Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19935

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,313,808	+		DZA65_RS19925	0.66	+0.3
4,313,808	+		DZA65_RS19925	0.66	-0.9
4,313,808	+		DZA65_RS19925	0.66	-0.4
4,313,808	+		DZA65_RS19925	0.66	+0.2
4,313,808	+		DZA65_RS19925	0.66	-1.5
4,313,808	+		DZA65_RS19925	0.66	+1.5
4,313,809	-		DZA65_RS19925	0.66	-1.8
4,313,809	-		DZA65_RS19925	0.66	-1.0
4,313,869	+		DZA65_RS19925	0.69	+0.6
4,313,869	+		DZA65_RS19925	0.69	+0.6
4,313,870	-		DZA65_RS19925	0.70	+0.2
4,313,870	-		DZA65_RS19925	0.70	+1.8
4,313,870	-		DZA65_RS19925	0.70	+0.2
4,313,870	-		DZA65_RS19925	0.70	+0.2
4,313,929	-		DZA65_RS19925	0.73	-1.8
4,313,961	+		DZA65_RS19925	0.75	-1.0
4,313,961	+		DZA65_RS19925	0.75	+0.2
4,313,961	+		DZA65_RS19925	0.75	-0.8
4,313,961	+		DZA65_RS19925	0.75	-0.0
4,313,961	+		DZA65_RS19925	0.75	-1.5
4,313,961	+		DZA65_RS19925	0.75	+0.4
4,313,961	+		DZA65_RS19925	0.75	+0.2
4,313,962	-		DZA65_RS19925	0.75	+0.2
4,313,962	-		DZA65_RS19925	0.75	+0.5
4,313,962	-		DZA65_RS19925	0.75	-0.2
4,313,962	-		DZA65_RS19925	0.75	-0.0
4,313,962	-		DZA65_RS19925	0.75	-0.8
4,313,962	-		DZA65_RS19925	0.75	+0.2
4,313,998	+		DZA65_RS19925	0.78	+0.1
4,313,998	+		DZA65_RS19925	0.78	-1.0
4,313,998	+		DZA65_RS19925	0.78	-1.6
4,313,998	+		DZA65_RS19925	0.78	+0.8
4,313,998	+		DZA65_RS19925	0.78	-0.2
4,313,999	-		DZA65_RS19925	0.78	+0.8
4,314,005	+		DZA65_RS19925	0.78	+0.7
4,314,018	+		DZA65_RS19925	0.79	-0.1
4,314,018	+		DZA65_RS19925	0.79	-0.5
4,314,018	+		DZA65_RS19925	0.79	+0.1
4,314,019	-		DZA65_RS19925	0.79	-0.5
4,314,099	+		DZA65_RS19925	0.84	-0.7
4,314,100	-		DZA65_RS19925	0.84	+1.0
4,314,100	-		DZA65_RS19925	0.84	-1.2
4,314,100	-		DZA65_RS19925	0.84	-0.1
4,314,100	-				+0.2
4,314,202	-				-0.6
4,314,202	-				-0.5
4,314,202	-				-0.5
4,314,236	-				-0.0
4,314,346	+				-0.2
4,314,346	+				-1.8
4,314,346	+				-0.2
4,314,346	+				+0.2
4,314,346	+				-0.1
4,314,346	+				-0.1
4,314,346	+				+0.5
4,314,346	+				-1.2
4,314,346	+				-1.0
4,314,346	+				+0.2
4,314,346	+				+0.1
4,314,347	-				-1.0
4,314,347	-				-1.5
4,314,347	-				-1.7
4,314,347	-				-1.0
4,314,347	-				-0.1
4,314,347	-				-0.1
4,314,347	-				-0.4
4,314,347	-				+0.5
4,314,347	-				-1.7
4,314,347	-				-1.2
4,314,347	-				+1.0
4,314,347	-				-1.5
4,314,347	-				-1.3
4,314,432	-				-0.7
4,314,473	-				-2.2
4,314,587	+				-0.0
4,314,588	-				-1.7
4,314,588	-				+0.8
4,314,670	-				-0.2
4,314,675	+				+0.2
4,314,675	+				+1.6
4,314,675	+				+1.1
4,314,675	+				-2.8
4,314,676	-				+0.3
4,314,676	-				-2.1
4,314,679	+				-1.2
4,314,679	+				-0.5
4,314,680	-				+4.3
4,314,769	+				-1.2
4,314,769	+				-0.1
4,314,769	+				+0.2
4,314,770	-				-0.8
4,314,770	-				+0.8
4,314,770	-				+0.2
4,314,770	-				-1.0
4,314,770	-				-0.4
4,314,770	-				+2.1
4,314,779	+				+1.0
4,314,838	+				+0.4
4,314,838	+				-0.4
4,315,125	+		DZA65_RS19935	0.64	-1.8
4,315,125	+		DZA65_RS19935	0.64	-1.0
4,315,126	-		DZA65_RS19935	0.64	-0.5
4,315,126	-		DZA65_RS19935	0.64	-0.3
4,315,132	+		DZA65_RS19935	0.65	+2.8
4,315,132	+		DZA65_RS19935	0.65	-1.4
4,315,132	+		DZA65_RS19935	0.65	+0.2
4,315,132	+		DZA65_RS19935	0.65	-0.9
4,315,132	+		DZA65_RS19935	0.65	-1.6
4,315,133	-		DZA65_RS19935	0.65	-2.2
4,315,133	-		DZA65_RS19935	0.65	+0.6
4,315,133	-		DZA65_RS19935	0.65	-0.4
4,315,133	-		DZA65_RS19935	0.65	-0.2
4,315,133	-		DZA65_RS19935	0.65	+0.6
4,315,133	-		DZA65_RS19935	0.65	+0.2
4,315,133	-		DZA65_RS19935	0.65	-0.0
4,315,133	-		DZA65_RS19935	0.65	-1.1
4,315,133	-		DZA65_RS19935	0.65	+0.5
4,315,133	-		DZA65_RS19935	0.65	+0.8
4,315,314	+				-0.4
4,315,315	-				+0.1
4,315,340	-				-0.6
4,315,440	-				-0.5
4,315,440	-				+1.8
4,315,503	+				-2.6
4,315,503	+				-0.5
4,315,504	-				+0.5
4,315,511	+				-0.2
4,315,512	-				+0.5
4,315,512	-				+1.8
4,315,512	-				-1.0
4,315,514	+				-0.8
4,315,515	-				-1.0
4,315,515	-				-0.2
4,315,515	-				-0.8
4,315,515	-				-1.4
4,315,515	-				-1.4
4,315,521	+				-0.8
4,315,610	+				-1.7
4,315,611	-				-0.2
4,315,624	+				-2.1
4,315,624	+				-0.3
4,315,646	+				+0.9
4,315,646	+				+0.8
4,315,646	+				-1.0
4,315,647	-				+1.8
4,315,647	-				+0.2
4,315,647	-				+0.8
4,315,647	-				-0.1
4,315,647	-				+0.5
4,315,647	-				-0.4
4,315,647	-				-0.9
4,315,648	+				+2.4
4,315,648	+				-2.7
4,315,648	+				-1.5
4,315,649	-				-1.5
4,315,649	-				-0.1
4,315,702	+				-0.6
4,315,702	+				-1.0
4,315,702	+				+0.6
4,315,702	+				+2.5
4,315,702	+				+0.5
4,315,702	+				+0.8
4,315,703	-				-0.5
4,315,703	-				+0.2
4,315,703	-				+0.8
4,315,703	-				-0.3
4,315,721	+				+1.8
4,315,721	+				+0.2
4,315,721	+				-0.0
4,315,722	-				+0.9
4,315,722	-				+1.2
4,315,722	-				+0.2
4,315,841	+		DZA65_RS19940	0.25	+0.3
4,315,841	+		DZA65_RS19940	0.25	+1.5
4,315,841	+		DZA65_RS19940	0.25	-0.3
4,315,841	+		DZA65_RS19940	0.25	-0.5
4,315,842	-		DZA65_RS19940	0.25	-1.5
4,315,842	-		DZA65_RS19940	0.25	-1.1
4,315,842	-		DZA65_RS19940	0.25	-0.7
4,315,842	-		DZA65_RS19940	0.25	-0.3
4,315,842	-		DZA65_RS19940	0.25	-1.7
4,315,842	-		DZA65_RS19940	0.25	+0.4
4,315,842	-		DZA65_RS19940	0.25	+0.5
4,315,860	+		DZA65_RS19940	0.28	+0.2
4,315,861	-		DZA65_RS19940	0.28	-0.8
4,315,885	+		DZA65_RS19940	0.32	-1.2
4,315,885	+		DZA65_RS19940	0.32	+0.1
4,315,885	+		DZA65_RS19940	0.32	-0.5
4,315,885	+		DZA65_RS19940	0.32	-0.7
4,315,885	+		DZA65_RS19940	0.32	+0.8
4,315,885	+		DZA65_RS19940	0.32	+1.2
4,315,885	+		DZA65_RS19940	0.32	+0.8
4,315,886	-		DZA65_RS19940	0.32	-0.2
4,315,886	-		DZA65_RS19940	0.32	+0.2
4,315,886	-		DZA65_RS19940	0.32	-0.2
4,315,886	-		DZA65_RS19940	0.32	-0.5
4,315,886	-		DZA65_RS19940	0.32	+0.6
4,315,886	-		DZA65_RS19940	0.32	+0.8
4,315,886	-		DZA65_RS19940	0.32	+0.5
4,315,886	-		DZA65_RS19940	0.32	-1.7
4,315,886	-		DZA65_RS19940	0.32	-1.2
4,315,886	-		DZA65_RS19940	0.32	+1.2
4,315,886	-		DZA65_RS19940	0.32	-1.3
4,315,886	-		DZA65_RS19940	0.32	-0.2
4,315,886	-		DZA65_RS19940	0.32	-0.0
4,315,886	-		DZA65_RS19940	0.32	-1.0
4,316,067	+		DZA65_RS19940	0.61	-1.0
4,316,068	-		DZA65_RS19940	0.61	+0.5
4,316,091	+		DZA65_RS19940	0.65	-0.1
4,316,091	+		DZA65_RS19940	0.65	-1.5
4,316,091	+		DZA65_RS19940	0.65	-0.2
4,316,091	+		DZA65_RS19940	0.65	-0.0
4,316,091	+		DZA65_RS19940	0.65	-1.0
4,316,091	+		DZA65_RS19940	0.65	+1.4
4,316,091	+		DZA65_RS19940	0.65	-0.8
4,316,092	-		DZA65_RS19940	0.65	-0.8
4,316,092	-		DZA65_RS19940	0.65	+0.2
4,316,092	-		DZA65_RS19940	0.65	+0.5
4,316,092	-		DZA65_RS19940	0.65	+0.8
4,316,092	-		DZA65_RS19940	0.65	-1.9
4,316,092	-		DZA65_RS19940	0.65	+0.8
4,316,092	-		DZA65_RS19940	0.65	-1.0
4,316,095	+		DZA65_RS19940	0.65	-1.0
4,316,095	+		DZA65_RS19940	0.65	+0.5
4,316,095	+		DZA65_RS19940	0.65	-1.2
4,316,095	+		DZA65_RS19940	0.65	+0.2
4,316,095	+		DZA65_RS19940	0.65	-0.9
4,316,095	+				+0.2
4,316,095	+		DZA65_RS19940	0.65	-0.9
4,316,095	+		DZA65_RS19940	0.65	+0.4
4,316,095	+		DZA65_RS19940	0.65	-1.2
4,316,095	+		DZA65_RS19940	0.65	-1.1
4,316,095	+		DZA65_RS19940	0.65	-2.0
4,316,095	+		DZA65_RS19940	0.65	+0.2
4,316,095	+		DZA65_RS19940	0.65	-0.5
4,316,095	+				-1.4
4,316,095	+		DZA65_RS19940	0.65	-1.5
4,316,095	+		DZA65_RS19940	0.65	-1.2
4,316,095	+		DZA65_RS19940	0.65	+1.2
4,316,095	+		DZA65_RS19940	0.65	-2.0
4,316,095	+		DZA65_RS19940	0.65	-0.1
4,316,095	+		DZA65_RS19940	0.65	+0.8
4,316,095	+		DZA65_RS19940	0.65	-1.9
4,316,095	+		DZA65_RS19940	0.65	+0.3
4,316,096	-		DZA65_RS19940	0.66	+0.1
4,316,096	-		DZA65_RS19940	0.66	-0.8
4,316,096	-		DZA65_RS19940	0.66	-1.7
4,316,096	-				-0.5
4,316,096	-		DZA65_RS19940	0.66	-0.8
4,316,096	-		DZA65_RS19940	0.66	+0.2
4,316,096	-		DZA65_RS19940	0.66	-1.9
4,316,096	-		DZA65_RS19940	0.66	-0.4
4,316,096	-		DZA65_RS19940	0.66	-1.0
4,316,096	-		DZA65_RS19940	0.66	-0.4
4,316,096	-		DZA65_RS19940	0.66	-1.0
4,316,096	-		DZA65_RS19940	0.66	-0.5
4,316,096	-		DZA65_RS19940	0.66	-0.2
4,316,096	-		DZA65_RS19940	0.66	-1.4
4,316,096	-		DZA65_RS19940	0.66	-0.0
4,316,096	-		DZA65_RS19940	0.66	-1.5
4,316,096	-		DZA65_RS19940	0.66	-2.4
4,316,096	-		DZA65_RS19940	0.66	-0.0
4,316,096	-		DZA65_RS19940	0.66	-1.2
4,316,097	+		DZA65_RS19940	0.66	-0.8
4,316,097	+		DZA65_RS19940	0.66	+0.3
4,316,097	+		DZA65_RS19940	0.66	-1.2
4,316,097	+		DZA65_RS19940	0.66	-0.0
4,316,097	+		DZA65_RS19940	0.66	+1.2
4,316,097	+		DZA65_RS19940	0.66	-0.2
4,316,097	+		DZA65_RS19940	0.66	-0.4
4,316,097	+		DZA65_RS19940	0.66	-0.5
4,316,097	+		DZA65_RS19940	0.66	+0.4
4,316,097	+		DZA65_RS19940	0.66	-1.2
4,316,097	+		DZA65_RS19940	0.66	-0.5
4,316,098	-		DZA65_RS19940	0.66	+1.8
4,316,098	-		DZA65_RS19940	0.66	-0.4
4,316,098	-		DZA65_RS19940	0.66	-1.1
4,316,098	-		DZA65_RS19940	0.66	-0.4
4,316,098	-		DZA65_RS19940	0.66	-2.3
4,316,098	-		DZA65_RS19940	0.66	-2.0
4,316,098	-		DZA65_RS19940	0.66	-1.0
4,316,155	+		DZA65_RS19940	0.75	-0.3
4,316,156	-		DZA65_RS19940	0.75	-1.3
4,316,177	+		DZA65_RS19940	0.78	+3.4
4,316,178	-		DZA65_RS19940	0.79	-0.8
4,316,282	+				-1.0
4,316,312	+				-0.2
4,316,312	+				+2.9
4,316,313	-				-0.6
4,316,313	-				-1.7
4,316,313	-				+2.1