Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20965

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,531,646	+		DZA65_RS20960	0.52	+1.1
4,531,648	+		DZA65_RS20960	0.52	+1.5
4,531,648	+		DZA65_RS20960	0.52	-2.2
4,531,648	+		DZA65_RS20960	0.52	+1.8
4,531,648	+		DZA65_RS20960	0.52	-0.3
4,531,648	+		DZA65_RS20960	0.52	-1.2
4,531,648	+		DZA65_RS20960	0.52	+0.3
4,531,648	+		DZA65_RS20960	0.52	-1.1
4,531,649	-		DZA65_RS20960	0.53	-0.7
4,531,649	-		DZA65_RS20960	0.53	-0.1
4,531,649	-		DZA65_RS20960	0.53	-1.3
4,531,649	-		DZA65_RS20960	0.53	-0.4
4,531,649	-		DZA65_RS20960	0.53	-1.0
4,531,649	-		DZA65_RS20960	0.53	-3.0
4,531,649	-		DZA65_RS20960	0.53	+0.3
4,531,649	-		DZA65_RS20960	0.53	+0.3
4,531,649	-		DZA65_RS20960	0.53	+3.4
4,531,716	+		DZA65_RS20960	0.58	+0.3
4,531,716	+		DZA65_RS20960	0.58	+0.3
4,531,716	+		DZA65_RS20960	0.58	-0.5
4,531,717	-		DZA65_RS20960	0.58	-1.2
4,531,739	+		DZA65_RS20960	0.59	-0.2
4,531,740	-		DZA65_RS20960	0.59	-0.2
4,531,744	+		DZA65_RS20960	0.60	-0.2
4,531,744	+		DZA65_RS20960	0.60	-2.6
4,531,744	+		DZA65_RS20960	0.60	-0.5
4,531,744	+		DZA65_RS20960	0.60	-0.2
4,531,745	-		DZA65_RS20960	0.60	-2.2
4,531,861	+		DZA65_RS20960	0.69	-1.6
4,531,861	+		DZA65_RS20960	0.69	+0.3
4,531,862	-		DZA65_RS20960	0.69	+0.3
4,531,862	-		DZA65_RS20960	0.69	-0.4
4,531,862	-		DZA65_RS20960	0.69	+0.3
4,531,933	+		DZA65_RS20960	0.74	+2.3
4,531,933	+		DZA65_RS20960	0.74	-0.8
4,531,933	+		DZA65_RS20960	0.74	+0.5
4,531,933	+		DZA65_RS20960	0.74	+2.1
4,531,933	+		DZA65_RS20960	0.74	-0.2
4,531,933	+		DZA65_RS20960	0.74	+0.1
4,531,933	+		DZA65_RS20960	0.74	-1.0
4,531,934	-		DZA65_RS20960	0.74	-0.8
4,531,934	-		DZA65_RS20960	0.74	+0.8
4,531,934	-		DZA65_RS20960	0.74	+1.3
4,531,934	-		DZA65_RS20960	0.74	+0.7
4,531,934	-		DZA65_RS20960	0.74	-1.3
4,531,934	-		DZA65_RS20960	0.74	-1.0
4,531,934	-		DZA65_RS20960	0.74	-1.2
4,531,934	-		DZA65_RS20960	0.74	-1.0
4,531,934	-		DZA65_RS20960	0.74	+1.1
4,531,934	-		DZA65_RS20960	0.74	-1.2
4,531,934	-		DZA65_RS20960	0.74	+0.3
4,531,934	-		DZA65_RS20960	0.74	-0.2
4,531,985	+		DZA65_RS20960	0.78	-0.5
4,531,985	+		DZA65_RS20960	0.78	-0.3
4,531,985	+		DZA65_RS20960	0.78	-0.2
4,531,985	+		DZA65_RS20960	0.78	+1.3
4,531,985	+		DZA65_RS20960	0.78	-0.7
4,531,986	-		DZA65_RS20960	0.78	-2.9
4,531,986	-		DZA65_RS20960	0.78	+0.5
4,531,986	-		DZA65_RS20960	0.78	+0.1
4,532,025	-		DZA65_RS20960	0.81	+0.5
4,532,198	+				+0.5
4,532,199	-				+0.6
4,532,199	-				-0.2
4,532,214	-				-1.5
4,532,274	-				+1.2
4,532,373	+				-1.2
4,532,373	+				-0.7
4,532,374	-				-0.2
4,532,378	+				-0.2
4,532,378	+				-0.7
4,532,378	+				-0.3
4,532,378	+				+0.5
4,532,378	+				-0.7
4,532,379	-				-1.2
4,532,379	-				-1.6
4,532,379	-				-0.2
4,532,379	-				+0.8
4,532,379	-				-0.7
4,532,379	-				-0.9
4,532,379	-				-0.8
4,532,415	+				-0.5
4,532,415	+				-0.2
4,532,415	+				-1.0
4,532,415	+				-1.3
4,532,415	+				-0.0
4,532,415	+				+1.4
4,532,415	+				-0.7
4,532,415	+				+1.8
4,532,415	+				-0.3
4,532,416	-				+4.1
4,532,416	-				-1.5
4,532,416	-				+0.3
4,532,417	+				-0.0
4,532,417	+				-1.3
4,532,417	+				+0.6
4,532,417	+				-1.5
4,532,417	+				-1.9
4,532,417	+				-0.2
4,532,418	-				-0.1
4,532,418	-				+0.8
4,532,418	-				-0.7
4,532,418	-				+0.3
4,532,418	-				+6.6
4,532,418	-				+0.4
4,532,493	-				-2.4
4,532,497	+				-0.0
4,532,510	-				+1.4
4,532,521	+				+0.6
4,532,536	+				-2.3
4,532,536	+				-0.2
4,532,536	+				-0.3
4,532,536	+				+1.3
4,532,536	+				+0.3
4,532,536	+				+0.3
4,532,536	+				-0.5
4,532,537	-				-1.3
4,532,539	+				-1.6
4,532,539	+				+0.1
4,532,726	+		DZA65_RS20965	0.39	-1.2
4,532,726	+		DZA65_RS20965	0.39	+3.8
4,532,740	+		DZA65_RS20965	0.42	-2.2
4,532,741	-		DZA65_RS20965	0.42	+0.3
4,532,759	-		DZA65_RS20965	0.46	-1.2
4,532,890	+		DZA65_RS20965	0.71	-2.1
4,532,891	-		DZA65_RS20965	0.71	-0.5
4,532,891	-		DZA65_RS20965	0.71	-1.5
4,532,891	-		DZA65_RS20965	0.71	-0.2
4,533,053	-				-0.8
4,533,072	+				-0.2
4,533,072	+				-2.3
4,533,072	+				-0.2
4,533,073	-				-1.3
4,533,073	-				+0.6
4,533,165	-		DZA65_RS20970	0.11	-0.3
4,533,377	+		DZA65_RS20970	0.33	-0.5
4,533,379	+		DZA65_RS20970	0.33	-0.6
4,533,380	-		DZA65_RS20970	0.33	-0.2
4,533,409	+		DZA65_RS20970	0.36	-1.0
4,533,459	+		DZA65_RS20970	0.41	-0.5
4,533,460	-		DZA65_RS20970	0.41	+1.4
4,533,463	-		DZA65_RS20970	0.41	+0.2
4,533,467	+		DZA65_RS20970	0.42	+0.7
4,533,467	+		DZA65_RS20970	0.42	-2.0
4,533,468	-		DZA65_RS20970	0.42	-1.4
4,533,468	-		DZA65_RS20970	0.42	+0.3
4,533,468	-		DZA65_RS20970	0.42	+0.3
4,533,468	-		DZA65_RS20970	0.42	-1.0
4,533,468	-		DZA65_RS20970	0.42	+0.3
4,533,524	+		DZA65_RS20970	0.47	+1.8
4,533,524	+		DZA65_RS20970	0.47	+0.6
4,533,524	+		DZA65_RS20970	0.47	-0.1
4,533,524	+		DZA65_RS20970	0.47	+2.8
4,533,524	+		DZA65_RS20970	0.47	-0.7
4,533,524	+		DZA65_RS20970	0.47	-1.3
4,533,524	+		DZA65_RS20970	0.47	-1.3
4,533,524	+		DZA65_RS20970	0.47	+1.4
4,533,524	+		DZA65_RS20970	0.47	-0.3
4,533,524	+		DZA65_RS20970	0.47	-0.3
4,533,525	-		DZA65_RS20970	0.47	-2.2
4,533,525	-		DZA65_RS20970	0.47	+1.4
4,533,526	+		DZA65_RS20970	0.48	-0.9
4,533,526	+		DZA65_RS20970	0.48	+1.0
4,533,526	+		DZA65_RS20970	0.48	+0.8
4,533,526	+		DZA65_RS20970	0.48	-0.2
4,533,527	-		DZA65_RS20970	0.48	-0.2
4,533,527	-		DZA65_RS20970	0.48	-1.6
4,533,527	-		DZA65_RS20970	0.48	-0.7
4,533,527	-		DZA65_RS20970	0.48	-2.1
4,533,527	-		DZA65_RS20970	0.48	-0.3
4,533,603	+		DZA65_RS20970	0.55	-1.7
4,533,603	+		DZA65_RS20970	0.55	-0.6
4,533,603	+		DZA65_RS20970	0.55	+1.8
4,533,603	+		DZA65_RS20970	0.55	-0.2
4,533,604	-		DZA65_RS20970	0.55	-2.7
4,533,648	-		DZA65_RS20970	0.60	-1.2
4,533,694	+		DZA65_RS20970	0.64	-0.5
4,533,694	+		DZA65_RS20970	0.64	-0.5
4,533,745	+		DZA65_RS20970	0.69	-1.0
4,533,746	-		DZA65_RS20970	0.70	-1.5
4,533,746	-		DZA65_RS20970	0.70	-0.7
4,533,746	-		DZA65_RS20970	0.70	-0.6
4,533,746	-		DZA65_RS20970	0.70	+0.3
4,533,767	-		DZA65_RS20970	0.72	-1.6
4,533,901	+		DZA65_RS20970	0.85	-1.6
4,533,974	-				-0.9