Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19275

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,166,237	+		DZA65_RS19270	0.45	+0.4
4,166,238	-		DZA65_RS19270	0.45	+0.2
4,166,238	-		DZA65_RS19270	0.45	+0.0
4,166,238	-		DZA65_RS19270	0.45	-0.1
4,166,238	-		DZA65_RS19270	0.45	-1.7
4,166,263	-		DZA65_RS19270	0.47	-0.1
4,166,263	-		DZA65_RS19270	0.47	-1.0
4,166,270	+		DZA65_RS19270	0.47	-0.6
4,166,270	+		DZA65_RS19270	0.47	-1.3
4,166,270	+		DZA65_RS19270	0.47	+1.0
4,166,270	+		DZA65_RS19270	0.47	+0.3
4,166,271	-		DZA65_RS19270	0.47	+0.7
4,166,271	-		DZA65_RS19270	0.47	+0.7
4,166,271	-		DZA65_RS19270	0.47	+0.7
4,166,271	-		DZA65_RS19270	0.47	-0.2
4,166,336	+		DZA65_RS19270	0.51	-1.4
4,166,474	-		DZA65_RS19270	0.59	-0.7
4,166,621	+		DZA65_RS19270	0.68	-0.3
4,166,622	-		DZA65_RS19270	0.68	+1.7
4,166,632	+		DZA65_RS19270	0.69	+0.2
4,166,632	+		DZA65_RS19270	0.69	-0.0
4,166,633	-		DZA65_RS19270	0.69	-1.4
4,166,633	-		DZA65_RS19270	0.69	-0.6
4,166,852	-		DZA65_RS19270	0.82	-0.8
4,166,870	+		DZA65_RS19270	0.83	+1.0
4,166,890	+		DZA65_RS19270	0.84	+0.4
4,166,890	+		DZA65_RS19270	0.84	+0.4
4,166,891	-		DZA65_RS19270	0.84	+0.5
4,166,891	-		DZA65_RS19270	0.84	-0.6
4,166,891	-		DZA65_RS19270	0.84	-1.6
4,166,891	-		DZA65_RS19270	0.84	+0.7
4,166,913	+		DZA65_RS19270	0.86	+0.0
4,166,913	+		DZA65_RS19270	0.86	-0.6
4,166,913	+		DZA65_RS19270	0.86	-0.6
4,166,913	+		DZA65_RS19270	0.86	-0.8
4,166,914	-		DZA65_RS19270	0.86	-1.1
4,166,914	-		DZA65_RS19270	0.86	-0.1
4,166,914	-		DZA65_RS19270	0.86	-0.8
4,166,940	+		DZA65_RS19270	0.87	-0.4
4,166,966	+		DZA65_RS19270	0.89	+0.2
4,167,147	+				-1.1
4,167,147	+				+1.7
4,167,147	+				-0.7
4,167,147	+				-0.7
4,167,148	-				-1.1
4,167,148	-				+0.6
4,167,229	+		DZA65_RS19275	0.26	-1.8
4,167,229	+		DZA65_RS19275	0.26	-1.1
4,167,229	+		DZA65_RS19275	0.26	-0.3
4,167,229	+		DZA65_RS19275	0.26	-1.0
4,167,230	-		DZA65_RS19275	0.26	-1.7
4,167,230	-		DZA65_RS19275	0.26	-1.3
4,167,230	-		DZA65_RS19275	0.26	-0.3
4,167,230	-		DZA65_RS19275	0.26	-0.3
4,167,230	-		DZA65_RS19275	0.26	-0.6
4,167,278	+		DZA65_RS19275	0.43	-0.8
4,167,278	+		DZA65_RS19275	0.43	-0.6
4,167,278	+		DZA65_RS19275	0.43	-2.0
4,167,278	+		DZA65_RS19275	0.43	-2.8
4,167,278	+		DZA65_RS19275	0.43	-0.6
4,167,278	+		DZA65_RS19275	0.43	+0.6
4,167,279	-		DZA65_RS19275	0.43	-0.6
4,167,279	-		DZA65_RS19275	0.43	-2.1
4,167,279	-		DZA65_RS19275	0.43	+0.7
4,167,279	-		DZA65_RS19275	0.43	+3.9
4,167,279	-		DZA65_RS19275	0.43	+0.4
4,167,316	+		DZA65_RS19275	0.55	-0.8
4,167,317	-		DZA65_RS19275	0.56	-1.5
4,167,319	+		DZA65_RS19275	0.56	-0.8
4,167,320	-		DZA65_RS19275	0.57	+0.7
4,167,320	-		DZA65_RS19275	0.57	+0.6
4,167,320	-		DZA65_RS19275	0.57	-1.1
4,167,413	+		DZA65_RS19275	0.88	-0.7
4,167,413	+		DZA65_RS19275	0.88	+0.6
4,167,413	+		DZA65_RS19275	0.88	+0.0
4,167,413	+		DZA65_RS19275	0.88	+0.4
4,167,413	+		DZA65_RS19275	0.88	+1.0
4,167,413	+		DZA65_RS19275	0.88	+0.7
4,167,413	+		DZA65_RS19275	0.88	+0.9
4,167,413	+		DZA65_RS19275	0.88	-0.7
4,167,414	-		DZA65_RS19275	0.89	-0.7
4,167,414	-		DZA65_RS19275	0.89	+0.6
4,167,414	-		DZA65_RS19275	0.89	-0.8
4,167,414	-		DZA65_RS19275	0.89	-0.3
4,167,414	-		DZA65_RS19275	0.89	-1.3
4,167,414	-		DZA65_RS19275	0.89	-0.3
4,167,414	-		DZA65_RS19275	0.89	-0.3
4,167,414	-		DZA65_RS19275	0.89	+1.5
4,167,438	+				-0.8
4,167,491	+				+0.7
4,167,491	+				-1.1
4,167,491	+				+0.7
4,167,491	+				+1.2
4,167,491	+				+0.7
4,167,492	-				-0.3
4,167,524	+				-0.3
4,167,524	+				-1.7
4,167,524	+				-0.3
4,167,525	-				-0.8
4,167,702	+		DZA65_RS19280	0.28	-0.7
4,167,702	+		DZA65_RS19280	0.28	-0.6
4,167,703	-		DZA65_RS19280	0.28	-0.6
4,167,703	-		DZA65_RS19280	0.28	+0.5
4,167,703	-		DZA65_RS19280	0.28	-0.1
4,167,726	+		DZA65_RS19280	0.31	+0.7
4,167,726	+		DZA65_RS19280	0.31	-0.1
4,167,726	+		DZA65_RS19280	0.31	-1.1
4,167,727	-		DZA65_RS19280	0.31	+0.2
4,167,727	-		DZA65_RS19280	0.31	+0.0
4,167,727	-		DZA65_RS19280	0.31	+0.2
4,167,727	-		DZA65_RS19280	0.31	+1.3
4,167,727	-		DZA65_RS19280	0.31	-1.7
4,167,795	-		DZA65_RS19280	0.40	+0.5
4,167,795	-		DZA65_RS19280	0.40	+0.7
4,167,795	-		DZA65_RS19280	0.40	+0.7
4,167,795	-		DZA65_RS19280	0.40	-1.6
4,167,810	+		DZA65_RS19280	0.42	+0.1
4,167,930	+		DZA65_RS19280	0.57	-0.8
4,167,930	+		DZA65_RS19280	0.57	+0.7
4,167,962	+		DZA65_RS19280	0.61	-1.3
4,167,968	+		DZA65_RS19280	0.62	+0.6
4,167,968	+		DZA65_RS19280	0.62	+0.4
4,167,968	+		DZA65_RS19280	0.62	-1.3
4,167,968	+		DZA65_RS19280	0.62	+1.2
4,167,969	-		DZA65_RS19280	0.62	-0.8
4,167,969	-		DZA65_RS19280	0.62	+3.8
4,167,969	-		DZA65_RS19280	0.62	-1.3
4,167,969	-		DZA65_RS19280	0.62	-0.6
4,167,969	-		DZA65_RS19280	0.62	+0.2
4,167,969	-		DZA65_RS19280	0.62	+0.4
4,167,999	+		DZA65_RS19280	0.66	+1.2
4,167,999	+		DZA65_RS19280	0.66	+0.7
4,167,999	+		DZA65_RS19280	0.66	+0.3
4,168,000	-		DZA65_RS19280	0.66	-0.6
4,168,000	-				-0.6
4,168,034	+		DZA65_RS19280	0.71	+1.2
4,168,034	+		DZA65_RS19280	0.71	-0.3
4,168,214	+				-0.2
4,168,214	+				+0.5
4,168,214	+				-0.5
4,168,214	+				+1.5
4,168,214	+				-2.0
4,168,215	-				+0.6
4,168,215	-				-1.8
4,168,215	-				-0.1
4,168,215	-				+0.3
4,168,257	+				-0.6
4,168,265	+				-0.8
4,168,265	+				+0.6
4,168,265	+				-2.1
4,168,266	-				+2.7
4,168,270	+				-1.3
4,168,270	+				-0.6
4,168,270	+				-0.7
4,168,270	+				-0.3
4,168,270	+				-0.3
4,168,270	+				-0.3
4,168,270	+				-1.6
4,168,270	+				+0.3
4,168,271	-				-0.6
4,168,271	-				-0.4
4,168,271	-				-1.5
4,168,271	-				-0.6
4,168,271	-				-0.3
4,168,271	-				+1.7
4,168,271	-				+0.6
4,168,307	+				+0.7
4,168,307	+				-2.3
4,168,308	-				+1.2
4,168,342	-				-0.6
4,168,401	+				-1.0
4,168,412	+				-0.7
4,168,412	+				-0.8
4,168,413	-				-1.1
4,168,414	+				+0.9
4,168,415	-				-1.6
4,168,415	-				-0.6
4,168,415	-				-0.7
4,168,428	+				+1.0
4,168,428	+				-2.3
4,168,437	-				+4.9