Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20775

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,481,811	+		DZA65_RS20770	0.31	-2.6
4,482,065	+		DZA65_RS20770	0.50	+0.8
4,482,066	-		DZA65_RS20770	0.51	-0.9
4,482,080	+		DZA65_RS20770	0.52	-0.8
4,482,108	-		DZA65_RS20770	0.54	-0.0
4,482,123	+		DZA65_RS20770	0.55	-0.2
4,482,123	+		DZA65_RS20770	0.55	-1.3
4,482,123	+		DZA65_RS20770	0.55	+0.3
4,482,124	-		DZA65_RS20770	0.55	-1.2
4,482,124	-		DZA65_RS20770	0.55	-1.7
4,482,124	-		DZA65_RS20770	0.55	-1.4
4,482,124	-		DZA65_RS20770	0.55	+0.8
4,482,124	-		DZA65_RS20770	0.55	+0.2
4,482,124	-		DZA65_RS20770	0.55	+1.8
4,482,206	+		DZA65_RS20770	0.61	+0.5
4,482,207	-		DZA65_RS20770	0.61	-0.8
4,482,207	-		DZA65_RS20770	0.61	-1.2
4,482,207	-		DZA65_RS20770	0.61	+0.6
4,482,207	-		DZA65_RS20770	0.61	-2.4
4,482,207	-		DZA65_RS20770	0.61	-0.2
4,482,249	+		DZA65_RS20770	0.65	+0.8
4,482,249	+		DZA65_RS20770	0.65	-0.0
4,482,250	-		DZA65_RS20770	0.65	-1.8
4,482,250	-		DZA65_RS20770	0.65	-0.8
4,482,279	+		DZA65_RS20770	0.67	+0.5
4,482,282	+		DZA65_RS20770	0.67	-1.5
4,482,282	+		DZA65_RS20770	0.67	-1.1
4,482,282	+		DZA65_RS20770	0.67	-0.2
4,482,282	+		DZA65_RS20770	0.67	+1.2
4,482,283	-		DZA65_RS20770	0.67	+0.5
4,482,283	-		DZA65_RS20770	0.67	+0.1
4,482,283	-		DZA65_RS20770	0.67	-0.7
4,482,283	-		DZA65_RS20770	0.67	-1.7
4,482,283	-		DZA65_RS20770	0.67	-0.4
4,482,283	-		DZA65_RS20770	0.67	+0.8
4,482,283	-		DZA65_RS20770	0.67	-1.5
4,482,301	+		DZA65_RS20770	0.69	-1.0
4,482,301	+		DZA65_RS20770	0.69	-0.1
4,482,389	+		DZA65_RS20770	0.75	+1.6
4,482,389	+		DZA65_RS20770	0.75	+0.4
4,482,389	+		DZA65_RS20770	0.75	-0.8
4,482,390	-		DZA65_RS20770	0.75	-2.6
4,482,390	-		DZA65_RS20770	0.75	-0.5
4,482,390	-		DZA65_RS20770	0.75	+1.5
4,482,390	-		DZA65_RS20770	0.75	-0.5
4,482,390	-		DZA65_RS20770	0.75	-0.7
4,482,391	+		DZA65_RS20770	0.75	-0.2
4,482,391	+		DZA65_RS20770	0.75	+1.5
4,482,391	+		DZA65_RS20770	0.75	+1.2
4,482,391	+		DZA65_RS20770	0.75	-0.7
4,482,391	+		DZA65_RS20770	0.75	-0.7
4,482,391	+		DZA65_RS20770	0.75	+4.4
4,482,391	+		DZA65_RS20770	0.75	-0.2
4,482,391	+		DZA65_RS20770	0.75	+0.4
4,482,391	+		DZA65_RS20770	0.75	+1.1
4,482,392	-		DZA65_RS20770	0.76	-1.0
4,482,392	-		DZA65_RS20770	0.76	-1.2
4,482,392	-		DZA65_RS20770	0.76	-0.8
4,482,392	-		DZA65_RS20770	0.76	-2.3
4,482,392	-		DZA65_RS20770	0.76	-1.0
4,482,392	-		DZA65_RS20770	0.76	+0.4
4,482,392	-		DZA65_RS20770	0.76	-0.5
4,482,392	-		DZA65_RS20770	0.76	+2.2
4,482,392	-		DZA65_RS20770	0.76	-1.5
4,482,392	-		DZA65_RS20770	0.76	-0.5
4,482,458	+		DZA65_RS20770	0.81	-0.7
4,482,458	+		DZA65_RS20770	0.81	-1.1
4,482,458	+		DZA65_RS20770	0.81	+0.1
4,482,458	+		DZA65_RS20770	0.81	-1.9
4,482,458	+		DZA65_RS20770	0.81	+0.8
4,482,458	+		DZA65_RS20770	0.81	-1.3
4,482,458	+		DZA65_RS20770	0.81	+0.3
4,482,458	+		DZA65_RS20770	0.81	-0.5
4,482,459	-		DZA65_RS20770	0.81	-0.5
4,482,459	-		DZA65_RS20770	0.81	+1.8
4,482,461	+		DZA65_RS20770	0.81	-0.4
4,482,461	+		DZA65_RS20770	0.81	-0.5
4,482,462	-		DZA65_RS20770	0.81	+0.4
4,482,539	+		DZA65_RS20770	0.87	-1.2
4,482,539	+		DZA65_RS20770	0.87	-0.8
4,482,540	-		DZA65_RS20770	0.87	-0.3
4,482,540	-		DZA65_RS20770	0.87	+0.7
4,482,716	-				-1.4
4,482,716	-				+0.4
4,482,722	+				+0.4
4,482,811	+				+0.2
4,482,812	-		DZA65_RS20775	0.24	+0.5
4,482,836	-		DZA65_RS20775	0.30	+0.5
4,482,859	+		DZA65_RS20775	0.37	-1.2
4,483,161	+		DZA65_RS20780	0.14	+0.5
4,483,161	+		DZA65_RS20780	0.14	-1.0
4,483,161	+		DZA65_RS20780	0.14	+0.6
4,483,161	+		DZA65_RS20780	0.14	+0.2
4,483,161	+		DZA65_RS20780	0.14	+0.4
4,483,161	+		DZA65_RS20780	0.14	-1.4
4,483,161	+		DZA65_RS20780	0.14	-0.1
4,483,161	+		DZA65_RS20780	0.14	+1.3
4,483,161	+		DZA65_RS20780	0.14	+1.2
4,483,161	+		DZA65_RS20780	0.14	-0.4
4,483,162	-		DZA65_RS20780	0.14	-0.3
4,483,162	-		DZA65_RS20780	0.14	-0.5
4,483,162	-				+0.8
4,483,162	-		DZA65_RS20780	0.14	+0.6
4,483,226	+		DZA65_RS20780	0.26	-1.1
4,483,227	-		DZA65_RS20780	0.26	-0.9
4,483,237	-		DZA65_RS20780	0.28	+0.2
4,483,309	+		DZA65_RS20780	0.41	-0.8
4,483,309	+		DZA65_RS20780	0.41	-1.2
4,483,309	+		DZA65_RS20780	0.41	+0.5
4,483,309	+		DZA65_RS20780	0.41	-1.8
4,483,310	-		DZA65_RS20780	0.41	-1.0
4,483,310	-		DZA65_RS20780	0.41	-1.5
4,483,310	-		DZA65_RS20780	0.41	+0.8
4,483,536	+		DZA65_RS20780	0.82	+0.2
4,483,573	+		DZA65_RS20780	0.89	-0.9
4,483,574	-		DZA65_RS20780	0.89	-0.8
4,483,574	-		DZA65_RS20780	0.89	-0.5
4,483,585	+				+0.6
4,483,612	+				-1.0
4,483,619	+				-0.7
4,483,670	-				-1.6
4,483,670	-				-0.7
4,483,697	+		DZA65_RS20785	0.12	-0.8
4,483,697	+		DZA65_RS20785	0.12	-0.8
4,483,697	+		DZA65_RS20785	0.12	+0.4
4,483,698	-		DZA65_RS20785	0.12	-0.2
4,483,698	-		DZA65_RS20785	0.12	-0.6
4,483,728	+		DZA65_RS20785	0.17	+0.6
4,483,728	+		DZA65_RS20785	0.17	+0.2
4,483,728	+		DZA65_RS20785	0.17	-0.3
4,483,728	+		DZA65_RS20785	0.17	+2.5
4,483,728	+		DZA65_RS20785	0.17	-0.3
4,483,729	-		DZA65_RS20785	0.17	+1.8
4,483,729	-		DZA65_RS20785	0.17	+0.5
4,483,729	-		DZA65_RS20785	0.17	-0.9
4,483,729	-		DZA65_RS20785	0.17	-1.1
4,483,729	-		DZA65_RS20785	0.17	-1.5
4,483,729	-		DZA65_RS20785	0.17	-1.0
4,483,729	-		DZA65_RS20785	0.17	-0.4
4,483,743	+		DZA65_RS20785	0.20	-1.0
4,483,743	+		DZA65_RS20785	0.20	+3.8
4,483,743	+		DZA65_RS20785	0.20	-0.5
4,483,743	+		DZA65_RS20785	0.20	+0.0
4,483,743	+		DZA65_RS20785	0.20	-0.5
4,483,744	-		DZA65_RS20785	0.20	+0.4
4,483,744	-		DZA65_RS20785	0.20	-1.0
4,483,744	-		DZA65_RS20785	0.20	+1.2
4,483,744	-		DZA65_RS20785	0.20	+1.5
4,483,744	-		DZA65_RS20785	0.20	+1.0
4,483,792	+		DZA65_RS20785	0.29	-0.1
4,484,002	+		DZA65_RS20785	0.66	+0.8