658 - -0.7 4,562,658 - +0.6 4,562,658 - -0.5 4,562,658 - -1.3 4,562,658 - -0.5 4,562,658 - -1.7 4,562,658 - -0.5 4,562,658 - +0.5 4,562,658 - +1.8 4,562,658 - +0.3 4,562,658 - +1.8 4,562,658 - -1.2 4,562,658 - -0.3 4,562,658 - -2.0 4,562,658 - +0.3 4,562,658 - +0.4 4,562,658 - -1.1 4,562,658 - +0.8 4,562,666 + -2.4 4,562,667 - +2.8 4,562,667 - -0.1 4,562,667 - +0.8 4,562,667 - +0.8 4,562,667 - -0.7 4,562,667 - +1.4 4,562,695 + +0.7 4,562,696 - +0.8 4,562,696 - +0.5 4,562,706 + -0.7 4,562,706 + +1.4 4,562,750 + DZA65_RS21110 0.13 +1.2 4,562,750 + DZA65_RS21110 0.13 +0.8 4,562,800 + DZA65_RS21110 0.29 -1.6 4,562,911 + DZA65_RS21110 0.64 -0.4 4,562,923 + DZA65_RS21110 0.67 -1.5 4,562,923 + DZA65_RS21110 0.67 -0.5 4,562,923 + DZA65_RS21110 0.67 -1.0 4,562,924 - DZA65_RS21110 0.68 -0.5 4,562,924 - DZA65_RS21110 0.68 -1.7 4,562,924 - DZA65_RS21110 0.68 -0.9 4,562,932 - DZA65_RS21110 0.70 +0.8 4,563,016 + +2.3 4,563,017 - -0.2 4,563,017 - -0.6 4,563,062 + -1.2 4,563,062 + +0.5 4,563,062 + -1.0 4,563,062 + +1.8 4,563,188 + -0.7 4,563,188 + +0.5 4,563,188 + -0.2 4,563,188 + -1.0 4,563,188 + +0.3 4,563,188 + +0.1 4,563,188 + -0.7 4,563,189 - +1.8 4,563,189 - +0.1 4,563,189 - +0.3 4,563,189 - -0.3 4,563,189 - -0.2 4,563,189 - +0.0 4,563,189 - +1.0 4,563,189 - -0.2 4,563,189 - -0.7 4,563,189 - -1.6 4,563,256 - -0.5 4,563,294 + -2.2 4,563,294 + -0.3 4,563,295 - +0.2 4,563,299 - +0.8 4,563,375 + +0.3 4,563,375 + -1.0 4,563,376 - -2.1
Or see this region's nucleotide sequence