Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20640 and DZA65_RS20645 are separated by 17 nucleotides DZA65_RS20645 and DZA65_RS20650 are separated by 326 nucleotides DZA65_RS20650 and DZA65_RS20655 are separated by 88 nucleotides
DZA65_RS20640: DZA65_RS20640 - phosphoribulokinase, at 4,452,240 to 4,453,109
_RS20640
DZA65_RS20645: DZA65_RS20645 - OsmC family protein, at 4,453,127 to 4,453,534
_RS20645
DZA65_RS20650: DZA65_RS20650 - cAMP-activated global transcriptional regulator CRP, at 4,453,861 to 4,454,493
_RS20650
DZA65_RS20655: DZA65_RS20655 - aspartate aminotransferase family protein, at 4,454,582 to 4,455,805
_RS20655
Position (kb) 4453
4454
4455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.088 kb on - strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.107 kb on + strand at 4453.160 kb on - strand at 4453.200 kb on + strand, within DZA65_RS20645 at 4453.201 kb on - strand, within DZA65_RS20645 at 4453.267 kb on + strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.534 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.581 kb on + strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.584 kb on - strand at 4453.584 kb on - strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.639 kb on + strand at 4453.639 kb on + strand at 4453.640 kb on - strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.741 kb on + strand at 4453.743 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.791 kb on + strand at 4453.791 kb on + strand at 4453.801 kb on + strand at 4453.801 kb on + strand at 4453.839 kb on + strand at 4454.495 kb on + strand at 4454.495 kb on + strand at 4454.561 kb on - strand at 4454.584 kb on - strand at 4454.584 kb on - strand at 4454.653 kb on + strand at 4454.653 kb on + strand at 4454.654 kb on - strand at 4454.816 kb on - strand, within DZA65_RS20655 at 4454.816 kb on - strand, within DZA65_RS20655 at 4454.820 kb on + strand, within DZA65_RS20655 at 4454.820 kb on + strand, within DZA65_RS20655 at 4454.820 kb on + strand, within DZA65_RS20655 at 4454.821 kb on - strand, within DZA65_RS20655 at 4454.836 kb on + strand at 4454.897 kb on - strand, within DZA65_RS20655 at 4454.952 kb on + strand, within DZA65_RS20655 at 4454.953 kb on - strand, within DZA65_RS20655 at 4455.043 kb on + strand, within DZA65_RS20655 at 4455.044 kb on - strand, within DZA65_RS20655 at 4455.076 kb on - strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.082 kb on + strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.083 kb on - strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.084 kb on + strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.085 kb on - strand, within DZA65_RS20655 at 4455.150 kb on + strand, within DZA65_RS20655 at 4455.336 kb on + strand, within DZA65_RS20655 at 4455.337 kb on - strand, within DZA65_RS20655 at 4455.374 kb on - strand, within DZA65_RS20655 at 4455.393 kb on + strand, within DZA65_RS20655 at 4455.393 kb on + strand, within DZA65_RS20655 at 4455.394 kb on - strand, within DZA65_RS20655 at 4455.394 kb on - strand, within DZA65_RS20655 at 4455.394 kb on - strand, within DZA65_RS20655 at 4455.394 kb on - strand, within DZA65_RS20655 at 4455.417 kb on + strand, within DZA65_RS20655 at 4455.417 kb on + strand, within DZA65_RS20655 at 4455.418 kb on - strand, within DZA65_RS20655
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 4,452,871 + DZA65_RS20640 0.73 -1.5 4,452,871 + DZA65_RS20640 0.73 -1.2 4,452,871 + DZA65_RS20640 0.73 -0.3 4,453,087 + +2.2 4,453,087 + +0.2 4,453,087 + -0.8 4,453,087 + -1.5 4,453,087 + +0.8 4,453,087 + +2.3 4,453,088 - +1.9 4,453,100 + -0.4 4,453,100 + -2.2 4,453,100 + +0.5 4,453,100 + -1.5 4,453,100 + -0.2 4,453,100 + -0.6 4,453,101 - +0.4 4,453,101 - -1.5 4,453,101 - -0.5 4,453,107 + -1.4 4,453,160 - +0.2 4,453,200 + DZA65_RS20645 0.18 +1.8 4,453,201 - DZA65_RS20645 0.18 +0.8 4,453,267 + DZA65_RS20645 0.34 -1.2 4,453,268 - DZA65_RS20645 0.35 -0.8 4,453,268 - DZA65_RS20645 0.35 -1.2 4,453,268 - DZA65_RS20645 0.35 +1.8 4,453,268 - DZA65_RS20645 0.35 -0.9 4,453,372 + DZA65_RS20645 0.60 -0.5 4,453,372 + DZA65_RS20645 0.60 +5.5 4,453,372 + DZA65_RS20645 0.60 -1.7 4,453,372 + DZA65_RS20645 0.60 +0.2 4,453,372 + DZA65_RS20645 0.60 -0.2 4,453,372 + DZA65_RS20645 0.60 -0.8 4,453,373 - DZA65_RS20645 0.60 -1.7 4,453,373 - DZA65_RS20645 0.60 -0.0 4,453,373 - DZA65_RS20645 0.60 -0.9 4,453,373 - DZA65_RS20645 0.60 -0.1 4,453,534 + -1.9 4,453,577 + -0.8 4,453,577 + -1.5 4,453,577 + +0.3 4,453,577 + -1.2 4,453,578 - +0.5 4,453,578 - +0.8 4,453,578 - +0.2 4,453,581 + +2.4 4,453,582 - -0.4 4,453,582 - +0.2 4,453,582 - -1.2 4,453,584 - -0.3 4,453,584 - -1.5 4,453,607 + -0.5 4,453,607 + +4.5 4,453,607 + -0.5 4,453,607 + -1.7 4,453,608 - +1.2 4,453,608 - -0.2 4,453,608 - +0.2 4,453,608 - -1.1 4,453,639 + +0.2 4,453,639 + -1.5 4,453,640 - -2.6 4,453,681 + -0.2 4,453,681 + -0.6 4,453,681 + -0.5 4,453,681 + -0.2 4,453,681 + -0.1 4,453,741 + +0.8 4,453,743 + +2.8 4,453,786 + -0.5 4,453,786 + -0.2 4,453,786 + +0.2 4,453,786 + -1.0 4,453,786 + -3.1 4,453,791 + -0.2 4,453,791 + -0.4 4,453,801 + -1.0 4,453,801 + -2.5 4,453,839 + -0.2 4,454,495 + +1.1 4,454,495 + -1.5 4,454,561 - -1.5 4,454,584 - +0.2 4,454,584 - -0.1 4,454,653 + +0.2 4,454,653 + -0.7 4,454,654 - -1.1 4,454,816 - DZA65_RS20655 0.19 -0.8 4,454,816 - DZA65_RS20655 0.19 +0.0 4,454,820 + DZA65_RS20655 0.19 +0.8 4,454,820 + DZA65_RS20655 0.19 -1.6 4,454,820 + DZA65_RS20655 0.19 -2.4 4,454,821 - DZA65_RS20655 0.20 +0.2 4,454,836 + -0.5 4,454,897 - DZA65_RS20655 0.26 +2.5 4,454,952 + DZA65_RS20655 0.30 -2.7 4,454,953 - DZA65_RS20655 0.30 +1.1 4,455,043 + DZA65_RS20655 0.38 -0.4 4,455,044 - DZA65_RS20655 0.38 +1.0 4,455,076 - DZA65_RS20655 0.40 -0.1 4,455,082 + DZA65_RS20655 0.41 -0.2 4,455,082 + DZA65_RS20655 0.41 +0.1 4,455,082 + DZA65_RS20655 0.41 -0.4 4,455,082 + DZA65_RS20655 0.41 -0.5 4,455,082 + DZA65_RS20655 0.41 -0.2 4,455,082 + DZA65_RS20655 0.41 -1.0 4,455,082 + DZA65_RS20655 0.41 -1.6 4,455,082 + DZA65_RS20655 0.41 +0.2 4,455,082 + DZA65_RS20655 0.41 -0.4 4,455,082 + DZA65_RS20655 0.41 -1.1 4,455,082 + DZA65_RS20655 0.41 -0.6 4,455,083 - DZA65_RS20655 0.41 +0.6 4,455,083 - DZA65_RS20655 0.41 +0.5 4,455,083 - DZA65_RS20655 0.41 -0.4 4,455,083 - DZA65_RS20655 0.41 -0.8 4,455,083 - DZA65_RS20655 0.41 -0.3 4,455,083 - DZA65_RS20655 0.41 -0.5 4,455,083 - DZA65_RS20655 0.41 -0.4 4,455,083 - DZA65_RS20655 0.41 -1.5 4,455,083 - DZA65_RS20655 0.41 -0.1 4,455,084 + DZA65_RS20655 0.41 +0.2 4,455,084 + DZA65_RS20655 0.41 +1.8 4,455,084 + DZA65_RS20655 0.41 +0.6 4,455,084 + DZA65_RS20655 0.41 +1.5 4,455,084 + DZA65_RS20655 0.41 -0.8 4,455,084 + DZA65_RS20655 0.41 -0.6 4,455,084 + DZA65_RS20655 0.41 -0.1 4,455,084 + DZA65_RS20655 0.41 -1.8 4,455,084 + DZA65_RS20655 0.41 -1.5 4,455,084 + DZA65_RS20655 0.41 -2.4 4,455,084 + DZA65_RS20655 0.41 -2.3 4,455,084 + DZA65_RS20655 0.41 +1.1 4,455,084 + DZA65_RS20655 0.41 +1.1 4,455,085 - DZA65_RS20655 0.41 +0.8 4,455,085 - DZA65_RS20655 0.41 -1.0 4,455,085 - DZA65_RS20655 0.41 +1.2 4,455,085 - DZA65_RS20655 0.41 +0.2 4,455,085 - DZA65_RS20655 0.41 -1.4 4,455,085 - DZA65_RS20655 0.41 +2.1 4,455,085 - DZA65_RS20655 0.41 -0.5 4,455,085 - DZA65_RS20655 0.41 +1.5 4,455,085 - DZA65_RS20655 0.41 +0.8 4,455,085 - DZA65_RS20655 0.41 -0.2 4,455,085 - DZA65_RS20655 0.41 -0.2 4,455,085 - DZA65_RS20655 0.41 +0.2 4,455,150 + DZA65_RS20655 0.46 -0.5 4,455,336 + DZA65_RS20655 0.62 -0.9 4,455,337 - DZA65_RS20655 0.62 -0.4 4,455,374 - DZA65_RS20655 0.65 +0.8 4,455,393 + DZA65_RS20655 0.66 -0.8 4,455,393 + DZA65_RS20655 0.66 -2.4 4,455,394 - DZA65_RS20655 0.66 +2.4 4,455,394 - DZA65_RS20655 0.66 +2.4 4,455,394 - DZA65_RS20655 0.66 +0.3 4,455,394 - DZA65_RS20655 0.66 -2.0 4,455,417 + DZA65_RS20655 0.68 +0.4 4,455,417 + DZA65_RS20655 0.68 -0.5 4,455,418 - DZA65_RS20655 0.68 -1.0
Or see this region's nucleotide sequence