Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19960 and DZA65_RS19965 are separated by 11 nucleotides DZA65_RS19965 and DZA65_RS19970 are separated by 31 nucleotides
DZA65_RS19960: DZA65_RS19960 - homocitrate synthase, at 4,317,884 to 4,319,032
_RS19960
DZA65_RS19965: DZA65_RS19965 - cysteine desulfurase NifS, at 4,319,044 to 4,320,306
_RS19965
DZA65_RS19970: DZA65_RS19970 - Fe-S cluster assembly protein NifU, at 4,320,338 to 4,321,183
_RS19970
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.138 kb on - strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960 at 4318.756 kb on + strand, within DZA65_RS19960 at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.106 kb on - strand at 4319.123 kb on - strand at 4319.159 kb on + strand at 4319.160 kb on - strand at 4319.160 kb on - strand at 4319.160 kb on - strand at 4319.182 kb on - strand, within DZA65_RS19965 at 4319.184 kb on - strand, within DZA65_RS19965 at 4319.184 kb on - strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.361 kb on + strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.371 kb on - strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.489 kb on - strand, within DZA65_RS19965 at 4319.489 kb on - strand at 4319.535 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.855 kb on + strand, within DZA65_RS19965 at 4319.856 kb on - strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.908 kb on - strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4320.048 kb on + strand, within DZA65_RS19965 at 4320.049 kb on - strand, within DZA65_RS19965 at 4320.068 kb on + strand, within DZA65_RS19965 at 4320.069 kb on - strand, within DZA65_RS19965 at 4320.294 kb on - strand at 4320.335 kb on + strand at 4320.336 kb on - strand at 4320.336 kb on - strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.340 kb on - strand at 4320.340 kb on - strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.691 kb on - strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.823 kb on - strand, within DZA65_RS19970 at 4321.145 kb on - strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 4,318,137 + DZA65_RS19960 0.22 +0.2 4,318,137 + DZA65_RS19960 0.22 -0.5 4,318,137 + DZA65_RS19960 0.22 -0.1 4,318,137 + DZA65_RS19960 0.22 -1.0 4,318,138 - DZA65_RS19960 0.22 +1.2 4,318,220 + DZA65_RS19960 0.29 +1.1 4,318,220 + DZA65_RS19960 0.29 +0.8 4,318,220 + DZA65_RS19960 0.29 +0.2 4,318,220 + DZA65_RS19960 0.29 +0.2 4,318,220 + DZA65_RS19960 0.29 -0.8 4,318,220 + DZA65_RS19960 0.29 -1.0 4,318,220 + DZA65_RS19960 0.29 -0.2 4,318,221 - DZA65_RS19960 0.29 -1.5 4,318,221 - DZA65_RS19960 0.29 -0.2 4,318,221 - DZA65_RS19960 0.29 +1.4 4,318,221 - DZA65_RS19960 0.29 +0.7 4,318,221 - DZA65_RS19960 0.29 -0.0 4,318,221 - DZA65_RS19960 0.29 +1.5 4,318,221 - DZA65_RS19960 0.29 +0.1 4,318,221 - DZA65_RS19960 0.29 -0.2 4,318,221 - DZA65_RS19960 0.29 -1.7 4,318,221 - DZA65_RS19960 0.29 -1.4 4,318,221 - DZA65_RS19960 0.29 +1.8 4,318,537 + DZA65_RS19960 0.57 +1.8 4,318,537 + DZA65_RS19960 0.57 -0.8 4,318,756 + DZA65_RS19960 0.76 +0.8 4,319,051 + -0.2 4,319,051 + +1.5 4,319,051 + -0.0 4,319,051 + -0.5 4,319,051 + -0.5 4,319,051 + +1.2 4,319,052 - +1.8 4,319,052 - -0.5 4,319,052 - -1.4 4,319,052 - -1.4 4,319,106 - +0.3 4,319,123 - -1.2 4,319,159 + -0.2 4,319,160 - -2.2 4,319,160 - -0.9 4,319,160 - -0.4 4,319,182 - DZA65_RS19965 0.11 -0.2 4,319,184 - DZA65_RS19965 0.11 -1.2 4,319,184 - DZA65_RS19965 0.11 -0.6 4,319,225 + DZA65_RS19965 0.14 +1.8 4,319,225 + DZA65_RS19965 0.14 -0.5 4,319,225 + DZA65_RS19965 0.14 +2.7 4,319,225 + DZA65_RS19965 0.14 -0.8 4,319,225 + DZA65_RS19965 0.14 -0.7 4,319,361 + DZA65_RS19965 0.25 +1.1 4,319,362 - DZA65_RS19965 0.25 -1.9 4,319,362 - DZA65_RS19965 0.25 -2.0 4,319,370 + DZA65_RS19965 0.26 +2.0 4,319,370 + DZA65_RS19965 0.26 -2.1 4,319,371 - DZA65_RS19965 0.26 -1.8 4,319,488 + DZA65_RS19965 0.35 -0.5 4,319,488 + DZA65_RS19965 0.35 -1.7 4,319,488 + DZA65_RS19965 0.35 -0.2 4,319,488 + DZA65_RS19965 0.35 +0.8 4,319,489 - DZA65_RS19965 0.35 -0.4 4,319,489 - -1.2 4,319,535 + DZA65_RS19965 0.39 +1.2 4,319,615 + DZA65_RS19965 0.45 -0.3 4,319,615 + DZA65_RS19965 0.45 +0.2 4,319,615 + DZA65_RS19965 0.45 +2.1 4,319,615 + DZA65_RS19965 0.45 -0.3 4,319,615 + DZA65_RS19965 0.45 -0.5 4,319,615 + DZA65_RS19965 0.45 -0.8 4,319,616 - DZA65_RS19965 0.45 +3.6 4,319,616 - DZA65_RS19965 0.45 -0.2 4,319,616 - DZA65_RS19965 0.45 -1.7 4,319,740 + DZA65_RS19965 0.55 +1.8 4,319,740 + -0.2 4,319,740 + DZA65_RS19965 0.55 -0.9 4,319,740 + DZA65_RS19965 0.55 -1.3 4,319,740 + DZA65_RS19965 0.55 +0.1 4,319,740 + DZA65_RS19965 0.55 +0.3 4,319,740 + DZA65_RS19965 0.55 +2.2 4,319,740 + DZA65_RS19965 0.55 -0.5 4,319,740 + DZA65_RS19965 0.55 +2.6 4,319,740 + DZA65_RS19965 0.55 +2.7 4,319,741 - DZA65_RS19965 0.55 +0.8 4,319,741 - DZA65_RS19965 0.55 -0.9 4,319,741 - DZA65_RS19965 0.55 +0.8 4,319,741 - DZA65_RS19965 0.55 +0.8 4,319,741 - DZA65_RS19965 0.55 -0.3 4,319,741 - DZA65_RS19965 0.55 -1.8 4,319,741 - DZA65_RS19965 0.55 -0.5 4,319,741 - DZA65_RS19965 0.55 -0.0 4,319,741 - DZA65_RS19965 0.55 -2.1 4,319,855 + DZA65_RS19965 0.64 +1.1 4,319,856 - DZA65_RS19965 0.64 +1.5 4,319,907 + DZA65_RS19965 0.68 +0.5 4,319,907 + DZA65_RS19965 0.68 +0.1 4,319,907 + DZA65_RS19965 0.68 +0.8 4,319,907 + DZA65_RS19965 0.68 +1.0 4,319,908 - DZA65_RS19965 0.68 +0.8 4,319,909 + DZA65_RS19965 0.68 -0.0 4,319,909 + DZA65_RS19965 0.68 -0.8 4,319,909 + DZA65_RS19965 0.68 +1.2 4,319,910 - DZA65_RS19965 0.69 +0.2 4,319,910 - DZA65_RS19965 0.69 -0.8 4,319,910 - DZA65_RS19965 0.69 -1.0 4,320,048 + DZA65_RS19965 0.79 +1.8 4,320,049 - DZA65_RS19965 0.80 -2.7 4,320,068 + DZA65_RS19965 0.81 -0.2 4,320,069 - DZA65_RS19965 0.81 +0.5 4,320,294 - -0.5 4,320,335 + -0.0 4,320,336 - -0.2 4,320,336 - -1.5 4,320,339 + -1.4 4,320,339 + -0.5 4,320,339 + +2.8 4,320,339 + -0.5 4,320,339 + -0.5 4,320,340 - -1.7 4,320,340 - -0.1 4,320,358 + -0.4 4,320,358 + -1.4 4,320,358 + +0.2 4,320,358 + -0.0 4,320,358 + -0.8 4,320,358 + -0.2 4,320,358 + -0.4 4,320,359 - -1.7 4,320,359 - -0.8 4,320,359 - -0.2 4,320,359 - -0.2 4,320,359 - -0.2 4,320,359 - -0.8 4,320,359 - -1.7 4,320,359 - +1.4 4,320,360 + -1.2 4,320,360 + -1.0 4,320,360 + +0.1 4,320,360 + -1.4 4,320,360 + -1.2 4,320,360 + -1.3 4,320,360 + -1.4 4,320,360 + -1.0 4,320,360 + -0.5 4,320,360 + -0.0 4,320,360 + -2.1 4,320,360 + +0.4 4,320,360 + -0.6 4,320,360 + +0.2 4,320,361 - -0.9 4,320,361 - +0.1 4,320,361 - -0.5 4,320,361 - +0.5 4,320,361 - -1.2 4,320,361 - +0.8 4,320,361 - -1.3 4,320,361 - +0.3 4,320,361 - -1.2 4,320,361 - -1.2 4,320,361 - +0.4 4,320,487 + DZA65_RS19970 0.18 -0.1 4,320,487 + DZA65_RS19970 0.18 +1.2 4,320,487 + DZA65_RS19970 0.18 -1.0 4,320,487 + DZA65_RS19970 0.18 -0.4 4,320,488 - DZA65_RS19970 0.18 -0.5 4,320,488 - DZA65_RS19970 0.18 +0.5 4,320,690 + DZA65_RS19970 0.42 -1.0 4,320,690 + DZA65_RS19970 0.42 -0.0 4,320,691 - DZA65_RS19970 0.42 -0.2 4,320,772 + DZA65_RS19970 0.51 -0.2 4,320,772 + DZA65_RS19970 0.51 +0.2 4,320,773 - DZA65_RS19970 0.51 -1.5 4,320,773 - DZA65_RS19970 0.51 -0.5 4,320,773 - DZA65_RS19970 0.51 -1.2 4,320,773 - DZA65_RS19970 0.51 +0.4 4,320,822 + DZA65_RS19970 0.57 +0.5 4,320,822 + DZA65_RS19970 0.57 +1.2 4,320,822 + DZA65_RS19970 0.57 +2.4 4,320,822 + DZA65_RS19970 0.57 +0.2 4,320,823 - DZA65_RS19970 0.57 +0.4 4,321,145 - -0.5 4,321,173 + -0.2 4,321,173 + -0.8 4,321,173 + +0.2 4,321,173 + -1.4 4,321,173 + +1.8 4,321,174 - -0.0 4,321,174 - -0.9 4,321,174 - -0.2 4,321,174 - +0.4 4,321,174 - +0.3 4,321,198 - -1.8
Or see this region's nucleotide sequence